Wall clock time and date at job start Fri Apr 10 2020 18:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.54909 * 111.00603 * 236.11615 * 2 1 3 5 5 N 1.47523 * 104.78433 * 204.90137 * 4 2 1 6 6 C 1.36938 * 125.63702 * 204.15649 * 5 4 2 7 7 H 1.08000 * 119.99838 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99820 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99832 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46730 * 90.00315 * 10 8 6 12 12 H 1.48497 * 109.47255 * 209.99746 * 10 8 6 13 13 H 1.48494 * 109.47029 * 330.00257 * 10 8 6 14 14 C 1.47022 * 108.71559 * 24.12363 * 5 4 2 15 15 C 1.54330 * 107.27093 * 358.93837 * 14 5 4 16 16 H 1.09006 * 110.86580 * 96.24059 * 15 14 5 17 17 N 1.46498 * 110.72074 * 219.44387 * 15 14 5 18 18 C 1.34772 * 120.00049 * 268.52038 * 17 15 14 19 19 O 1.21524 * 120.00003 * 0.02562 * 18 17 15 20 20 C 1.48167 * 120.00314 * 179.97438 * 18 17 15 21 21 C 1.39244 * 119.66173 * 179.97438 * 20 18 17 22 22 C 1.39752 * 118.90717 * 179.97438 * 21 20 18 23 23 C 1.48140 * 120.89284 * 180.02562 * 22 21 20 24 24 N 1.34769 * 120.00113 * 180.02562 * 23 22 21 25 25 O 1.21518 * 119.99765 * 0.02562 * 23 22 21 26 26 C 1.39817 * 118.21994 * 0.02562 * 22 21 20 27 27 C 1.38500 * 119.18837 * 359.97438 * 26 22 21 28 28 N 1.31472 * 121.03243 * 359.73994 * 27 26 22 29 29 H 1.08994 * 109.46941 * 299.30333 * 1 2 3 30 30 H 1.09004 * 109.46932 * 59.30168 * 1 2 3 31 31 H 1.09002 * 109.47107 * 179.29457 * 1 2 3 32 32 H 1.09001 * 110.36668 * 323.71926 * 4 2 1 33 33 H 1.09004 * 110.36307 * 86.04054 * 4 2 1 34 34 H 0.97003 * 120.00159 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.88478 * 239.52488 * 14 5 4 36 36 H 1.08997 * 110.01216 * 118.42984 * 14 5 4 37 37 H 0.97001 * 119.99849 * 88.52387 * 17 15 14 38 38 H 1.08001 * 120.54905 * 359.96144 * 21 20 18 39 39 H 0.97004 * 120.00301 * 0.02562 * 24 23 22 40 40 H 0.97001 * 119.99913 * 180.02562 * 24 23 22 41 41 H 1.07995 * 120.40296 * 180.02562 * 26 22 21 42 42 H 1.07999 * 119.48298 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4659 -1.5641 -1.6059 7 1 4.3356 -1.5090 -2.6766 8 6 5.6852 -1.9613 -1.0745 9 7 5.8437 -2.0289 0.2303 10 14 7.1007 -2.4011 -2.2114 11 1 7.9030 -1.1844 -2.4964 12 1 7.9616 -3.4200 -1.5588 13 1 6.5627 -2.9484 -3.4827 14 6 3.4679 -1.2731 0.6969 15 6 2.0861 -0.8074 1.2026 16 1 1.4454 -1.6613 1.4231 17 7 2.2278 0.0502 2.3818 18 6 2.1993 -0.4907 3.6158 19 8 2.0566 -1.6900 3.7504 20 6 2.3431 0.3766 4.8085 21 6 2.3122 -0.1898 6.0802 22 6 2.4498 0.6429 7.1941 23 6 2.4239 0.0871 8.5670 24 7 2.5578 0.9067 9.6284 25 8 2.2819 -1.1078 8.7361 26 6 2.6127 2.0146 6.9780 27 6 2.6324 2.4962 5.6796 28 7 2.5057 1.6841 4.6535 29 1 -0.3633 0.5030 0.8961 30 1 -0.3633 0.5247 -0.8837 31 1 -0.3633 -1.0276 -0.0127 32 1 1.4523 -1.6703 -1.4026 33 1 2.1554 -0.1714 -2.0839 34 1 6.6959 -2.3061 0.6017 35 1 4.2425 -0.5982 1.0611 36 1 3.6670 -2.2871 1.0434 37 1 2.3420 1.0075 2.2743 38 1 2.1837 -1.2550 6.2037 39 1 2.6708 1.8607 9.4935 40 1 2.5412 0.5427 10.5274 41 1 2.7227 2.6902 7.8133 42 1 2.7575 3.5550 5.5072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081066788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:09 Heat of formation + Delta-G solvation = -38.880027 kcal Electronic energy + Delta-G solvation = -26123.301848 eV Core-core repulsion = 22295.729909 eV Total energy + Delta-G solvation = -3827.571939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99846 -40.85661 -39.91082 -39.00599 -35.72181 -35.20556 -34.38484 -33.41478 -32.54298 -32.15591 -29.61014 -27.42436 -26.46250 -25.76771 -24.74067 -23.09415 -22.08951 -21.59039 -21.04394 -19.60573 -18.90330 -18.43194 -18.14901 -17.44031 -16.95258 -16.86587 -16.42067 -16.33912 -15.99150 -15.89148 -15.59338 -15.26633 -14.99647 -14.73758 -14.55119 -14.40061 -14.09263 -13.71609 -13.34624 -13.13339 -13.04625 -12.88521 -12.59170 -12.21813 -12.10922 -11.87176 -11.71847 -11.66575 -11.48824 -11.39810 -11.19861 -10.80520 -10.75895 -10.70425 -10.43074 -10.02837 -8.93992 -7.85079 -5.23421 -0.66863 -0.30628 1.41830 1.43843 1.47112 1.55853 1.86116 1.94223 2.29776 2.48925 2.76132 3.00709 3.33301 3.52522 3.57450 3.68768 3.74518 3.76575 3.82038 4.03385 4.09313 4.19674 4.46311 4.57226 4.60000 4.65090 4.70846 4.80479 4.88026 5.05291 5.07025 5.15967 5.27393 5.38227 5.43796 5.48918 5.58048 5.74644 5.75450 6.15058 6.27715 6.35733 6.68119 7.03932 7.11665 7.15253 7.74453 8.38719 9.24293 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.003100 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.451227 B = 9029.707238 C = 9955.325375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.133 3.867 5 N -0.627 5.627 6 C -0.240 4.240 7 H 0.091 0.909 8 C -0.073 4.073 9 N -0.955 5.955 10 Si 0.983 3.017 11 H -0.282 1.282 12 H -0.299 1.299 13 H -0.265 1.265 14 C 0.189 3.811 15 C 0.131 3.869 16 H 0.077 0.923 17 N -0.678 5.678 18 C 0.560 3.440 19 O -0.575 6.575 20 C 0.065 3.935 21 C -0.078 4.078 22 C -0.108 4.108 23 C 0.564 3.436 24 N -0.814 5.814 25 O -0.582 6.582 26 C -0.084 4.084 27 C 0.103 3.897 28 N -0.452 5.452 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.243 0.757 35 H 0.017 0.983 36 H -0.010 1.010 37 H 0.418 0.582 38 H 0.128 0.872 39 H 0.422 0.578 40 H 0.418 0.582 41 H 0.205 0.795 42 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 18.586 16.830 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 H 0.110 0.890 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.109 0.891 8 C -0.265 4.265 9 N -0.604 5.604 10 Si 0.811 3.189 11 H -0.208 1.208 12 H -0.226 1.226 13 H -0.190 1.190 14 C 0.062 3.938 15 C 0.025 3.975 16 H 0.095 0.905 17 N -0.328 5.328 18 C 0.346 3.654 19 O -0.454 6.454 20 C -0.071 4.071 21 C -0.100 4.100 22 C -0.119 4.119 23 C 0.348 3.652 24 N -0.380 5.380 25 O -0.462 6.462 26 C -0.104 4.104 27 C -0.057 4.057 28 N -0.165 5.165 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.009 0.991 37 H 0.256 0.744 38 H 0.146 0.854 39 H 0.256 0.744 40 H 0.252 0.748 41 H 0.222 0.778 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.575 17.203 15.970 25.745 hybrid contribution 1.320 -0.832 0.599 1.671 sum -9.255 16.371 16.568 25.064 Atomic orbital electron populations 1.21651 0.91624 1.02259 1.03076 1.22550 0.97384 0.98932 0.92414 0.88967 1.21886 0.85125 0.95862 0.96347 1.44748 1.09566 1.79303 1.01796 1.19537 0.89987 1.37512 0.89875 0.89137 1.25775 1.00849 1.02440 0.97459 1.70252 1.24094 1.54785 1.11236 0.85010 0.78744 0.77279 0.77887 1.20835 1.22636 1.18969 1.21079 0.92414 0.96525 0.83746 1.22206 0.96861 0.93695 0.84702 0.90455 1.45572 1.71097 1.11989 1.04133 1.18359 0.76417 0.86794 0.83874 1.90785 1.51619 1.16321 1.86725 1.20657 1.03149 0.91217 0.92066 1.22084 0.94226 1.01925 0.91736 1.20342 1.03254 0.95464 0.92873 1.18177 0.75741 0.85729 0.85543 1.43422 1.74175 1.12167 1.08245 1.90865 1.50999 1.17518 1.86809 1.23141 0.92980 0.93179 1.01137 1.23756 0.93519 1.01633 0.86788 1.67442 1.08452 1.02602 1.37979 0.91592 0.90036 0.92997 0.95471 0.92259 0.94740 0.96492 0.99137 0.74358 0.85424 0.74392 0.74841 0.77781 0.76336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.29 71.98 0.67 -2.52 16 2 C -0.09 -3.09 3.26 -9.40 -0.03 -3.12 16 3 H 0.09 2.85 8.01 -2.39 -0.02 2.83 16 4 C 0.13 5.40 6.71 86.84 0.58 5.99 16 5 N -0.63 -33.73 3.40 -691.73 -2.35 -36.08 16 6 C -0.24 -13.92 10.28 84.03 0.86 -13.05 16 7 H 0.09 4.90 7.83 -2.91 -0.02 4.87 16 8 C -0.07 -4.34 5.49 84.86 0.47 -3.88 16 9 N -0.95 -61.49 10.31 21.65 0.22 -61.26 16 10 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 14 C 0.19 10.27 5.13 86.73 0.44 10.71 16 15 C 0.13 5.42 2.79 46.18 0.13 5.55 16 16 H 0.08 3.42 7.44 -2.38 -0.02 3.40 16 17 N -0.68 -24.64 5.09 -439.45 -2.24 -26.87 16 18 C 0.56 21.89 7.81 86.88 0.68 22.56 16 19 O -0.58 -27.45 15.96 -3.79 -0.06 -27.51 16 20 C 0.07 1.99 6.75 41.90 0.28 2.27 16 21 C -0.08 -2.27 9.20 22.88 0.21 -2.06 16 22 C -0.11 -2.07 5.91 -19.90 -0.12 -2.19 16 23 C 0.56 10.88 8.07 86.87 0.70 11.58 16 24 N -0.81 -5.33 8.83 -175.41 -1.55 -6.88 16 25 O -0.58 -18.02 17.28 -3.77 -0.07 -18.09 16 26 C -0.08 -0.72 9.62 22.71 0.22 -0.50 16 27 C 0.10 1.21 11.17 84.81 0.95 2.16 16 28 N -0.45 -10.34 9.51 -185.08 -1.76 -12.10 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 32 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 33 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.02 1.02 7.27 -2.39 -0.02 1.00 16 36 H -0.01 -0.62 7.51 -2.39 -0.02 -0.64 16 37 H 0.42 12.91 7.89 -92.71 -0.73 12.18 16 38 H 0.13 4.53 7.33 -2.91 -0.02 4.51 16 39 H 0.42 -0.95 6.97 -92.71 -0.65 -1.60 16 40 H 0.42 1.94 8.93 -92.71 -0.83 1.11 16 41 H 0.21 -0.81 6.53 -2.91 -0.02 -0.83 16 42 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -93.18 355.36 -0.84 -94.02 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -1.11 Total: 11.65 kcal Atomic # 6 Polarization: 27.46 SS G_CDS: 6.04 Total: 33.50 kcal Atomic # 7 Polarization: -135.53 SS G_CDS: -7.67 Total: -143.20 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.13 Total: -45.60 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -93.18 -0.84 -94.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081066788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.136 kcal (2) G-P(sol) polarization free energy of solvation -93.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds