Wall clock time and date at job start Fri Apr 10 2020 18:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34770 * 119.89326 * 2 1 4 4 N 1.30440 * 121.82262 * 180.02562 * 3 2 1 5 5 C 1.34322 * 121.47577 * 359.97438 * 4 3 2 6 6 C 1.48560 * 120.20492 * 179.72296 * 5 4 3 7 7 O 1.21469 * 119.99527 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00196 * 0.02562 * 6 5 4 9 9 C 1.47287 * 136.54599 * 359.62444 * 8 6 5 10 10 C 1.54369 * 87.49795 * 151.46651 * 9 8 6 11 11 H 1.09003 * 114.92362 * 141.75787 * 10 9 8 12 12 C 1.53068 * 112.44995 * 274.14971 * 10 9 8 13 13 C 1.53145 * 109.21265 * 142.78439 * 12 10 9 14 14 N 1.46541 * 108.25018 * 301.59390 * 13 12 10 15 15 C 1.36942 * 119.73562 * 236.43901 * 14 13 12 16 16 H 1.08003 * 120.00105 * 26.62011 * 15 14 13 17 17 C 1.38813 * 119.99975 * 206.61463 * 15 14 13 18 18 N 1.31622 * 120.00098 * 12.74258 * 17 15 14 19 19 Si 1.86801 * 120.00107 * 192.73852 * 17 15 14 20 20 H 1.48496 * 109.46929 * 94.97909 * 19 17 15 21 21 H 1.48498 * 109.47081 * 214.97995 * 19 17 15 22 22 H 1.48503 * 109.47012 * 334.98127 * 19 17 15 23 23 C 1.43238 * 120.57993 * 55.55967 * 14 13 12 24 24 C 1.46472 * 136.54051 * 179.97438 * 8 6 5 25 25 H 1.08998 * 111.43445 * 96.34671 * 24 8 6 26 26 C 1.37922 * 119.58175 * 0.02562 * 5 4 3 27 27 C 1.34987 * 119.88810 * 179.97438 * 2 1 3 28 28 O 1.21902 * 120.71795 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46604 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47045 * 119.99475 * 1 2 3 31 31 H 1.08998 * 109.47220 * 239.99711 * 1 2 3 32 32 H 1.08001 * 119.09216 * 0.02562 * 3 2 1 33 33 H 1.09000 * 113.52863 * 266.09138 * 9 8 6 34 34 H 1.09004 * 113.52558 * 36.72439 * 9 8 6 35 35 H 1.08989 * 109.51624 * 262.70958 * 12 10 9 36 36 H 1.09001 * 109.51035 * 22.86811 * 12 10 9 37 37 H 1.08999 * 109.70840 * 61.28327 * 13 12 10 38 38 H 1.08998 * 109.70805 * 181.90664 * 13 12 10 39 39 H 0.96993 * 120.00076 * 180.02562 * 18 17 15 40 40 H 1.09004 * 108.84012 * 199.44526 * 23 14 13 41 41 H 1.09001 * 107.22889 * 82.07353 * 23 14 13 42 42 H 1.08002 * 120.83629 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4404 1.2123 -0.0005 5 6 4.1799 0.0910 -0.0005 6 6 5.6632 0.1739 -0.0073 7 8 6.3282 -0.8425 -0.0078 8 7 6.2709 1.3769 -0.0129 9 6 5.8488 2.7879 -0.0211 10 6 7.1651 3.1156 0.7156 11 1 7.6438 4.0457 0.4091 12 6 7.0416 2.9541 2.2328 13 6 8.3487 2.3794 2.7864 14 7 8.6005 1.0947 2.1279 15 6 8.7641 -0.0355 2.8837 16 1 8.3077 -0.1028 3.8602 17 6 9.5164 -1.0946 2.3947 18 7 10.2743 -0.9279 1.3316 19 14 9.4533 -2.7564 3.2455 20 1 8.4506 -3.6198 2.5715 21 1 10.7895 -3.4004 3.1734 22 1 9.0698 -2.5700 4.6679 23 6 8.6584 1.0071 0.6994 24 6 7.6495 1.8715 -0.0198 25 1 7.9825 2.1090 -1.0302 26 6 3.5535 -1.1378 -0.0005 27 6 2.1377 -1.1703 0.0005 28 8 1.5394 -2.2324 0.0015 29 1 -0.3632 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.5802 2.0940 0.0004 33 1 5.7908 3.2189 -1.0206 34 1 4.9558 2.9784 0.5742 35 1 6.8494 3.9256 2.6879 36 1 6.2199 2.2753 2.4609 37 1 9.1693 3.0660 2.5786 38 1 8.2577 2.2294 3.8622 39 1 10.7997 -1.6681 0.9896 40 1 8.5057 -0.0309 0.4039 41 1 9.6605 1.3118 0.3976 42 1 4.1282 -2.0522 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084419776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:25 Heat of formation + Delta-G solvation = 59.302457 kcal Electronic energy + Delta-G solvation = -27659.213633 eV Core-core repulsion = 23835.899206 eV Total energy + Delta-G solvation = -3823.314427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91956 -40.45225 -38.12703 -37.47078 -35.38922 -35.28103 -32.13707 -31.12601 -30.17412 -29.49157 -28.03372 -26.87901 -24.86052 -24.38550 -23.78441 -22.70311 -21.00857 -20.23935 -18.82492 -17.87915 -17.54464 -17.20028 -16.64945 -16.30189 -15.73103 -15.55146 -15.39317 -14.62715 -14.27395 -13.88754 -13.79884 -13.58936 -13.47415 -13.27281 -13.18594 -13.02967 -12.86045 -12.59895 -12.35054 -11.88672 -11.43115 -11.07180 -10.66515 -10.63611 -10.61340 -10.57132 -10.40520 -10.38114 -10.13234 -9.87306 -9.75443 -9.50541 -9.04350 -8.69885 -8.27263 -8.10615 -6.52110 -5.62465 -3.07894 0.22492 1.51744 2.15416 2.96407 3.13210 3.50826 3.56876 3.59713 3.71969 3.81119 4.18862 4.27980 4.58327 4.63597 4.74818 4.82492 4.99239 5.14475 5.25317 5.31828 5.51311 5.56351 5.58035 5.61188 5.78834 5.83285 5.89813 6.03045 6.18075 6.24703 6.32088 6.37766 6.46353 6.54705 6.64060 6.82804 7.05098 7.44588 7.55857 7.56567 7.81338 7.97197 8.25985 8.61116 8.64081 9.42892 10.05619 10.50849 11.44632 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.004832 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.630132 B = 5793.145704 C = 7122.433170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.527 5.527 3 C 0.364 3.636 4 N -0.516 5.516 5 C 0.144 3.856 6 C 0.588 3.412 7 O -0.499 6.499 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.119 4.119 11 H 0.091 0.909 12 C -0.114 4.114 13 C 0.147 3.853 14 N -0.581 5.581 15 C -0.257 4.257 16 H 0.061 0.939 17 C 0.014 3.986 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.166 3.834 24 C 0.118 3.882 25 H 0.077 0.923 26 C -0.218 4.218 27 C 0.519 3.481 28 O -0.530 6.530 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.207 0.793 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.252 0.748 40 H 0.101 0.899 41 H 0.028 0.972 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.669 12.511 -4.868 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.246 5.246 3 C 0.079 3.921 4 N -0.239 5.239 5 C 0.023 3.977 6 C 0.374 3.626 7 O -0.372 6.372 8 N -0.345 5.345 9 C -0.013 4.013 10 C -0.138 4.138 11 H 0.109 0.891 12 C -0.153 4.153 13 C 0.020 3.980 14 N -0.303 5.303 15 C -0.386 4.386 16 H 0.079 0.921 17 C -0.185 4.185 18 N -0.547 5.547 19 Si 0.730 3.270 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.038 3.962 24 C 0.014 3.986 25 H 0.095 0.905 26 C -0.244 4.244 27 C 0.318 3.682 28 O -0.407 6.407 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.224 0.776 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.119 0.881 41 H 0.046 0.954 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.086 11.511 -4.949 22.002 hybrid contribution -0.602 -1.539 0.211 1.666 sum -18.687 9.972 -4.738 21.705 Atomic orbital electron populations 1.22180 0.76478 1.04380 1.04923 1.46714 1.10644 1.08299 1.58927 1.24989 0.89335 0.89725 0.88071 1.68423 1.03674 1.29955 1.21890 1.21651 0.95082 0.88691 0.92273 1.17109 0.84441 0.82485 0.78580 1.90904 1.63887 1.33668 1.48753 1.49208 1.10432 1.04244 1.70626 1.23337 0.98521 0.79745 0.99726 1.22817 0.96591 0.97768 0.96611 0.89073 1.21792 1.01084 0.99735 0.92704 1.20753 0.92861 0.88301 0.96078 1.42853 1.83369 1.02976 1.01059 1.19103 1.25624 0.93210 1.00661 0.92090 1.24970 0.96317 0.99129 0.98082 1.70007 1.28885 1.30589 1.25178 0.86308 0.76898 0.84814 0.78931 1.21260 1.21807 1.20590 1.19762 0.92505 1.00367 0.83523 1.22792 0.84234 0.92648 0.98921 0.90542 1.23478 0.92671 1.00862 1.07412 1.17300 0.88653 0.83129 0.79152 1.90944 1.70382 1.28200 1.51199 0.88753 0.89783 0.89747 0.77649 0.90697 0.89646 0.92639 0.92183 0.96144 0.92645 0.93788 0.88134 0.95417 0.81250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.13 59.85 0.61 0.93 16 2 N -0.53 -4.98 2.97 -128.43 -0.38 -5.36 16 3 C 0.36 2.86 11.48 -90.67 -1.04 1.82 16 4 N -0.52 -6.28 8.15 -10.82 -0.09 -6.37 16 5 C 0.14 2.35 6.77 -82.63 -0.56 1.79 16 6 C 0.59 12.03 8.01 -12.00 -0.10 11.93 16 7 O -0.50 -12.59 15.64 5.39 0.08 -12.50 16 8 N -0.61 -11.21 3.36 -188.38 -0.63 -11.85 16 9 C 0.11 1.47 6.97 -11.38 -0.08 1.39 16 10 C -0.12 -1.79 4.51 -90.16 -0.41 -2.19 16 11 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.11 -1.88 5.75 -26.62 -0.15 -2.04 16 13 C 0.15 3.03 6.46 -3.94 -0.03 3.01 16 14 N -0.58 -14.94 2.98 -176.81 -0.53 -15.46 16 15 C -0.26 -7.41 9.49 -15.06 -0.14 -7.56 16 16 H 0.06 1.75 7.84 -52.48 -0.41 1.34 16 17 C 0.01 0.41 4.95 -17.43 -0.09 0.33 16 18 N -0.90 -27.58 10.95 55.49 0.61 -26.97 16 19 Si 0.90 23.62 29.57 -169.99 -5.03 18.59 16 20 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 21 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.17 4.13 4.47 -6.73 -0.03 4.10 16 24 C 0.12 2.24 4.07 -77.70 -0.32 1.93 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 26 C -0.22 -3.59 9.67 -38.41 -0.37 -3.97 16 27 C 0.52 7.56 7.47 -14.88 -0.11 7.45 16 28 O -0.53 -9.23 17.18 5.01 0.09 -9.15 16 29 H 0.09 0.08 7.71 -51.93 -0.40 -0.32 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.21 0.42 7.79 -52.49 -0.41 0.01 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.05 7.09 -51.93 -0.37 0.69 16 35 H 0.05 0.74 8.14 -51.94 -0.42 0.32 16 36 H 0.06 1.11 7.76 -51.93 -0.40 0.71 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 39 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.10 2.96 4.99 -51.93 -0.26 2.70 16 41 H 0.03 0.75 7.91 -51.93 -0.41 0.34 16 42 H 0.17 3.06 7.68 -52.49 -0.40 2.66 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -38.61 344.28 -9.07 -47.69 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.57 Total: -2.74 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: -2.81 Total: 18.93 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.02 Total: -66.01 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.17 Total: -21.65 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.03 Total: 18.59 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.61 -9.07 -47.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084419776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.988 kcal (2) G-P(sol) polarization free energy of solvation -38.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds