Wall clock time and date at job start Fri Apr 10 2020 18:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35470 * 116.99657 * 2 1 4 4 N 1.32427 * 119.11471 * 0.02854 * 3 2 1 5 5 C 1.32139 * 120.97584 * 179.97438 * 4 3 2 6 6 C 1.38809 * 119.21710 * 359.72252 * 5 4 3 7 7 C 1.39461 * 118.38718 * 0.53932 * 6 5 4 8 8 C 1.48456 * 120.51548 * 179.73800 * 7 6 5 9 9 O 1.21486 * 120.00036 * 359.71720 * 8 7 6 10 10 N 1.34770 * 120.00428 * 179.72024 * 8 7 6 11 11 C 1.47351 * 125.52707 * 359.94788 * 10 8 7 12 12 C 1.54934 * 104.89355 * 156.58855 * 11 10 8 13 13 C 1.54798 * 101.50305 * 37.23401 * 12 11 10 14 14 H 1.09001 * 112.64183 * 85.33999 * 13 12 11 15 15 C 1.53271 * 109.74810 * 212.29400 * 13 12 11 16 16 N 1.46586 * 108.15850 * 95.76373 * 15 13 12 17 17 C 1.36935 * 125.30384 * 177.91003 * 16 15 13 18 18 H 1.07997 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99730 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00292 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47070 * 60.00197 * 21 19 17 23 23 H 1.48495 * 109.47441 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47170 * 300.00172 * 21 19 17 25 25 C 1.46609 * 109.38802 * 357.88192 * 16 15 13 26 26 C 1.47219 * 125.53397 * 179.97438 * 10 8 7 27 27 H 1.09004 * 112.28237 * 56.20447 * 26 10 8 28 28 N 1.32083 * 119.11452 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47812 * 60.00024 * 1 2 3 30 30 H 1.09003 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47121 * 299.99181 * 1 2 3 32 32 H 1.07990 * 120.38870 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.80251 * 180.27125 * 6 5 4 34 34 H 1.08995 * 110.36053 * 37.72998 * 11 10 8 35 35 H 1.09000 * 110.44483 * 275.48736 * 11 10 8 36 36 H 1.09005 * 111.02267 * 279.17580 * 12 11 10 37 37 H 1.09007 * 111.05640 * 155.30149 * 12 11 10 38 38 H 1.08996 * 109.73183 * 215.44370 * 15 13 12 39 39 H 1.08996 * 109.73628 * 336.07347 * 15 13 12 40 40 H 0.97001 * 120.00502 * 180.02562 * 20 19 17 41 41 H 1.08993 * 109.91866 * 258.45652 * 25 16 15 42 42 H 1.09001 * 109.91027 * 137.17272 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2071 0.0000 4 7 1.3055 2.3064 0.0006 5 6 1.8668 3.5027 0.0011 6 6 3.2514 3.6015 0.0069 7 6 4.0001 2.4249 0.0005 8 6 5.4838 2.4755 0.0004 9 8 6.0550 3.5477 0.0008 10 7 6.1971 1.3321 -0.0002 11 6 5.6329 -0.0291 0.0003 12 6 6.7493 -0.9231 -0.5955 13 6 8.0192 -0.2717 0.0038 14 1 8.2540 -0.6483 0.9994 15 6 9.1856 -0.4087 -0.9811 16 7 9.2698 0.8275 -1.7643 17 6 10.2139 1.0968 -2.7189 18 1 10.9772 0.3669 -2.9445 19 6 10.1897 2.3079 -3.3966 20 7 9.2597 3.1977 -3.1214 21 14 11.4779 2.6757 -4.6984 22 1 11.3954 1.6590 -5.7776 23 1 11.2341 4.0248 -5.2690 24 1 12.8289 2.6358 -4.0831 25 6 8.1852 1.7303 -1.3667 26 6 7.6665 1.2403 -0.0008 27 1 8.1143 1.7743 0.8373 28 7 3.3638 1.2559 -0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.2555 4.3929 0.0012 33 1 3.7370 4.5661 0.0119 34 1 4.7406 -0.0700 -0.6243 35 1 5.3978 -0.3434 1.0172 36 1 6.7570 -0.8657 -1.6840 37 1 6.6445 -1.9554 -0.2614 38 1 10.1149 -0.5606 -0.4321 39 1 9.0087 -1.2543 -1.6457 40 1 9.2425 4.0439 -3.5952 41 1 7.3828 1.6938 -2.1033 42 1 8.5640 2.7484 -1.2766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076025951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:43 Heat of formation + Delta-G solvation = 16.765909 kcal Electronic energy + Delta-G solvation = -27207.665121 eV Core-core repulsion = 23382.506170 eV Total energy + Delta-G solvation = -3825.158950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.57368 -41.40389 -39.72545 -38.97643 -36.75278 -35.19820 -33.99444 -32.61784 -32.27631 -30.45992 -28.71720 -28.33968 -26.76710 -26.25996 -24.92998 -23.79788 -22.40482 -21.57842 -20.61176 -19.38875 -19.31520 -18.87335 -17.94631 -17.57366 -17.13002 -16.97332 -16.49106 -16.40886 -15.92267 -15.59890 -15.22939 -15.10045 -14.91580 -14.79994 -14.34813 -14.19848 -13.77110 -13.52105 -13.24466 -13.02494 -12.88672 -12.77333 -12.59736 -12.40517 -12.36722 -12.20892 -12.05410 -11.86685 -11.71312 -11.58346 -11.42222 -11.40679 -10.73940 -10.29509 -10.22446 -9.68997 -8.91694 -7.78965 -5.24276 -0.69445 -0.11483 1.34480 1.43629 1.48284 1.54811 1.59260 1.78514 2.48730 2.64517 2.81265 3.12293 3.31873 3.46575 3.53869 3.61980 3.78591 3.81254 4.01281 4.14289 4.32132 4.35711 4.41512 4.43450 4.47135 4.55138 4.61034 4.74114 4.78196 4.87365 4.93705 4.99244 5.10241 5.18111 5.25646 5.42738 5.46187 5.48139 5.54771 5.78298 5.99368 6.23828 6.40235 6.73490 6.93694 7.08045 7.77841 8.38811 9.23608 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.003630 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.513068 B = 7710.729930 C = 8422.007107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.301 6.301 3 C 0.486 3.514 4 N -0.554 5.554 5 C 0.209 3.791 6 C -0.209 4.209 7 C 0.161 3.839 8 C 0.566 3.434 9 O -0.555 6.555 10 N -0.585 5.585 11 C 0.110 3.890 12 C -0.117 4.117 13 C -0.092 4.092 14 H 0.132 0.868 15 C 0.138 3.862 16 N -0.624 5.624 17 C -0.244 4.244 18 H 0.089 0.911 19 C -0.071 4.071 20 N -0.950 5.950 21 Si 0.984 3.016 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.272 1.272 25 C 0.187 3.813 26 C 0.115 3.885 27 H 0.081 0.919 28 N -0.514 5.514 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.069 0.931 32 H 0.232 0.768 33 H 0.170 0.830 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.124 0.876 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.244 0.756 41 H -0.024 1.024 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 -6.922 10.272 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.202 6.202 3 C 0.183 3.817 4 N -0.283 5.283 5 C 0.042 3.958 6 C -0.233 4.233 7 C 0.015 3.985 8 C 0.353 3.647 9 O -0.433 6.433 10 N -0.316 5.316 11 C -0.012 4.012 12 C -0.155 4.155 13 C -0.111 4.111 14 H 0.150 0.850 15 C 0.013 3.987 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.263 4.263 20 N -0.599 5.599 21 Si 0.811 3.189 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.198 1.198 25 C 0.060 3.940 26 C 0.011 3.989 27 H 0.099 0.901 28 N -0.243 5.243 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.248 0.752 33 H 0.188 0.812 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.142 0.858 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.053 0.947 41 H -0.006 1.006 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.718 -7.414 10.141 23.379 hybrid contribution 1.055 1.584 -1.057 2.177 sum -18.663 -5.830 9.084 21.560 Atomic orbital electron populations 1.23312 0.73447 1.05609 1.03165 1.86107 1.25493 1.21831 1.86817 1.20880 0.85654 0.85892 0.89292 1.68135 1.41169 0.99562 1.19456 1.23849 0.91341 0.95379 0.85210 1.23037 0.96629 1.00425 1.03192 1.21180 0.93327 0.89523 0.94448 1.17889 0.85749 0.83283 0.77811 1.90823 1.71068 1.29689 1.51707 1.48502 1.06853 1.07100 1.69166 1.22762 0.97217 0.78493 1.02704 1.22878 0.92331 1.00565 0.99694 1.22941 0.95494 0.92038 1.00673 0.84994 1.21248 0.96286 0.88806 0.92343 1.44470 1.31660 1.15309 1.43633 1.19471 1.05639 1.00504 1.11676 0.89292 1.25781 1.01043 0.96806 1.02681 1.70236 1.36484 1.08208 1.44971 0.85080 0.78569 0.76556 0.78687 1.20061 1.22373 1.19818 1.21143 0.88350 0.94814 0.89667 1.22810 0.79292 0.98554 0.98233 0.90070 1.67659 1.08700 1.28717 1.19212 0.91692 0.85068 0.91272 0.75207 0.81202 0.88535 0.89186 0.93114 0.85816 0.94655 0.94610 0.94699 1.00618 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.36 113.37 1.17 1.66 16 2 O -0.30 -6.59 10.56 -87.69 -0.93 -7.51 16 3 C 0.49 12.21 8.48 180.61 1.53 13.74 16 4 N -0.55 -11.47 9.20 -313.44 -2.88 -14.35 16 5 C 0.21 3.56 11.30 84.78 0.96 4.51 16 6 C -0.21 -5.04 9.71 22.70 0.22 -4.82 16 7 C 0.16 5.09 6.75 41.97 0.28 5.37 16 8 C 0.57 22.55 7.67 86.97 0.67 23.22 16 9 O -0.56 -26.20 16.53 -3.67 -0.06 -26.26 16 10 N -0.59 -22.21 2.85 -786.56 -2.24 -24.45 16 11 C 0.11 3.23 5.93 86.88 0.51 3.74 16 12 C -0.12 -3.33 6.23 31.87 0.20 -3.13 16 13 C -0.09 -3.01 3.91 -9.31 -0.04 -3.05 16 14 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 15 C 0.14 5.60 6.65 86.45 0.58 6.17 16 16 N -0.62 -33.68 3.37 -698.85 -2.36 -36.03 16 17 C -0.24 -14.21 10.25 84.03 0.86 -13.35 16 18 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 19 C -0.07 -4.22 5.48 84.86 0.47 -3.76 16 20 N -0.95 -61.44 10.17 21.65 0.22 -61.22 16 21 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 C 0.19 10.21 4.80 86.73 0.42 10.62 16 26 C 0.12 4.81 3.87 46.01 0.18 4.99 16 27 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 28 N -0.51 -15.08 6.82 -302.70 -2.06 -17.14 16 29 H 0.06 0.79 8.09 -2.39 -0.02 0.77 16 30 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 32 H 0.23 1.47 8.06 -2.92 -0.02 1.44 16 33 H 0.17 3.88 7.73 -2.91 -0.02 3.86 16 34 H 0.10 2.98 5.95 -2.39 -0.01 2.97 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.76 7.88 -2.38 -0.02 1.74 16 37 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.40 7.74 -2.39 -0.02 1.38 16 40 H 0.24 15.46 8.31 -92.71 -0.77 14.68 16 41 H -0.02 -1.49 7.94 -2.39 -0.02 -1.51 16 42 H 0.05 2.95 6.22 -2.39 -0.01 2.93 16 Total: -1.00 -82.55 344.47 0.76 -81.78 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.04 Total: 9.54 kcal Atomic # 6 Polarization: 37.92 SS G_CDS: 8.01 Total: 45.92 kcal Atomic # 7 Polarization: -143.86 SS G_CDS: -9.33 Total: -153.19 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.99 Total: -33.77 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -82.55 0.76 -81.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076025951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.550 kcal (2) G-P(sol) polarization free energy of solvation -82.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds