Wall clock time and date at job start Fri Apr 10 2020 18:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.54909 * 111.00603 * 236.11615 * 2 1 3 5 5 N 1.47523 * 104.78433 * 204.90137 * 4 2 1 6 6 C 1.36938 * 125.63702 * 204.15649 * 5 4 2 7 7 H 1.08000 * 119.99838 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99820 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99832 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46730 * 90.00315 * 10 8 6 12 12 H 1.48497 * 109.47255 * 209.99746 * 10 8 6 13 13 H 1.48494 * 109.47029 * 330.00257 * 10 8 6 14 14 C 1.47022 * 108.71559 * 24.12363 * 5 4 2 15 15 C 1.54330 * 107.27093 * 358.93837 * 14 5 4 16 16 H 1.09006 * 110.86580 * 96.24059 * 15 14 5 17 17 N 1.46498 * 110.72074 * 219.44387 * 15 14 5 18 18 C 1.34772 * 120.00049 * 268.52038 * 17 15 14 19 19 O 1.21524 * 120.00003 * 0.02562 * 18 17 15 20 20 C 1.48167 * 120.00314 * 179.97438 * 18 17 15 21 21 C 1.39244 * 119.66173 * 179.97438 * 20 18 17 22 22 C 1.39752 * 118.90717 * 179.97438 * 21 20 18 23 23 C 1.48140 * 120.89284 * 180.02562 * 22 21 20 24 24 N 1.34769 * 120.00113 * 180.02562 * 23 22 21 25 25 O 1.21518 * 119.99765 * 0.02562 * 23 22 21 26 26 C 1.39817 * 118.21994 * 0.02562 * 22 21 20 27 27 C 1.38500 * 119.18837 * 359.97438 * 26 22 21 28 28 N 1.31472 * 121.03243 * 359.73994 * 27 26 22 29 29 H 1.08994 * 109.46941 * 299.30333 * 1 2 3 30 30 H 1.09004 * 109.46932 * 59.30168 * 1 2 3 31 31 H 1.09002 * 109.47107 * 179.29457 * 1 2 3 32 32 H 1.09001 * 110.36668 * 323.71926 * 4 2 1 33 33 H 1.09004 * 110.36307 * 86.04054 * 4 2 1 34 34 H 0.97003 * 120.00159 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.88478 * 239.52488 * 14 5 4 36 36 H 1.08997 * 110.01216 * 118.42984 * 14 5 4 37 37 H 0.97001 * 119.99849 * 88.52387 * 17 15 14 38 38 H 1.08001 * 120.54905 * 359.96144 * 21 20 18 39 39 H 0.97004 * 120.00301 * 0.02562 * 24 23 22 40 40 H 0.97001 * 119.99913 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.40296 * 180.02562 * 26 22 21 42 42 H 1.07999 * 119.48298 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4659 -1.5641 -1.6059 7 1 4.3356 -1.5090 -2.6766 8 6 5.6852 -1.9613 -1.0745 9 7 5.8437 -2.0289 0.2303 10 14 7.1007 -2.4011 -2.2114 11 1 7.9030 -1.1844 -2.4964 12 1 7.9616 -3.4200 -1.5588 13 1 6.5627 -2.9484 -3.4827 14 6 3.4679 -1.2731 0.6969 15 6 2.0861 -0.8074 1.2026 16 1 1.4454 -1.6613 1.4231 17 7 2.2278 0.0502 2.3818 18 6 2.1993 -0.4907 3.6158 19 8 2.0566 -1.6900 3.7504 20 6 2.3431 0.3766 4.8085 21 6 2.3122 -0.1898 6.0802 22 6 2.4498 0.6429 7.1941 23 6 2.4239 0.0871 8.5670 24 7 2.5578 0.9067 9.6284 25 8 2.2819 -1.1078 8.7361 26 6 2.6127 2.0146 6.9780 27 6 2.6324 2.4962 5.6796 28 7 2.5057 1.6841 4.6535 29 1 -0.3633 0.5030 0.8961 30 1 -0.3633 0.5247 -0.8837 31 1 -0.3633 -1.0276 -0.0127 32 1 1.4523 -1.6703 -1.4026 33 1 2.1554 -0.1714 -2.0839 34 1 6.6959 -2.3061 0.6017 35 1 4.2425 -0.5982 1.0611 36 1 3.6670 -2.2871 1.0434 37 1 2.3420 1.0075 2.2743 38 1 2.1837 -1.2550 6.2037 39 1 2.6708 1.8607 9.4935 40 1 2.5412 0.5427 10.5274 41 1 2.7227 2.6902 7.8133 42 1 2.7575 3.5550 5.5072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081066788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:09 Heat of formation + Delta-G solvation = -7.084445 kcal Electronic energy + Delta-G solvation = -26121.923088 eV Core-core repulsion = 22295.729909 eV Total energy + Delta-G solvation = -3826.193179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05157 -39.64220 -38.80654 -37.39368 -34.45769 -33.95145 -32.89339 -32.37319 -31.59941 -30.32996 -27.86243 -25.68695 -25.46967 -24.51512 -23.32221 -22.04565 -20.59560 -19.99262 -19.69374 -18.68516 -17.61220 -17.14948 -16.84194 -16.13713 -16.03051 -15.46808 -15.34431 -14.96333 -14.86501 -14.63274 -14.21622 -14.01447 -13.73296 -13.43237 -13.10327 -12.74361 -12.68868 -12.28091 -11.92968 -11.66343 -11.30220 -10.98990 -10.79167 -10.74695 -10.62551 -10.38224 -10.32150 -10.21162 -10.19604 -9.93467 -9.89475 -9.69042 -9.57487 -9.52326 -8.58795 -8.44102 -6.79473 -5.65057 -3.00263 0.17236 0.58581 2.34893 2.86468 2.95828 3.32048 3.43687 3.48339 3.51065 3.76209 3.98985 4.16982 4.37640 4.52445 4.56118 4.67226 5.02290 5.14005 5.30258 5.35592 5.45996 5.48884 5.59268 5.63424 5.79879 6.02236 6.03595 6.14472 6.19560 6.23256 6.28453 6.38452 6.52623 6.66309 6.77351 6.78112 6.97076 7.36439 7.60771 7.62777 7.73845 7.88379 7.93393 8.29471 8.49283 9.25599 9.86429 10.51432 11.45629 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.003100 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.451227 B = 9029.707238 C = 9955.325375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.117 3.883 16 H 0.091 0.909 17 N -0.687 5.687 18 C 0.566 3.434 19 O -0.526 6.526 20 C 0.092 3.908 21 C -0.056 4.056 22 C -0.101 4.101 23 C 0.565 3.435 24 N -0.847 5.847 25 O -0.523 6.523 26 C -0.127 4.127 27 C 0.097 3.903 28 N -0.439 5.439 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.043 0.957 34 H 0.252 0.748 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.407 0.593 38 H 0.163 0.837 39 H 0.402 0.598 40 H 0.408 0.592 41 H 0.143 0.857 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 14.144 16.151 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.097 0.903 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.047 3.953 15 C 0.012 3.988 16 H 0.109 0.891 17 N -0.337 5.337 18 C 0.349 3.651 19 O -0.402 6.402 20 C -0.047 4.047 21 C -0.078 4.078 22 C -0.112 4.112 23 C 0.350 3.650 24 N -0.412 5.412 25 O -0.398 6.398 26 C -0.148 4.148 27 C -0.062 4.062 28 N -0.151 5.151 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.242 0.758 38 H 0.180 0.820 39 H 0.231 0.769 40 H 0.240 0.760 41 H 0.161 0.839 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.700 12.674 15.300 22.109 hybrid contribution 1.060 0.411 0.693 1.331 sum -8.640 13.085 15.993 22.398 Atomic orbital electron populations 1.21699 0.95027 1.01771 1.01001 1.22623 0.94855 0.99610 0.96247 0.90331 1.21609 0.87599 0.95045 0.94311 1.44423 1.07834 1.79280 1.01729 1.19045 0.89251 1.38569 0.88923 0.90309 1.24831 0.97893 1.01751 0.95998 1.69969 1.24120 1.53318 1.09184 0.86120 0.82350 0.77763 0.79518 1.21675 1.21698 1.20694 1.21475 0.89909 1.00463 0.83421 1.22617 1.00570 0.92826 0.82743 0.89064 1.45752 1.71224 1.11803 1.04875 1.17693 0.77897 0.86803 0.82710 1.90828 1.49515 1.13949 1.85872 1.21384 0.99173 0.90295 0.93839 1.22294 0.92244 1.02821 0.90420 1.20250 1.02925 0.94107 0.93908 1.18104 0.76076 0.86148 0.84690 1.43678 1.76907 1.11561 1.09088 1.90881 1.47893 1.14891 1.86124 1.22499 0.98136 0.94561 0.99558 1.22811 0.95942 1.00169 0.87263 1.67493 1.07929 1.03824 1.35854 0.93122 0.92736 0.92586 0.95956 0.93919 0.93745 0.93067 0.93318 0.75783 0.81959 0.76888 0.75983 0.83947 0.81272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.29 37.16 0.35 -1.53 16 2 C -0.11 -1.94 3.26 -88.47 -0.29 -2.23 16 3 H 0.08 1.30 8.01 -51.93 -0.42 0.88 16 4 C 0.14 2.90 6.71 -2.47 -0.02 2.88 16 5 N -0.61 -15.75 3.40 -169.99 -0.58 -16.33 16 6 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.92 10.31 55.49 0.57 -27.34 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.17 4.38 5.13 -3.06 -0.02 4.37 16 15 C 0.12 2.31 2.79 -66.09 -0.18 2.12 16 16 H 0.09 1.89 7.44 -51.93 -0.39 1.50 16 17 N -0.69 -11.92 5.09 -52.86 -0.27 -12.19 16 18 C 0.57 10.23 7.81 -12.18 -0.10 10.14 16 19 O -0.53 -11.29 15.96 5.34 0.09 -11.21 16 20 C 0.09 1.35 6.75 -83.05 -0.56 0.79 16 21 C -0.06 -0.77 9.20 -38.64 -0.36 -1.13 16 22 C -0.10 -1.03 5.91 -104.68 -0.62 -1.65 16 23 C 0.57 5.77 8.07 -12.20 -0.10 5.67 16 24 N -0.85 -4.25 8.83 30.60 0.27 -3.97 16 25 O -0.52 -7.74 17.28 5.35 0.09 -7.64 16 26 C -0.13 -0.86 9.62 -38.89 -0.37 -1.23 16 27 C 0.10 0.80 11.17 -17.61 -0.20 0.60 16 28 N -0.44 -5.37 9.51 -9.85 -0.09 -5.46 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 32 H 0.02 0.46 8.03 -51.93 -0.42 0.04 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.05 1.43 7.27 -51.93 -0.38 1.05 16 36 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 37 H 0.41 6.23 7.89 -40.82 -0.32 5.91 16 38 H 0.16 2.48 7.33 -52.49 -0.38 2.10 16 39 H 0.40 0.67 6.97 -40.82 -0.28 0.39 16 40 H 0.41 1.56 8.93 -40.82 -0.36 1.20 16 41 H 0.14 0.30 6.53 -52.49 -0.34 -0.04 16 42 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -37.27 355.36 -7.64 -44.91 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.34 Total: 4.55 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -2.71 Total: 11.80 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -0.10 Total: -65.30 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.27 -7.64 -44.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081066788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.821 kcal (2) G-P(sol) polarization free energy of solvation -37.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds