Wall clock time and date at job start Fri Apr 10 2020 18:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99847 * 2 1 4 4 O 1.21492 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.48337 * 119.99910 * 179.97438 * 3 2 1 6 6 C 1.39300 * 119.57174 * 179.97438 * 5 3 2 7 7 C 1.38451 * 119.19037 * 179.74410 * 6 5 3 8 8 C 1.39865 * 118.35892 * 0.51992 * 7 6 5 9 9 C 1.48004 * 120.46621 * 179.76169 * 8 7 6 10 10 O 1.21529 * 120.00210 * 162.18854 * 9 8 7 11 11 N 1.34781 * 119.99590 * 342.18295 * 9 8 7 12 12 C 1.47418 * 125.65102 * 354.16145 * 11 9 8 13 13 C 1.54905 * 104.83346 * 204.09067 * 12 11 9 14 14 C 1.55158 * 101.58325 * 322.98715 * 13 12 11 15 15 H 1.08998 * 110.72152 * 277.14031 * 14 13 12 16 16 N 1.46500 * 110.72131 * 153.86250 * 14 13 12 17 17 C 1.36942 * 119.99840 * 160.02649 * 16 14 13 18 18 H 1.08002 * 119.99635 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99853 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99978 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47467 * 89.99819 * 21 19 17 23 23 H 1.48500 * 109.47286 * 209.99897 * 21 19 17 24 24 H 1.48504 * 109.47230 * 330.00013 * 21 19 17 25 25 C 1.47027 * 125.64407 * 174.11388 * 11 9 8 26 26 C 1.39735 * 119.07346 * 359.48058 * 8 7 6 27 27 N 1.31412 * 120.71429 * 0.27635 * 26 8 7 28 28 H 1.08994 * 109.47470 * 299.99984 * 1 2 3 29 29 H 1.08995 * 109.46683 * 60.00621 * 1 2 3 30 30 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00114 * 179.97438 * 2 1 3 32 32 H 1.08005 * 120.40636 * 359.97438 * 6 5 3 33 33 H 1.08006 * 120.82189 * 180.27474 * 7 6 5 34 34 H 1.09007 * 110.36457 * 322.92564 * 12 11 9 35 35 H 1.08996 * 110.36780 * 85.25006 * 12 11 9 36 36 H 1.09004 * 111.00731 * 81.06461 * 13 12 11 37 37 H 1.09004 * 111.00815 * 204.91305 * 13 12 11 38 38 H 0.96996 * 120.00167 * 340.03184 * 16 14 13 39 39 H 0.97006 * 119.99806 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88205 * 298.39588 * 25 11 9 41 41 H 1.08999 * 109.88267 * 59.56498 * 25 11 9 42 42 H 1.08000 * 119.63809 * 180.25124 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5314 2.2194 -0.0005 5 6 3.6222 1.1672 0.0006 6 6 4.3097 2.3788 0.0000 7 6 5.6941 2.3696 0.0060 8 6 6.3503 1.1344 0.0012 9 6 7.8290 1.0702 0.0019 10 8 8.3924 0.0415 0.3198 11 7 8.5506 2.1528 -0.3502 12 6 8.0027 3.4183 -0.8712 13 6 9.1653 4.0528 -1.6746 14 6 10.3914 3.6677 -0.8052 15 1 10.5155 4.3700 0.0191 16 7 11.6062 3.6044 -1.6215 17 6 12.8365 3.6892 -1.0259 18 1 12.9110 3.8032 0.0455 19 6 13.9876 3.6297 -1.7993 20 7 15.1699 3.7117 -1.2269 21 14 13.8585 3.4347 -3.6526 22 1 13.7990 4.7753 -4.2886 23 1 15.0464 2.6999 -4.1569 24 1 12.6276 2.6737 -3.9858 25 6 10.0146 2.2673 -0.2774 26 6 5.5904 -0.0382 0.0017 27 7 4.2773 0.0130 0.0011 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 3.7693 3.3139 -0.0012 33 1 6.2537 3.2934 0.0102 34 1 7.1523 3.2230 -1.5246 35 1 7.7088 4.0712 -0.0495 36 1 9.2383 3.6134 -2.6695 37 1 9.0536 5.1355 -1.7347 38 1 11.5392 3.5024 -2.5837 39 1 15.9744 3.6698 -1.7674 40 1 10.3439 2.1597 0.7561 41 1 10.4778 1.5003 -0.8980 42 1 6.0877 -0.9969 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019668316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:32 Heat of formation + Delta-G solvation = -21.624344 kcal Electronic energy + Delta-G solvation = -25614.211683 eV Core-core repulsion = 21787.388007 eV Total energy + Delta-G solvation = -3826.823676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13491 -41.03397 -39.86021 -38.75534 -36.19550 -35.80129 -34.26198 -33.32526 -32.75764 -31.40381 -29.55515 -28.35999 -26.40256 -25.37797 -24.59165 -23.89187 -21.98288 -21.89674 -20.96071 -19.79101 -19.51282 -18.47248 -17.85626 -17.63802 -16.98809 -16.61009 -16.48818 -16.44326 -16.00075 -15.73283 -15.43685 -15.18150 -14.87665 -14.77100 -14.49970 -14.42745 -14.14253 -13.80874 -13.71818 -13.59191 -13.27142 -13.10284 -12.97998 -12.54593 -12.25066 -12.14088 -11.84761 -11.64168 -11.62789 -11.39562 -11.10832 -11.04754 -10.72637 -10.52804 -10.17462 -9.76391 -9.40436 -8.03642 -5.39489 -0.91322 0.00807 1.21575 1.38341 1.42097 1.48598 1.72723 1.87599 2.01858 2.47602 2.68247 2.89762 3.22554 3.29370 3.45408 3.61865 3.63842 3.71197 3.79725 3.86480 4.10286 4.25391 4.31124 4.40807 4.45316 4.55641 4.59649 4.61871 4.73375 4.79964 4.85708 4.93611 4.94203 5.10542 5.17299 5.27783 5.31455 5.33910 5.76161 6.19829 6.21245 6.36717 6.54963 6.90412 7.01157 7.05505 7.79460 7.97114 9.17225 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.002345 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.806986 B =11939.346490 C =12214.492238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.706 5.706 3 C 0.566 3.434 4 O -0.559 6.559 5 C 0.083 3.917 6 C -0.112 4.112 7 C -0.048 4.048 8 C -0.160 4.160 9 C 0.567 3.433 10 O -0.577 6.577 11 N -0.604 5.604 12 C 0.088 3.912 13 C -0.133 4.133 14 C 0.168 3.832 15 H 0.077 0.923 16 N -0.740 5.740 17 C -0.236 4.236 18 H 0.060 0.940 19 C -0.063 4.063 20 N -0.981 5.981 21 Si 0.955 3.045 22 H -0.272 1.272 23 H -0.301 1.301 24 H -0.253 1.253 25 C 0.092 3.908 26 C 0.152 3.848 27 N -0.464 5.464 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.421 0.579 32 H 0.172 0.828 33 H 0.190 0.810 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.369 0.631 39 H 0.258 0.742 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.432 -3.407 -0.145 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.357 5.357 3 C 0.351 3.649 4 O -0.438 6.438 5 C -0.055 4.055 6 C -0.133 4.133 7 C -0.073 4.073 8 C -0.166 4.166 9 C 0.356 3.644 10 O -0.458 6.458 11 N -0.336 5.336 12 C -0.032 4.032 13 C -0.171 4.171 14 C 0.058 3.942 15 H 0.095 0.905 16 N -0.382 5.382 17 C -0.366 4.366 18 H 0.078 0.922 19 C -0.254 4.254 20 N -0.631 5.631 21 Si 0.783 3.217 22 H -0.198 1.198 23 H -0.229 1.229 24 H -0.178 1.178 25 C -0.034 4.034 26 C -0.009 4.009 27 N -0.175 5.175 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.258 0.742 32 H 0.190 0.810 33 H 0.207 0.793 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.203 0.797 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -32.007 -4.000 0.197 32.257 hybrid contribution 1.743 -0.206 -0.758 1.912 sum -30.264 -4.206 -0.561 30.560 Atomic orbital electron populations 1.21819 0.77538 1.04712 1.02169 1.45715 1.08903 1.08685 1.72385 1.18034 0.85841 0.84417 0.76620 1.90781 1.69243 1.32271 1.51477 1.21492 0.94409 0.90546 0.99058 1.22308 0.94157 0.99841 0.96944 1.22829 0.94330 0.98886 0.91249 1.20980 0.92794 0.96764 1.06021 1.18162 0.86845 0.82088 0.77275 1.90786 1.73056 1.31105 1.50880 1.48459 1.07656 1.14717 1.62739 1.23106 0.97585 0.83679 0.98879 1.23125 0.92143 1.03325 0.98525 1.21424 0.85956 0.92264 0.94562 0.90482 1.42690 1.01557 1.88476 1.05493 1.19034 0.83686 1.40973 0.92945 0.92195 1.25534 0.94723 1.02415 1.02779 1.69888 0.97659 1.59026 1.36531 0.85414 0.77333 0.78292 0.80708 1.19804 1.22851 1.17797 1.22836 0.79075 1.01125 1.00393 1.22997 0.88122 0.98627 0.91109 1.67620 1.09710 1.28260 1.11877 0.92311 0.92259 0.87063 0.74210 0.81037 0.79284 0.87298 0.86967 0.90615 0.86475 0.79715 0.93351 0.93329 0.93815 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.70 127.77 1.37 2.07 16 2 N -0.71 -9.24 5.70 -487.00 -2.78 -12.01 16 3 C 0.57 10.60 7.82 86.93 0.68 11.28 16 4 O -0.56 -13.37 16.31 -3.69 -0.06 -13.44 16 5 C 0.08 1.48 6.75 41.96 0.28 1.76 16 6 C -0.11 -1.64 9.62 22.58 0.22 -1.42 16 7 C -0.05 -0.67 8.23 22.71 0.19 -0.48 16 8 C -0.16 -3.27 5.79 -19.93 -0.12 -3.39 16 9 C 0.57 15.93 7.73 86.83 0.67 16.60 16 10 O -0.58 -21.38 16.84 -3.81 -0.06 -21.44 16 11 N -0.60 -15.66 3.33 -815.01 -2.71 -18.38 16 12 C 0.09 1.39 4.93 86.85 0.43 1.82 16 13 C -0.13 -2.72 6.69 31.99 0.21 -2.51 16 14 C 0.17 5.40 3.59 46.18 0.17 5.57 16 15 H 0.08 2.49 8.12 -2.39 -0.02 2.47 16 16 N -0.74 -31.57 4.98 -317.32 -1.58 -33.15 16 17 C -0.24 -12.78 10.46 84.03 0.88 -11.90 16 18 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 19 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.98 -61.83 13.97 21.65 0.30 -61.53 16 21 Si 0.96 44.03 27.74 68.60 1.90 45.93 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 25 C 0.09 3.12 6.63 86.73 0.57 3.70 16 26 C 0.15 3.05 10.75 85.12 0.92 3.97 16 27 N -0.46 -8.54 9.52 -183.90 -1.75 -10.29 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.42 4.34 8.15 -92.71 -0.76 3.58 16 32 H 0.17 2.00 7.63 -2.91 -0.02 1.98 16 33 H 0.19 1.62 4.11 -2.91 -0.01 1.60 16 34 H 0.11 1.17 6.50 -2.38 -0.02 1.15 16 35 H 0.11 1.08 7.00 -2.39 -0.02 1.06 16 36 H 0.08 1.62 8.00 -2.38 -0.02 1.61 16 37 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.37 15.06 5.57 -92.71 -0.52 14.55 16 39 H 0.26 15.53 8.31 -92.70 -0.77 14.75 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.77 8.03 -2.39 -0.02 1.75 16 42 H 0.18 3.46 7.76 -2.91 -0.02 3.43 16 Total: -1.00 -78.76 352.26 -0.05 -78.81 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.25 Total: 21.55 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 6.93 Total: 23.93 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -8.52 Total: -135.35 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.12 Total: -34.88 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -78.76 -0.05 -78.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019668316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.189 kcal (2) G-P(sol) polarization free energy of solvation -78.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds