Wall clock time and date at job start Fri Apr 10 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00296 * 2 1 4 4 H 1.09002 * 110.64076 * 29.29718 * 3 2 1 5 5 C 1.54322 * 110.71944 * 266.15692 * 3 2 1 6 6 N 1.47018 * 107.27336 * 219.26540 * 5 3 2 7 7 C 1.36937 * 125.64797 * 178.97600 * 6 5 3 8 8 H 1.08003 * 119.99735 * 179.97438 * 7 6 5 9 9 C 1.38807 * 120.00091 * 359.97438 * 7 6 5 10 10 N 1.31615 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47288 * 89.99308 * 11 9 7 13 13 H 1.48494 * 109.47117 * 209.99684 * 11 9 7 14 14 H 1.48498 * 109.46926 * 329.99641 * 11 9 7 15 15 C 1.47426 * 108.70104 * 358.94171 * 6 5 3 16 16 C 1.54909 * 104.83381 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00194 * 81.06198 * 16 15 6 18 18 N 1.46502 * 111.00219 * 204.91950 * 16 15 6 19 19 C 1.34778 * 119.99724 * 267.19171 * 18 16 15 20 20 O 1.21288 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99962 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47091 * 180.02562 * 21 19 18 23 23 C 1.53782 * 113.61448 * 272.49770 * 22 21 19 24 24 C 1.53781 * 87.08244 * 220.01881 * 23 22 21 25 25 F 1.39897 * 113.61490 * 270.88660 * 24 23 22 26 26 F 1.39892 * 113.61507 * 139.97721 * 24 23 22 27 27 C 1.53780 * 113.61398 * 174.99844 * 22 21 19 28 28 H 1.08992 * 109.47194 * 59.99987 * 1 2 3 29 29 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47355 * 299.99866 * 1 2 3 31 31 H 1.08998 * 109.88021 * 338.68244 * 5 3 2 32 32 H 1.09004 * 109.88163 * 99.84662 * 5 3 2 33 33 H 0.97002 * 120.00386 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.36876 * 142.97187 * 15 6 5 35 35 H 1.09009 * 110.36320 * 265.17860 * 15 6 5 36 36 H 0.96998 * 120.00124 * 87.19913 * 18 16 15 37 37 H 1.09006 * 109.47000 * 300.00308 * 21 19 18 38 38 H 1.08998 * 109.47115 * 60.00051 * 21 19 18 39 39 H 1.08996 * 112.84779 * 43.80361 * 22 21 19 40 40 H 1.09002 * 113.61076 * 334.56748 * 23 22 21 41 41 H 1.08998 * 113.61635 * 105.47002 * 23 22 21 42 42 H 1.08994 * 113.61876 * 254.52892 * 27 22 21 43 43 H 1.09000 * 113.61533 * 25.43580 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3539 2.0183 0.4991 5 6 2.3207 1.7648 -1.4402 6 7 3.6084 2.4734 -1.4043 7 6 4.2483 3.0210 -2.4841 8 1 5.1951 3.5237 -2.3527 9 6 3.6801 2.9299 -3.7472 10 7 2.5265 2.3168 -3.9073 11 14 4.5534 3.6763 -5.2202 12 1 5.4564 2.6646 -5.8253 13 1 3.5487 4.1073 -6.2252 14 1 5.3494 4.8505 -4.7810 15 6 4.0961 2.4973 -0.0133 16 6 3.4103 1.2871 0.6684 17 1 3.9387 0.3608 0.4431 18 7 3.3041 1.4902 2.1153 19 6 4.2696 1.0265 2.9335 20 8 5.2265 0.4415 2.4718 21 6 4.1601 1.2349 4.4220 22 6 5.3770 0.6177 5.1142 23 6 5.2007 -0.8706 5.4589 24 6 5.9151 -0.5669 6.7864 25 9 7.3062 -0.6979 6.7169 26 9 5.3599 -1.2299 7.8860 27 6 5.4242 0.8819 6.6284 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.3923 0.8988 -2.0982 32 1 1.5376 2.4366 -1.7919 33 1 2.1296 2.2529 -4.7901 34 1 5.1798 2.3824 0.0108 35 1 3.8030 3.4266 0.4755 36 1 2.5390 1.9583 2.4845 37 1 4.1226 2.3028 4.6376 38 1 3.2517 0.7579 4.7898 39 1 6.3133 0.8408 4.6027 40 1 4.1598 -1.1699 5.5817 41 1 5.7602 -1.5395 4.8050 42 1 6.1641 1.6277 6.9187 43 1 4.4444 1.0616 7.0710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081865832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:16 Heat of formation + Delta-G solvation = -131.619756 kcal Electronic energy + Delta-G solvation = -27099.025262 eV Core-core repulsion = 22816.742640 eV Total energy + Delta-G solvation = -4282.282622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.02570 -47.36671 -40.01688 -38.59631 -37.64608 -35.91545 -34.06660 -31.90990 -30.41614 -28.70110 -27.07019 -26.55303 -26.15523 -24.43743 -23.36874 -20.87911 -20.55035 -20.16155 -19.92282 -17.74971 -17.40715 -16.88990 -16.77031 -16.49433 -16.34294 -15.56018 -15.50543 -14.84333 -14.64590 -14.38098 -14.23961 -14.17227 -13.75173 -13.66097 -13.46937 -13.27934 -12.92367 -12.85295 -12.67577 -12.22103 -11.92865 -11.59364 -11.55885 -11.43127 -11.27373 -11.14053 -11.03465 -10.82455 -10.77129 -10.67895 -10.17551 -10.02338 -9.82877 -9.74122 -9.15725 -8.78429 -8.60309 -6.91633 -5.75695 -3.10916 2.74636 3.17182 3.24540 3.39434 3.44411 3.45922 3.53679 3.99479 4.05787 4.09638 4.12964 4.48910 4.72274 4.89933 5.07400 5.09404 5.12145 5.16477 5.26493 5.36383 5.39697 5.45970 5.50593 5.54238 5.55117 5.62208 5.68555 5.82768 5.89820 5.99302 6.01880 6.13259 6.48997 6.58991 6.82431 7.22471 7.45009 7.63830 7.68798 7.83546 8.17709 8.36395 9.15068 9.75234 10.38047 11.35688 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002705 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.417007 B =10347.407779 C =11335.231793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.922 5.922 11 Si 0.915 3.085 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.107 0.893 18 N -0.717 5.717 19 C 0.511 3.489 20 O -0.535 6.535 21 C -0.129 4.129 22 C -0.087 4.087 23 C -0.159 4.159 24 C 0.251 3.749 25 F -0.180 7.180 26 F -0.194 7.194 27 C -0.162 4.162 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.253 0.747 34 H 0.049 0.951 35 H 0.022 0.978 36 H 0.396 0.604 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -2.427 21.176 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.125 0.875 18 N -0.367 5.367 19 C 0.297 3.703 20 O -0.412 6.412 21 C -0.169 4.169 22 C -0.106 4.106 23 C -0.197 4.197 24 C 0.215 3.785 25 F -0.160 7.160 26 F -0.175 7.175 27 C -0.200 4.200 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.230 0.770 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.531 -3.027 20.626 20.903 hybrid contribution -0.186 0.718 -0.517 0.904 sum -1.717 -2.309 20.109 20.313 Atomic orbital electron populations 1.22701 0.81719 1.02040 0.99771 1.87903 1.19101 1.27594 1.95058 1.23841 0.92830 0.84038 0.99658 0.92031 1.21577 0.88452 0.97052 0.89083 1.44256 1.21038 1.65910 1.01615 1.19075 1.02604 1.29083 0.84970 0.90138 1.24820 0.97295 1.00672 0.97534 1.69935 1.17854 1.47255 1.21937 0.86076 0.78372 0.78675 0.82381 1.21464 1.21660 1.20630 1.21819 0.97628 0.93703 0.86505 1.22379 0.96234 1.01110 0.77568 0.87547 1.45962 1.24567 1.58780 1.07416 1.20509 0.82606 0.78588 0.88604 1.90732 1.31572 1.41345 1.77539 1.21610 0.99333 1.03526 0.92434 1.22163 1.00407 0.94468 0.93559 1.24178 1.02653 0.99225 0.93605 1.22124 0.75946 0.94888 0.85562 1.93023 1.29896 1.96664 1.96461 1.93000 1.84364 1.83010 1.57133 1.24192 1.04126 0.94334 0.97348 0.93586 0.90258 0.94878 0.91973 0.93393 0.93642 0.93237 0.95989 0.77039 0.88107 0.88507 0.86613 0.87154 0.88372 0.88687 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.86 101.05 1.10 1.57 16 2 O -0.38 -6.78 10.44 -35.23 -0.37 -7.15 16 3 C 0.06 1.01 3.06 -24.90 -0.08 0.94 16 4 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 5 C 0.16 3.91 5.15 -3.07 -0.02 3.90 16 6 N -0.60 -15.25 3.39 -170.07 -0.58 -15.83 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 10 N -0.92 -26.80 10.31 55.49 0.57 -26.23 16 11 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.13 2.72 6.93 -2.53 -0.02 2.70 16 16 C 0.13 2.39 3.15 -65.78 -0.21 2.18 16 17 H 0.11 2.24 7.54 -51.93 -0.39 1.84 16 18 N -0.72 -9.46 5.20 -51.73 -0.27 -9.73 16 19 C 0.51 6.67 7.83 -10.99 -0.09 6.59 16 20 O -0.54 -9.39 15.40 5.55 0.09 -9.30 16 21 C -0.13 -1.01 5.54 -27.88 -0.15 -1.16 16 22 C -0.09 -0.75 3.13 -89.81 -0.28 -1.03 16 23 C -0.16 -1.41 7.42 -25.92 -0.19 -1.60 16 24 C 0.25 2.34 3.28 -25.91 -0.08 2.26 16 25 F -0.18 -2.05 17.38 2.25 0.04 -2.01 16 26 F -0.19 -2.02 17.41 2.25 0.04 -1.98 16 27 C -0.16 -1.09 7.43 -25.92 -0.19 -1.28 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 31 H 0.06 1.70 7.30 -51.93 -0.38 1.32 16 32 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 36 H 0.40 3.91 8.57 -40.82 -0.35 3.56 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.54 7.84 -51.93 -0.41 0.14 16 39 H 0.12 1.22 7.67 -51.93 -0.40 0.82 16 40 H 0.11 0.80 7.90 -51.93 -0.41 0.39 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 361.32 15.07 5.45 5.45 Total: -1.00 -33.48 361.32 -6.99 -40.47 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.47 Total: 1.07 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -0.46 Total: 8.25 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.27 Total: -51.79 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.28 Total: -16.45 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.08 Total: -3.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.48 -6.99 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081865832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.153 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds