Wall clock time and date at job start Fri Apr 10 2020 18:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34783 * 119.99375 * 2 1 4 4 O 1.21504 * 120.00211 * 359.97438 * 3 2 1 5 5 C 1.48226 * 119.99535 * 180.02562 * 3 2 1 6 6 C 1.39620 * 119.65551 * 179.97438 * 5 3 2 7 7 C 1.38544 * 119.25211 * 179.97438 * 6 5 3 8 8 C 1.38593 * 118.55027 * 0.02562 * 7 6 5 9 9 C 1.39585 * 119.24558 * 359.97438 * 8 7 6 10 10 C 1.48222 * 119.65514 * 179.97438 * 9 8 7 11 11 O 1.21509 * 119.99709 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00461 * 179.97438 * 10 9 8 13 13 C 1.47422 * 125.64527 * 0.02776 * 12 10 9 14 14 C 1.54917 * 104.83074 * 204.09182 * 13 12 10 15 15 C 1.55158 * 101.57978 * 322.98980 * 14 13 12 16 16 H 1.09003 * 110.71814 * 277.13679 * 15 14 13 17 17 N 1.46500 * 110.71650 * 153.86610 * 15 14 13 18 18 C 1.36941 * 119.99671 * 154.99950 * 17 15 14 19 19 H 1.08001 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99811 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00146 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99793 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46796 * 60.00411 * 22 20 18 24 24 H 1.48497 * 109.46953 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47114 * 300.00399 * 22 20 18 26 26 C 1.47020 * 125.65281 * 179.97438 * 12 10 9 27 27 N 1.32356 * 119.65516 * 0.25482 * 5 3 2 28 28 H 1.09001 * 109.47103 * 299.99443 * 1 2 3 29 29 H 1.08998 * 109.47581 * 59.99540 * 1 2 3 30 30 H 1.08999 * 109.46890 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00328 * 180.02562 * 2 1 3 32 32 H 1.08003 * 120.37845 * 359.97438 * 6 5 3 33 33 H 1.07996 * 120.73029 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.37557 * 180.02562 * 8 7 6 35 35 H 1.08998 * 110.36873 * 85.25268 * 13 12 10 36 36 H 1.09005 * 110.36491 * 322.92676 * 13 12 10 37 37 H 1.08998 * 111.00524 * 81.06438 * 14 13 12 38 38 H 1.08996 * 111.00376 * 204.87436 * 14 13 12 39 39 H 0.97001 * 120.00302 * 334.99871 * 17 15 14 40 40 H 0.96997 * 119.99991 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.88493 * 59.55540 * 26 12 10 42 42 H 1.09003 * 109.87996 * 298.39630 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5312 2.2195 -0.0005 5 6 3.6211 1.1674 -0.0006 6 6 4.3118 2.3807 -0.0011 7 6 5.6972 2.3710 -0.0011 8 6 6.3511 1.1490 -0.0011 9 6 5.5989 -0.0269 -0.0006 10 6 6.2888 -1.3388 -0.0011 11 8 7.5029 -1.3866 -0.0016 12 7 5.5695 -2.4785 -0.0001 13 6 4.0978 -2.5657 0.0010 14 6 3.7833 -3.9536 0.6132 15 6 4.9296 -4.8195 0.0271 16 1 4.6828 -5.1556 -0.9800 17 7 5.2156 -5.9604 0.9004 18 6 5.7830 -7.0939 0.3822 19 1 6.0193 -7.1469 -0.6703 20 6 6.0546 -8.1748 1.2098 21 7 5.7662 -8.1105 2.4924 22 14 6.8279 -9.7213 0.5027 23 1 8.1457 -9.3870 -0.0947 24 1 7.0138 -10.7210 1.5850 25 1 5.9385 -10.2854 -0.5442 26 6 6.1224 -3.8408 -0.0010 27 7 4.2760 0.0172 -0.0062 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 3.7724 3.3163 -0.0015 33 1 6.2556 3.2954 -0.0011 34 1 7.4302 1.1070 -0.0007 35 1 3.7134 -2.5041 -1.0170 36 1 3.6714 -1.7739 0.6171 37 1 3.8351 -3.9214 1.7015 38 1 2.8103 -4.3156 0.2811 39 1 5.0031 -5.9130 1.8457 40 1 5.9556 -8.8659 3.0705 41 1 6.7444 -3.9891 0.8817 42 1 6.7121 -4.0009 -0.9037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019719004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:37 Heat of formation + Delta-G solvation = -1.976185 kcal Electronic energy + Delta-G solvation = -26310.186158 eV Core-core repulsion = 22484.214490 eV Total energy + Delta-G solvation = -3825.971668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21270 -39.80155 -38.86741 -37.30485 -35.05277 -34.23333 -33.08935 -32.10551 -31.34965 -29.62563 -27.72579 -27.53399 -25.26937 -24.40864 -23.58977 -22.46839 -21.17361 -20.40520 -19.77069 -18.34821 -17.73102 -17.15149 -16.48058 -16.29057 -16.17351 -15.79508 -15.61074 -15.30688 -14.73886 -14.52564 -14.26169 -13.80564 -13.64140 -13.46631 -13.28128 -13.05206 -12.75726 -12.67346 -12.54098 -12.38982 -11.92582 -11.67661 -11.20427 -10.97709 -10.82367 -10.74516 -10.46159 -10.32762 -10.22209 -10.04162 -9.77680 -9.66722 -9.63503 -9.41412 -9.01961 -8.38431 -7.11611 -5.85894 -3.16941 0.15321 0.54181 2.20135 2.74907 2.87607 2.96623 3.40403 3.45265 3.45796 3.61864 3.64325 4.25830 4.40806 4.52702 4.54391 4.59376 4.92291 4.97094 5.01396 5.10656 5.20008 5.24645 5.34629 5.47591 5.51983 5.58798 5.64982 5.69887 5.81109 5.95928 5.99945 6.07971 6.09897 6.27610 6.35224 6.47861 6.61944 6.83543 6.96329 7.25174 7.62304 7.65510 7.79317 8.18083 8.31626 9.43458 9.96581 10.31258 11.35984 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.003084 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.882859 B = 9075.603056 C =10370.335521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.716 5.716 3 C 0.574 3.426 4 O -0.533 6.533 5 C 0.070 3.930 6 C -0.094 4.094 7 C -0.085 4.085 8 C -0.089 4.089 9 C 0.092 3.908 10 C 0.574 3.426 11 O -0.536 6.536 12 N -0.588 5.588 13 C 0.103 3.897 14 C -0.147 4.147 15 C 0.172 3.828 16 H 0.069 0.931 17 N -0.711 5.711 18 C -0.251 4.251 19 H 0.073 0.927 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.080 3.920 27 N -0.429 5.429 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.413 0.587 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 20.821 -5.431 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.368 5.368 3 C 0.359 3.641 4 O -0.409 6.409 5 C -0.070 4.070 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.110 4.110 9 C -0.049 4.049 10 C 0.360 3.640 11 O -0.413 6.413 12 N -0.319 5.319 13 C -0.021 4.021 14 C -0.186 4.186 15 C 0.060 3.940 16 H 0.087 0.913 17 N -0.351 5.351 18 C -0.382 4.382 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.739 3.261 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.045 4.045 27 N -0.144 5.144 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.249 0.751 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.019 20.588 -5.514 22.772 hybrid contribution 1.130 -0.494 -0.009 1.233 sum -6.889 20.094 -5.523 21.948 Atomic orbital electron populations 1.21651 0.78759 1.02966 1.02533 1.45729 1.08083 1.09069 1.73890 1.17834 0.85560 0.84150 0.76571 1.90789 1.68746 1.31256 1.50069 1.21159 0.94273 0.89646 1.01929 1.22296 0.94756 0.99395 0.95005 1.21682 0.93945 0.98682 0.96760 1.22383 1.02837 0.91546 0.94259 1.21259 0.88922 0.94712 0.99999 1.17451 0.86055 0.82171 0.78286 1.90801 1.12633 1.86388 1.51489 1.48362 1.08190 1.05968 1.69391 1.22646 0.79959 0.98343 1.01116 1.23196 1.00063 0.93994 1.01368 1.21208 0.90231 0.87103 0.95487 0.91299 1.42371 1.73405 1.11328 1.07996 1.19227 1.33456 0.91758 0.93741 0.90947 1.24772 1.01536 0.98577 0.95542 1.69646 1.52942 1.31684 1.03426 0.86248 0.79258 0.82843 0.77705 1.21089 1.21639 1.21127 1.23382 0.99800 0.79127 1.02236 1.67736 1.09459 1.28230 1.09021 0.91838 0.91883 0.89981 0.75082 0.82961 0.83108 0.82676 0.91580 0.88964 0.90596 0.90001 0.77841 0.93265 0.90635 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.70 59.85 0.64 1.22 16 2 N -0.72 -6.41 5.70 -67.92 -0.39 -6.79 16 3 C 0.57 6.37 7.81 -12.15 -0.09 6.28 16 4 O -0.53 -7.10 16.32 5.36 0.09 -7.01 16 5 C 0.07 0.75 6.75 -83.02 -0.56 0.19 16 6 C -0.09 -0.82 9.63 -38.95 -0.38 -1.20 16 7 C -0.08 -0.65 10.16 -39.34 -0.40 -1.05 16 8 C -0.09 -0.91 9.63 -38.95 -0.38 -1.28 16 9 C 0.09 1.17 6.72 -83.03 -0.56 0.61 16 10 C 0.57 9.20 7.84 -12.16 -0.10 9.11 16 11 O -0.54 -10.14 16.65 5.36 0.09 -10.05 16 12 N -0.59 -9.25 3.33 -171.49 -0.57 -9.82 16 13 C 0.10 1.29 5.70 -2.53 -0.01 1.27 16 14 C -0.15 -2.10 6.71 -24.58 -0.16 -2.26 16 15 C 0.17 3.16 3.61 -66.10 -0.24 2.92 16 16 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 17 N -0.71 -16.84 5.15 -51.65 -0.27 -17.10 16 18 C -0.25 -6.67 9.96 -15.06 -0.15 -6.82 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.08 1.46 6.62 -3.07 -0.02 1.44 16 27 N -0.43 -4.93 5.85 -6.38 -0.04 -4.96 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.41 3.36 6.78 -40.82 -0.28 3.09 16 32 H 0.15 1.14 7.64 -52.48 -0.40 0.74 16 33 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.16 1.47 7.64 -52.49 -0.40 1.07 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.05 4.76 -51.93 -0.25 0.80 16 37 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.39 9.77 7.76 -40.82 -0.32 9.46 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -33.18 356.04 -7.92 -41.10 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.40 Total: 8.87 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -2.50 Total: 10.13 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -0.54 Total: -65.20 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.18 Total: -17.07 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.18 -7.92 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019719004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.126 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds