Wall clock time and date at job start Fri Apr 10 2020 18:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00296 * 2 1 4 4 H 1.09002 * 110.64076 * 29.29718 * 3 2 1 5 5 C 1.54322 * 110.71944 * 266.15692 * 3 2 1 6 6 N 1.47018 * 107.27336 * 219.26540 * 5 3 2 7 7 C 1.36937 * 125.64797 * 178.97600 * 6 5 3 8 8 H 1.08003 * 119.99735 * 179.97438 * 7 6 5 9 9 C 1.38807 * 120.00091 * 359.97438 * 7 6 5 10 10 N 1.31615 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00040 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47288 * 89.99308 * 11 9 7 13 13 H 1.48494 * 109.47117 * 209.99684 * 11 9 7 14 14 H 1.48498 * 109.46926 * 329.99641 * 11 9 7 15 15 C 1.47426 * 108.70104 * 358.94171 * 6 5 3 16 16 C 1.54909 * 104.83381 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00194 * 81.06198 * 16 15 6 18 18 N 1.46502 * 111.00219 * 204.91950 * 16 15 6 19 19 C 1.34778 * 119.99724 * 267.19171 * 18 16 15 20 20 O 1.21288 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99962 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47091 * 180.02562 * 21 19 18 23 23 C 1.53782 * 113.61448 * 272.49770 * 22 21 19 24 24 C 1.53781 * 87.08244 * 220.01881 * 23 22 21 25 25 F 1.39897 * 113.61490 * 270.88660 * 24 23 22 26 26 F 1.39892 * 113.61507 * 139.97721 * 24 23 22 27 27 C 1.53780 * 113.61398 * 174.99844 * 22 21 19 28 28 H 1.08992 * 109.47194 * 59.99987 * 1 2 3 29 29 H 1.09002 * 109.47542 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47355 * 299.99866 * 1 2 3 31 31 H 1.08998 * 109.88021 * 338.68244 * 5 3 2 32 32 H 1.09004 * 109.88163 * 99.84662 * 5 3 2 33 33 H 0.97002 * 120.00386 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.36876 * 142.97187 * 15 6 5 35 35 H 1.09009 * 110.36320 * 265.17860 * 15 6 5 36 36 H 0.96998 * 120.00124 * 87.19913 * 18 16 15 37 37 H 1.09006 * 109.47000 * 300.00308 * 21 19 18 38 38 H 1.08998 * 109.47115 * 60.00051 * 21 19 18 39 39 H 1.08996 * 112.84779 * 43.80361 * 22 21 19 40 40 H 1.09002 * 113.61076 * 334.56748 * 23 22 21 41 41 H 1.08998 * 113.61635 * 105.47002 * 23 22 21 42 42 H 1.08994 * 113.61876 * 254.52892 * 27 22 21 43 43 H 1.09000 * 113.61533 * 25.43580 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3539 2.0183 0.4991 5 6 2.3207 1.7648 -1.4402 6 7 3.6084 2.4734 -1.4043 7 6 4.2483 3.0210 -2.4841 8 1 5.1951 3.5237 -2.3527 9 6 3.6801 2.9299 -3.7472 10 7 2.5265 2.3168 -3.9073 11 14 4.5534 3.6763 -5.2202 12 1 5.4564 2.6646 -5.8253 13 1 3.5487 4.1073 -6.2252 14 1 5.3494 4.8505 -4.7810 15 6 4.0961 2.4973 -0.0133 16 6 3.4103 1.2871 0.6684 17 1 3.9387 0.3608 0.4431 18 7 3.3041 1.4902 2.1153 19 6 4.2696 1.0265 2.9335 20 8 5.2265 0.4415 2.4718 21 6 4.1601 1.2349 4.4220 22 6 5.3770 0.6177 5.1142 23 6 5.2007 -0.8706 5.4589 24 6 5.9151 -0.5669 6.7864 25 9 7.3062 -0.6979 6.7169 26 9 5.3599 -1.2299 7.8860 27 6 5.4242 0.8819 6.6284 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.3923 0.8988 -2.0982 32 1 1.5376 2.4366 -1.7919 33 1 2.1296 2.2529 -4.7901 34 1 5.1798 2.3824 0.0108 35 1 3.8030 3.4266 0.4755 36 1 2.5390 1.9583 2.4845 37 1 4.1226 2.3028 4.6376 38 1 3.2517 0.7579 4.7898 39 1 6.3133 0.8408 4.6027 40 1 4.1598 -1.1699 5.5817 41 1 5.7602 -1.5395 4.8050 42 1 6.1641 1.6277 6.9187 43 1 4.4444 1.0616 7.0710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081865832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:15 Heat of formation + Delta-G solvation = -155.402399 kcal Electronic energy + Delta-G solvation = -27100.056555 eV Core-core repulsion = 22816.742640 eV Total energy + Delta-G solvation = -4283.313915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.78673 -48.14275 -41.13934 -39.85513 -38.58560 -37.47467 -35.54572 -33.70820 -31.44099 -30.28639 -28.67324 -27.51943 -27.14288 -26.10300 -24.33048 -22.34220 -22.05282 -21.39195 -20.75009 -19.17054 -18.41571 -18.20344 -17.72923 -17.47342 -17.23652 -17.17082 -16.50343 -16.28334 -15.87587 -15.80166 -15.42919 -15.07711 -15.01552 -14.89702 -14.46740 -14.36671 -14.23172 -14.04402 -13.61020 -13.48913 -13.39478 -13.09672 -12.96103 -12.76122 -12.60540 -12.31078 -12.22879 -12.07455 -12.06259 -11.86996 -11.79346 -11.60761 -11.33120 -10.89886 -10.77993 -10.53667 -10.03268 -8.96930 -7.88244 -5.26304 1.45049 1.47692 1.55967 1.73944 2.11682 2.46440 2.57396 2.78706 2.89839 3.30045 3.31741 3.42819 3.45114 3.55821 3.79981 3.94260 3.97178 4.11772 4.26411 4.38983 4.47314 4.48541 4.56799 4.61024 4.61808 4.66654 4.73006 4.79321 4.83802 4.89189 4.89376 4.95115 5.05235 5.33870 5.35927 5.38754 5.52677 5.65754 6.13321 6.33160 6.64828 7.04276 7.37376 7.69728 8.31859 9.21125 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.002705 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.417007 B =10347.407779 C =11335.231793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.077 3.923 4 H 0.099 0.901 5 C 0.172 3.828 6 N -0.623 5.623 7 C -0.247 4.247 8 H 0.083 0.917 9 C -0.063 4.063 10 N -0.949 5.949 11 Si 0.981 3.019 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.131 3.869 16 C 0.151 3.849 17 H 0.070 0.930 18 N -0.703 5.703 19 C 0.506 3.494 20 O -0.588 6.588 21 C -0.114 4.114 22 C -0.091 4.091 23 C -0.162 4.162 24 C 0.234 3.766 25 F -0.199 7.199 26 F -0.201 7.201 27 C -0.138 4.138 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.014 0.986 32 H 0.022 0.978 33 H 0.248 0.752 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.418 0.582 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 -1.107 23.837 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.117 0.883 5 C 0.047 3.953 6 N -0.351 5.351 7 C -0.376 4.376 8 H 0.101 0.899 9 C -0.256 4.256 10 N -0.598 5.598 11 Si 0.808 3.192 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.191 1.191 15 C 0.004 3.996 16 C 0.044 3.956 17 H 0.089 0.911 18 N -0.355 5.355 19 C 0.295 3.705 20 O -0.467 6.467 21 C -0.153 4.153 22 C -0.110 4.110 23 C -0.200 4.200 24 C 0.198 3.802 25 F -0.180 7.180 26 F -0.182 7.182 27 C -0.175 4.175 28 H 0.051 0.949 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.256 0.744 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.972 -1.690 23.350 23.599 hybrid contribution 0.275 0.231 -1.329 1.377 sum -2.697 -1.459 22.021 22.233 Atomic orbital electron populations 1.22978 0.79327 1.03828 1.00790 1.87888 1.21763 1.27137 1.94937 1.23496 0.93686 0.85153 0.95904 0.88348 1.21318 0.87304 0.94475 0.92252 1.44535 1.21741 1.65790 1.03010 1.19455 1.02901 1.28984 0.86215 0.89919 1.25673 0.98179 1.01533 1.00214 1.70160 1.19162 1.48441 1.22010 0.85052 0.77219 0.78117 0.78780 1.21586 1.21671 1.19132 1.21950 0.96901 0.95875 0.84843 1.21737 0.95191 0.98099 0.80600 0.91136 1.45730 1.25739 1.59080 1.04975 1.21560 0.81237 0.76955 0.90754 1.90730 1.33655 1.43508 1.78823 1.21672 1.00211 1.06021 0.87424 1.22071 0.99776 0.94252 0.94920 1.24277 1.03469 0.99304 0.92920 1.22564 0.75083 0.97042 0.85485 1.92983 1.31550 1.96894 1.96540 1.92982 1.84324 1.83432 1.57461 1.24158 1.05870 0.92198 0.95285 0.94901 0.88252 0.91396 0.96765 0.96032 0.94225 0.94912 0.93643 0.74404 0.84646 0.84847 0.89415 0.84970 0.90834 0.87762 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.86 113.37 1.23 1.90 16 2 O -0.40 -13.92 10.44 -148.98 -1.55 -15.47 16 3 C 0.08 2.74 3.06 31.78 0.10 2.84 16 4 H 0.10 2.80 7.71 -2.39 -0.02 2.78 16 5 C 0.17 8.52 5.15 86.73 0.45 8.97 16 6 N -0.62 -32.51 3.39 -691.99 -2.35 -34.86 16 7 C -0.25 -14.08 10.28 84.03 0.86 -13.21 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 10 N -0.95 -57.23 10.31 21.65 0.22 -57.01 16 11 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 15 C 0.13 5.45 6.93 86.85 0.60 6.05 16 16 C 0.15 5.37 3.15 46.38 0.15 5.52 16 17 H 0.07 3.06 7.54 -2.39 -0.02 3.04 16 18 N -0.70 -16.62 5.20 -435.95 -2.27 -18.89 16 19 C 0.51 12.11 7.83 87.66 0.69 12.79 16 20 O -0.59 -20.71 15.40 -3.06 -0.05 -20.76 16 21 C -0.11 -1.28 5.54 29.85 0.17 -1.11 16 22 C -0.09 -1.34 3.13 -10.27 -0.03 -1.38 16 23 C -0.16 -2.64 7.42 31.12 0.23 -2.41 16 24 C 0.23 4.02 3.28 31.12 0.10 4.12 16 25 F -0.20 -4.54 17.38 44.97 0.78 -3.76 16 26 F -0.20 -3.83 17.41 44.97 0.78 -3.04 16 27 C -0.14 -1.35 7.43 31.12 0.23 -1.12 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.25 8.11 -2.38 -0.02 1.23 16 31 H 0.01 0.82 7.30 -2.39 -0.02 0.80 16 32 H 0.02 1.16 7.51 -2.38 -0.02 1.14 16 33 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.42 6.28 8.57 -92.71 -0.79 5.49 16 37 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.13 0.65 7.84 -2.39 -0.02 0.63 16 39 H 0.09 1.82 7.67 -2.39 -0.02 1.80 16 40 H 0.13 1.52 7.90 -2.39 -0.02 1.50 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.15 0.54 8.10 -2.39 -0.02 0.52 16 Total: -1.00 -79.30 361.32 3.06 -76.24 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.23 Total: 9.57 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 5.24 Total: 19.83 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -4.39 Total: -110.75 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.60 Total: -36.23 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 1.56 Total: -6.80 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -79.30 3.06 -76.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081865832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.162 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds