Wall clock time and date at job start Fri Apr 10 2020 18:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34783 * 119.99375 * 2 1 4 4 O 1.21504 * 120.00211 * 359.97438 * 3 2 1 5 5 C 1.48226 * 119.99535 * 180.02562 * 3 2 1 6 6 C 1.39620 * 119.65551 * 179.97438 * 5 3 2 7 7 C 1.38544 * 119.25211 * 179.97438 * 6 5 3 8 8 C 1.38593 * 118.55027 * 0.02562 * 7 6 5 9 9 C 1.39585 * 119.24558 * 359.97438 * 8 7 6 10 10 C 1.48222 * 119.65514 * 179.97438 * 9 8 7 11 11 O 1.21509 * 119.99709 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00461 * 179.97438 * 10 9 8 13 13 C 1.47422 * 125.64527 * 0.02776 * 12 10 9 14 14 C 1.54917 * 104.83074 * 204.09182 * 13 12 10 15 15 C 1.55158 * 101.57978 * 322.98980 * 14 13 12 16 16 H 1.09003 * 110.71814 * 277.13679 * 15 14 13 17 17 N 1.46500 * 110.71650 * 153.86610 * 15 14 13 18 18 C 1.36941 * 119.99671 * 154.99950 * 17 15 14 19 19 H 1.08001 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99811 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00146 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99793 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46796 * 60.00411 * 22 20 18 24 24 H 1.48497 * 109.46953 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47114 * 300.00399 * 22 20 18 26 26 C 1.47020 * 125.65281 * 179.97438 * 12 10 9 27 27 N 1.32356 * 119.65516 * 0.25482 * 5 3 2 28 28 H 1.09001 * 109.47103 * 299.99443 * 1 2 3 29 29 H 1.08998 * 109.47581 * 59.99540 * 1 2 3 30 30 H 1.08999 * 109.46890 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00328 * 180.02562 * 2 1 3 32 32 H 1.08003 * 120.37845 * 359.97438 * 6 5 3 33 33 H 1.07996 * 120.73029 * 180.02562 * 7 6 5 34 34 H 1.07998 * 120.37557 * 180.02562 * 8 7 6 35 35 H 1.08998 * 110.36873 * 85.25268 * 13 12 10 36 36 H 1.09005 * 110.36491 * 322.92676 * 13 12 10 37 37 H 1.08998 * 111.00524 * 81.06438 * 14 13 12 38 38 H 1.08996 * 111.00376 * 204.87436 * 14 13 12 39 39 H 0.97001 * 120.00302 * 334.99871 * 17 15 14 40 40 H 0.96997 * 119.99991 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.88493 * 59.55540 * 26 12 10 42 42 H 1.09003 * 109.87996 * 298.39630 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5312 2.2195 -0.0005 5 6 3.6211 1.1674 -0.0006 6 6 4.3118 2.3807 -0.0011 7 6 5.6972 2.3710 -0.0011 8 6 6.3511 1.1490 -0.0011 9 6 5.5989 -0.0269 -0.0006 10 6 6.2888 -1.3388 -0.0011 11 8 7.5029 -1.3866 -0.0016 12 7 5.5695 -2.4785 -0.0001 13 6 4.0978 -2.5657 0.0010 14 6 3.7833 -3.9536 0.6132 15 6 4.9296 -4.8195 0.0271 16 1 4.6828 -5.1556 -0.9800 17 7 5.2156 -5.9604 0.9004 18 6 5.7830 -7.0939 0.3822 19 1 6.0193 -7.1469 -0.6703 20 6 6.0546 -8.1748 1.2098 21 7 5.7662 -8.1105 2.4924 22 14 6.8279 -9.7213 0.5027 23 1 8.1457 -9.3870 -0.0947 24 1 7.0138 -10.7210 1.5850 25 1 5.9385 -10.2854 -0.5442 26 6 6.1224 -3.8408 -0.0010 27 7 4.2760 0.0172 -0.0062 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9501 -0.8400 -0.0004 32 1 3.7724 3.3163 -0.0015 33 1 6.2556 3.2954 -0.0011 34 1 7.4302 1.1070 -0.0007 35 1 3.7134 -2.5041 -1.0170 36 1 3.6714 -1.7739 0.6171 37 1 3.8351 -3.9214 1.7015 38 1 2.8103 -4.3156 0.2811 39 1 5.0031 -5.9130 1.8457 40 1 5.9556 -8.8659 3.0705 41 1 6.7444 -3.9891 0.8817 42 1 6.7121 -4.0009 -0.9037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019719004.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:36 Heat of formation + Delta-G solvation = -26.301929 kcal Electronic energy + Delta-G solvation = -26311.241002 eV Core-core repulsion = 22484.214490 eV Total energy + Delta-G solvation = -3827.026512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10831 -40.87362 -39.83964 -38.66633 -36.02335 -35.74664 -34.00743 -33.29225 -32.69761 -31.08120 -29.21525 -28.19685 -26.54342 -25.43023 -24.92851 -23.70266 -22.06753 -21.59208 -21.02353 -19.42108 -19.12140 -18.60172 -17.51983 -17.17871 -17.13509 -16.79960 -16.63055 -16.37595 -16.27108 -15.70166 -15.26889 -15.19807 -14.90905 -14.73028 -14.39357 -14.12556 -13.89850 -13.73412 -13.43415 -13.23218 -13.13976 -13.04536 -12.86337 -12.57213 -12.46045 -12.15280 -11.99723 -11.74521 -11.50458 -11.25916 -11.12610 -10.99830 -10.59113 -10.51141 -10.14437 -9.68742 -9.09074 -7.96152 -5.26266 -0.66005 -0.24430 1.33182 1.48786 1.51278 1.56998 1.77653 1.84755 2.03414 2.55559 2.72804 2.74870 3.31873 3.39079 3.69598 3.74805 3.77714 3.88645 3.94644 4.03306 4.22655 4.36931 4.37480 4.40787 4.50176 4.55713 4.66475 4.77078 4.88531 4.94485 4.95261 4.98766 5.03665 5.20914 5.21360 5.30978 5.36593 5.40987 5.52954 6.13622 6.25195 6.42481 6.48451 6.93861 7.03122 7.32390 8.04364 8.27606 9.26524 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.017969 B = 0.003084 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.882859 B = 9075.603056 C =10370.335521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.710 5.710 3 C 0.571 3.429 4 O -0.560 6.560 5 C 0.058 3.942 6 C -0.085 4.085 7 C -0.064 4.064 8 C -0.089 4.089 9 C 0.070 3.930 10 C 0.570 3.430 11 O -0.575 6.575 12 N -0.592 5.592 13 C 0.111 3.889 14 C -0.135 4.135 15 C 0.166 3.834 16 H 0.077 0.923 17 N -0.724 5.724 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.967 5.967 22 Si 0.971 3.029 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.274 1.274 26 C 0.091 3.909 27 N -0.431 5.431 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.417 0.583 32 H 0.169 0.831 33 H 0.193 0.807 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.376 0.624 40 H 0.252 0.748 41 H 0.040 0.960 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 22.650 -6.656 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.361 5.361 3 C 0.356 3.644 4 O -0.439 6.439 5 C -0.083 4.083 6 C -0.106 4.106 7 C -0.089 4.089 8 C -0.110 4.110 9 C -0.070 4.070 10 C 0.358 3.642 11 O -0.455 6.455 12 N -0.322 5.322 13 C -0.011 4.011 14 C -0.173 4.173 15 C 0.055 3.945 16 H 0.095 0.905 17 N -0.362 5.362 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.617 5.617 22 Si 0.800 3.200 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.200 1.200 26 C -0.035 4.035 27 N -0.146 5.146 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.254 0.746 32 H 0.187 0.813 33 H 0.211 0.789 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.208 22.432 -6.785 25.180 hybrid contribution 1.455 -0.919 0.334 1.753 sum -7.754 21.513 -6.451 23.760 Atomic orbital electron populations 1.21833 0.77520 1.04732 1.02277 1.45799 1.08994 1.08663 1.72595 1.17944 0.85743 0.84317 0.76404 1.90774 1.69203 1.32159 1.51741 1.21272 0.94204 0.90114 1.02662 1.22598 0.95348 0.99370 0.93293 1.22079 0.93492 0.99114 0.94255 1.22533 1.03077 0.91660 0.93721 1.20807 0.89576 0.93503 1.03112 1.18003 0.85815 0.83254 0.77098 1.90766 1.14414 1.87170 1.53200 1.48412 1.09484 1.04904 1.69430 1.22795 0.77999 0.97644 1.02667 1.23135 0.99607 0.93892 1.00689 1.21420 0.91626 0.86079 0.95326 0.90525 1.42517 1.73439 1.12212 1.08076 1.19631 1.31886 0.92445 0.94003 0.90293 1.25542 1.03114 1.01672 0.95951 1.69797 1.55037 1.32225 1.04619 0.85259 0.78528 0.79334 0.76917 1.20794 1.22336 1.19954 1.22935 0.99263 0.81219 1.00088 1.67520 1.08871 1.28956 1.09231 0.92199 0.92028 0.87265 0.74601 0.81310 0.78950 0.82364 0.89260 0.87343 0.91621 0.87275 0.79155 0.93956 0.94188 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.70 127.77 1.37 2.28 16 2 N -0.71 -11.12 5.70 -487.09 -2.78 -13.90 16 3 C 0.57 11.56 7.81 86.90 0.68 12.24 16 4 O -0.56 -14.02 16.32 -3.73 -0.06 -14.08 16 5 C 0.06 1.11 6.75 42.06 0.28 1.40 16 6 C -0.09 -1.23 9.63 22.68 0.22 -1.01 16 7 C -0.06 -0.74 10.16 22.43 0.23 -0.51 16 8 C -0.09 -1.62 9.63 22.68 0.22 -1.40 16 9 C 0.07 1.69 6.72 42.04 0.28 1.97 16 10 C 0.57 18.31 7.84 86.90 0.68 18.99 16 11 O -0.58 -22.37 16.65 -3.74 -0.06 -22.44 16 12 N -0.59 -18.51 3.33 -814.77 -2.71 -21.22 16 13 C 0.11 2.58 5.70 86.86 0.50 3.08 16 14 C -0.13 -3.63 6.71 31.99 0.21 -3.42 16 15 C 0.17 6.06 3.61 46.18 0.17 6.23 16 16 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 17 N -0.72 -34.79 5.15 -317.33 -1.63 -36.42 16 18 C -0.25 -13.30 9.96 84.03 0.84 -12.46 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 21 N -0.97 -58.02 13.06 21.65 0.28 -57.73 16 22 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.09 3.42 6.62 86.73 0.57 4.00 16 27 N -0.43 -9.06 5.85 -174.09 -1.02 -10.08 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.42 5.70 6.78 -92.71 -0.63 5.07 16 32 H 0.17 1.93 7.64 -2.91 -0.02 1.91 16 33 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.16 2.77 7.64 -2.91 -0.02 2.75 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.11 2.24 4.76 -2.38 -0.01 2.23 16 37 H 0.07 1.94 8.01 -2.39 -0.02 1.92 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.38 19.51 7.76 -92.71 -0.72 18.80 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -74.20 356.04 0.49 -73.72 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.27 Total: 26.89 kcal Atomic # 6 Polarization: 21.20 SS G_CDS: 6.71 Total: 27.91 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -7.86 Total: -139.35 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.12 Total: -36.52 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.20 0.49 -73.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019719004.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.413 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds