Wall clock time and date at job start Fri Apr 10 2020 18:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35470 * 116.99657 * 2 1 4 4 N 1.32427 * 119.11471 * 0.02854 * 3 2 1 5 5 C 1.32139 * 120.97584 * 179.97438 * 4 3 2 6 6 C 1.38809 * 119.21710 * 359.72252 * 5 4 3 7 7 C 1.39461 * 118.38718 * 0.53932 * 6 5 4 8 8 C 1.48456 * 120.51548 * 179.73800 * 7 6 5 9 9 O 1.21486 * 120.00036 * 359.71720 * 8 7 6 10 10 N 1.34770 * 120.00428 * 179.72024 * 8 7 6 11 11 C 1.47351 * 125.52707 * 359.94788 * 10 8 7 12 12 C 1.54934 * 104.89355 * 156.58855 * 11 10 8 13 13 C 1.54798 * 101.50305 * 37.23401 * 12 11 10 14 14 H 1.09001 * 112.64183 * 85.33999 * 13 12 11 15 15 C 1.53271 * 109.74810 * 212.29400 * 13 12 11 16 16 N 1.46586 * 108.15850 * 95.76373 * 15 13 12 17 17 C 1.36935 * 125.30384 * 177.91003 * 16 15 13 18 18 H 1.07997 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00292 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47070 * 60.00197 * 21 19 17 23 23 H 1.48495 * 109.47441 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47170 * 300.00172 * 21 19 17 25 25 C 1.46609 * 109.38802 * 357.88192 * 16 15 13 26 26 C 1.47219 * 125.53397 * 179.97438 * 10 8 7 27 27 H 1.09004 * 112.28237 * 56.20447 * 26 10 8 28 28 N 1.32083 * 119.11452 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47812 * 60.00024 * 1 2 3 30 30 H 1.09003 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47121 * 299.99181 * 1 2 3 32 32 H 1.07990 * 120.38870 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.80251 * 180.27125 * 6 5 4 34 34 H 1.08995 * 110.36053 * 37.72998 * 11 10 8 35 35 H 1.09000 * 110.44483 * 275.48736 * 11 10 8 36 36 H 1.09005 * 111.02267 * 279.17580 * 12 11 10 37 37 H 1.09007 * 111.05640 * 155.30149 * 12 11 10 38 38 H 1.08996 * 109.73183 * 215.44370 * 15 13 12 39 39 H 1.08996 * 109.73628 * 336.07347 * 15 13 12 40 40 H 0.97001 * 120.00502 * 180.02562 * 20 19 17 41 41 H 1.08993 * 109.91866 * 258.45652 * 25 16 15 42 42 H 1.09001 * 109.91027 * 137.17272 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2071 0.0000 4 7 1.3055 2.3064 0.0006 5 6 1.8668 3.5027 0.0011 6 6 3.2514 3.6015 0.0069 7 6 4.0001 2.4249 0.0005 8 6 5.4838 2.4755 0.0004 9 8 6.0550 3.5477 0.0008 10 7 6.1971 1.3321 -0.0002 11 6 5.6329 -0.0291 0.0003 12 6 6.7493 -0.9231 -0.5955 13 6 8.0192 -0.2717 0.0038 14 1 8.2540 -0.6483 0.9994 15 6 9.1856 -0.4087 -0.9811 16 7 9.2698 0.8275 -1.7643 17 6 10.2139 1.0968 -2.7189 18 1 10.9772 0.3669 -2.9445 19 6 10.1897 2.3079 -3.3966 20 7 9.2597 3.1977 -3.1214 21 14 11.4779 2.6757 -4.6984 22 1 11.3954 1.6590 -5.7776 23 1 11.2341 4.0248 -5.2690 24 1 12.8289 2.6358 -4.0831 25 6 8.1852 1.7303 -1.3667 26 6 7.6665 1.2403 -0.0008 27 1 8.1143 1.7743 0.8373 28 7 3.3638 1.2559 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.2555 4.3929 0.0012 33 1 3.7370 4.5661 0.0119 34 1 4.7406 -0.0700 -0.6243 35 1 5.3978 -0.3434 1.0172 36 1 6.7570 -0.8657 -1.6840 37 1 6.6445 -1.9554 -0.2614 38 1 10.1149 -0.5606 -0.4321 39 1 9.0087 -1.2543 -1.6457 40 1 9.2425 4.0439 -3.5952 41 1 7.3828 1.6938 -2.1033 42 1 8.5640 2.7484 -1.2766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076025951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:44 Heat of formation + Delta-G solvation = 42.886221 kcal Electronic energy + Delta-G solvation = -27206.532459 eV Core-core repulsion = 23382.506170 eV Total energy + Delta-G solvation = -3824.026288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54627 -39.97550 -38.60043 -37.65026 -35.03141 -34.06189 -32.16872 -31.63183 -30.61092 -28.68673 -27.81662 -26.92453 -25.38472 -24.53293 -23.86319 -22.48186 -20.78732 -20.05770 -19.13307 -18.38042 -18.08811 -16.95758 -16.69882 -16.60611 -15.75484 -15.54916 -15.25506 -14.78617 -14.67404 -14.39784 -14.02588 -13.84669 -13.52084 -13.27890 -12.78011 -12.62474 -12.28684 -12.10595 -11.91338 -11.62720 -11.52587 -11.31758 -11.15875 -11.05290 -10.97705 -10.74548 -10.42577 -10.20736 -10.02071 -9.92442 -9.73438 -9.66117 -9.27673 -9.20191 -8.55635 -8.17749 -6.78122 -5.59147 -3.01045 0.39629 0.79672 2.25552 2.89590 3.09691 3.44629 3.48371 3.50577 3.72646 3.73531 4.25410 4.39871 4.53968 4.74961 4.91119 4.97168 4.98054 4.99741 5.06712 5.28632 5.33357 5.44857 5.55701 5.67985 5.73110 5.80509 5.87247 5.99045 6.11643 6.17893 6.24367 6.40338 6.45985 6.60237 6.65857 6.71506 6.86847 6.93338 7.53765 7.66874 7.73082 7.85520 7.97894 8.33820 8.43614 9.28110 9.89152 10.51532 11.45370 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.003630 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.513068 B = 7710.729930 C = 8422.007107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.288 6.288 3 C 0.493 3.507 4 N -0.561 5.561 5 C 0.188 3.812 6 C -0.210 4.210 7 C 0.186 3.814 8 C 0.575 3.425 9 O -0.509 6.509 10 N -0.581 5.581 11 C 0.105 3.895 12 C -0.126 4.126 13 C -0.109 4.109 14 H 0.088 0.912 15 C 0.145 3.855 16 N -0.601 5.601 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.166 3.834 26 C 0.112 3.888 27 H 0.086 0.914 28 N -0.496 5.496 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.020 0.980 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.990 -5.026 9.225 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.189 6.189 3 C 0.190 3.810 4 N -0.291 5.291 5 C 0.021 3.979 6 C -0.234 4.234 7 C 0.038 3.962 8 C 0.359 3.641 9 O -0.383 6.383 10 N -0.313 5.313 11 C -0.018 4.018 12 C -0.164 4.164 13 C -0.129 4.129 14 H 0.106 0.894 15 C 0.019 3.981 16 N -0.328 5.328 17 C -0.360 4.360 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.041 3.959 26 C 0.009 3.991 27 H 0.104 0.896 28 N -0.225 5.225 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.197 0.803 33 H 0.183 0.817 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.043 -5.427 9.073 20.912 hybrid contribution 0.644 1.016 -0.728 1.406 sum -17.399 -4.411 8.345 19.795 Atomic orbital electron populations 1.22994 0.75680 1.03584 1.02799 1.86109 1.23321 1.22381 1.87117 1.20707 0.85976 0.84891 0.89389 1.67973 1.41692 0.99449 1.19944 1.23051 0.92201 0.94392 0.88214 1.22832 0.95457 1.01286 1.03790 1.21659 0.95256 0.87874 0.91440 1.17253 0.83993 0.83838 0.79005 1.90866 1.69600 1.28162 1.49705 1.48376 1.07643 1.05701 1.69534 1.22618 0.97537 0.80365 1.01272 1.22876 0.93723 0.98260 1.01560 1.22887 0.96158 0.94553 0.99286 0.89377 1.20984 0.94219 0.90920 0.91960 1.44150 1.32151 1.13147 1.43373 1.18984 1.05183 1.00349 1.11444 0.90390 1.24840 0.98737 0.96763 1.00046 1.69905 1.34367 1.08140 1.43829 0.86182 0.80912 0.77205 0.81329 1.21244 1.21601 1.21127 1.21652 0.89819 0.96828 0.87631 1.23092 0.77831 0.96222 1.01979 0.89606 1.67868 1.07533 1.28927 1.18144 0.91875 0.87824 0.91927 0.80254 0.81654 0.88205 0.91802 0.90128 0.90366 0.95832 0.95601 0.93606 0.96223 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.34 10.36 101.05 1.05 1.38 16 2 O -0.29 -3.42 10.56 -18.10 -0.19 -3.61 16 3 C 0.49 6.58 8.48 -91.36 -0.77 5.80 16 4 N -0.56 -6.50 9.20 -14.74 -0.14 -6.64 16 5 C 0.19 1.85 11.30 -17.21 -0.19 1.66 16 6 C -0.21 -2.60 9.71 -38.91 -0.38 -2.98 16 7 C 0.19 2.89 6.75 -82.65 -0.56 2.33 16 8 C 0.57 10.89 7.67 -12.05 -0.09 10.80 16 9 O -0.51 -11.17 16.53 5.38 0.09 -11.08 16 10 N -0.58 -10.75 2.85 -162.57 -0.46 -11.21 16 11 C 0.10 1.61 5.93 -2.56 -0.02 1.59 16 12 C -0.13 -1.93 6.23 -24.76 -0.15 -2.08 16 13 C -0.11 -1.89 3.91 -88.33 -0.35 -2.23 16 14 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.15 3.02 6.65 -3.85 -0.03 2.99 16 16 N -0.60 -15.75 3.37 -172.24 -0.58 -16.33 16 17 C -0.23 -6.58 10.25 -15.06 -0.15 -6.73 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -27.89 10.17 55.49 0.56 -27.32 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.17 4.28 4.80 -3.41 -0.02 4.26 16 26 C 0.11 2.27 3.87 -65.76 -0.25 2.02 16 27 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 28 N -0.50 -7.42 6.82 -11.29 -0.08 -7.49 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.17 1.88 7.73 -52.49 -0.41 1.48 16 34 H 0.10 1.57 5.95 -51.93 -0.31 1.26 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.42 7.88 -51.93 -0.41 1.01 16 37 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.53 7.74 -51.93 -0.40 0.13 16 40 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 42 H 0.10 2.90 6.22 -51.93 -0.32 2.57 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -34.64 344.47 -8.25 -42.88 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.61 Total: -0.43 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: -2.01 Total: 18.50 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.69 Total: -69.00 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.10 Total: -14.69 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.64 -8.25 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076025951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.770 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds