Wall clock time and date at job start Fri Apr 10 2020 18:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35471 * 117.00294 * 2 1 4 4 N 1.32425 * 119.11083 * 359.97438 * 3 2 1 5 5 C 1.32140 * 120.97348 * 180.02562 * 4 3 2 6 6 C 1.38806 * 119.21713 * 359.97438 * 5 4 3 7 7 C 1.39458 * 118.39077 * 0.02562 * 6 5 4 8 8 C 1.48463 * 120.51441 * 179.97438 * 7 6 5 9 9 O 1.21478 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99632 * 179.97438 * 8 7 6 11 11 C 1.47810 * 135.01749 * 359.97438 * 10 8 7 12 12 C 1.54647 * 85.79400 * 153.82374 * 11 10 8 13 13 H 1.09003 * 115.01526 * 139.91174 * 12 11 10 14 14 C 1.53015 * 110.83761 * 270.22995 * 12 11 10 15 15 C 1.53108 * 109.44500 * 143.89381 * 14 12 11 16 16 N 1.46622 * 108.00743 * 301.02204 * 15 14 12 17 17 C 1.36937 * 119.88964 * 237.32750 * 16 15 14 18 18 H 1.07995 * 120.00103 * 150.83650 * 17 16 15 19 19 C 1.38810 * 119.99741 * 330.83033 * 17 16 15 20 20 N 1.31614 * 120.00541 * 334.92062 * 19 17 16 21 21 Si 1.86809 * 119.99651 * 154.91807 * 19 17 16 22 22 H 1.48507 * 109.46753 * 60.00350 * 21 19 17 23 23 H 1.48495 * 109.47293 * 300.00484 * 21 19 17 24 24 H 1.48501 * 109.47097 * 180.02562 * 21 19 17 25 25 C 1.45679 * 120.21815 * 57.60043 * 16 15 14 26 26 C 1.46826 * 135.00919 * 180.02562 * 10 8 7 27 27 H 1.09000 * 111.56091 * 94.46441 * 26 10 8 28 28 N 1.32081 * 119.11394 * 180.29944 * 3 2 1 29 29 H 1.09002 * 109.47069 * 300.00517 * 1 2 3 30 30 H 1.09005 * 109.47223 * 59.99937 * 1 2 3 31 31 H 1.08994 * 109.47387 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.38520 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.79871 * 179.97438 * 6 5 4 34 34 H 1.08993 * 113.82016 * 39.60332 * 11 10 8 35 35 H 1.09001 * 113.81904 * 268.04574 * 11 10 8 36 36 H 1.08992 * 109.47273 * 23.90425 * 14 12 11 37 37 H 1.09001 * 109.47437 * 263.88521 * 14 12 11 38 38 H 1.09000 * 109.74970 * 181.39565 * 15 14 12 39 39 H 1.08996 * 109.79356 * 60.67223 * 15 14 12 40 40 H 0.96998 * 120.00040 * 354.28149 * 20 19 17 41 41 H 1.09004 * 108.71614 * 81.47252 * 25 16 15 42 42 H 1.08995 * 108.71373 * 199.48969 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3057 2.3064 -0.0005 5 6 1.8671 3.5026 -0.0010 6 6 3.2517 3.6013 -0.0005 7 6 4.0003 2.4247 0.0000 8 6 5.4841 2.4753 0.0000 9 8 6.0553 3.5474 0.0000 10 7 6.1973 1.3317 0.0011 11 6 5.8639 -0.1083 0.0028 12 6 7.2378 -0.3107 -0.6778 13 1 7.7993 -1.1792 -0.3334 14 6 7.1072 -0.2355 -2.2005 15 6 8.3486 0.4433 -2.7856 16 7 8.4515 1.7831 -2.1989 17 6 8.4778 2.8842 -3.0126 18 1 8.0908 3.8277 -2.6571 19 6 9.0022 2.7877 -4.2942 20 7 9.8902 1.8573 -4.5737 21 14 8.4473 3.9783 -5.6224 22 1 8.7681 5.3676 -5.2072 23 1 6.9818 3.8478 -5.8235 24 1 9.1505 3.6659 -6.8925 25 6 8.5319 1.9464 -0.7535 26 6 7.6276 0.9999 0.0019 27 1 7.9995 0.8332 1.0128 28 7 3.3640 1.2557 -0.0060 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.2558 4.3929 -0.0019 33 1 3.7373 4.5659 -0.0013 34 1 5.0160 -0.3647 -0.6322 35 1 5.7981 -0.5438 0.9999 36 1 6.2204 0.3421 -2.4610 37 1 7.0177 -1.2426 -2.6078 38 1 8.2496 0.5218 -3.8683 39 1 9.2376 -0.1366 -2.5380 40 1 10.2401 1.2929 -3.8668 41 1 9.5618 1.7775 -0.4392 42 1 8.2555 2.9701 -0.5013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084510347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:29 Heat of formation + Delta-G solvation = 60.652200 kcal Electronic energy + Delta-G solvation = -27495.302138 eV Core-core repulsion = 23672.046240 eV Total energy + Delta-G solvation = -3823.255898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54003 -40.45625 -38.68605 -37.66888 -35.52635 -34.14757 -31.76636 -31.62433 -30.96041 -29.02777 -27.77230 -26.83940 -25.41888 -24.07221 -23.74915 -22.82886 -21.17924 -20.50286 -18.81312 -18.38293 -17.73510 -17.16595 -16.68448 -16.51758 -15.89527 -15.58888 -15.43040 -14.79204 -14.48609 -14.26299 -14.10315 -13.86259 -13.48809 -13.45182 -13.24084 -12.85767 -12.49359 -12.32609 -11.85006 -11.74526 -11.62819 -11.41773 -11.10925 -11.00811 -10.83093 -10.66196 -10.45906 -10.17095 -10.01391 -9.92640 -9.67537 -9.28885 -9.27265 -9.12701 -8.40911 -8.23674 -6.77751 -5.98848 -3.14909 0.38933 0.79510 2.25227 2.87980 2.91468 3.55580 3.58103 3.71094 3.72897 3.76402 4.15085 4.37547 4.62273 4.70950 4.76037 4.90914 4.96527 5.02799 5.16222 5.25640 5.27857 5.34064 5.38944 5.54175 5.65128 5.72919 5.74891 5.85966 5.92530 6.10583 6.19522 6.38085 6.43667 6.51321 6.58201 6.73684 6.85711 6.87898 7.11094 7.26003 7.72510 7.94406 8.18152 8.32199 8.67944 9.23148 9.94705 10.34914 11.29471 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004258 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.565450 B = 6575.030545 C = 7158.848607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.289 6.289 3 C 0.494 3.506 4 N -0.560 5.560 5 C 0.187 3.813 6 C -0.211 4.211 7 C 0.187 3.813 8 C 0.590 3.410 9 O -0.514 6.514 10 N -0.604 5.604 11 C 0.112 3.888 12 C -0.112 4.112 13 H 0.091 0.909 14 C -0.118 4.118 15 C 0.149 3.851 16 N -0.590 5.590 17 C -0.341 4.341 18 H 0.055 0.945 19 C -0.024 4.024 20 N -0.918 5.918 21 Si 1.062 2.938 22 H -0.293 1.293 23 H -0.296 1.296 24 H -0.286 1.286 25 C 0.143 3.857 26 C 0.131 3.869 27 H 0.081 0.919 28 N -0.496 5.496 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.019 0.981 40 H 0.268 0.732 41 H 0.020 0.980 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.164 -4.563 11.725 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.190 6.190 3 C 0.191 3.809 4 N -0.290 5.290 5 C 0.021 3.979 6 C -0.235 4.235 7 C 0.038 3.962 8 C 0.375 3.625 9 O -0.388 6.388 10 N -0.338 5.338 11 C -0.011 4.011 12 C -0.131 4.131 13 H 0.109 0.891 14 C -0.158 4.158 15 C 0.023 3.977 16 N -0.313 5.313 17 C -0.470 4.470 18 H 0.073 0.927 19 C -0.226 4.226 20 N -0.559 5.559 21 Si 0.892 3.108 22 H -0.220 1.220 23 H -0.223 1.223 24 H -0.211 1.211 25 C 0.016 3.984 26 C 0.028 3.972 27 H 0.099 0.901 28 N -0.225 5.225 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.189 -4.616 10.100 20.464 hybrid contribution -0.205 0.546 1.815 1.907 sum -17.394 -4.070 11.915 21.473 Atomic orbital electron populations 1.22994 0.75665 1.03577 1.02803 1.86105 1.23328 1.22403 1.87153 1.20616 0.85864 0.84887 0.89520 1.67974 1.41664 0.99434 1.19917 1.23045 0.92176 0.94405 0.88276 1.22832 0.95510 1.01282 1.03863 1.21665 0.95203 0.87809 0.91485 1.17165 0.83828 0.83336 0.78148 1.90816 1.69677 1.28195 1.50150 1.49593 1.08999 1.05369 1.69789 1.23610 0.98603 0.78516 1.00356 1.22936 0.95837 0.96827 0.97545 0.89124 1.21902 1.01827 0.99935 0.92103 1.20877 0.92446 0.85280 0.99090 1.43575 1.85553 1.02567 0.99601 1.20000 1.38094 0.90743 0.98191 0.92719 1.25767 0.95361 1.02268 0.99175 1.70781 1.24794 1.23244 1.37038 0.83573 0.75697 0.75144 0.76423 1.21956 1.22301 1.21125 1.20263 0.94373 0.98131 0.85630 1.22589 0.81557 0.94156 0.98887 0.90095 1.67625 1.07775 1.29345 1.17719 0.91952 0.91850 0.87820 0.80244 0.81758 0.88892 0.90290 0.92111 0.92505 0.89808 0.96299 0.92133 0.96261 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 10.36 101.05 1.05 1.40 16 2 O -0.29 -3.57 10.56 -18.11 -0.19 -3.76 16 3 C 0.49 6.87 8.48 -91.36 -0.77 6.09 16 4 N -0.56 -6.79 9.20 -14.74 -0.14 -6.93 16 5 C 0.19 1.95 11.30 -17.21 -0.19 1.76 16 6 C -0.21 -2.74 9.71 -38.92 -0.38 -3.12 16 7 C 0.19 3.00 6.79 -82.65 -0.56 2.43 16 8 C 0.59 11.20 7.99 -12.05 -0.10 11.10 16 9 O -0.51 -11.23 15.56 5.38 0.08 -11.14 16 10 N -0.60 -10.75 3.35 -174.64 -0.58 -11.34 16 11 C 0.11 1.63 7.04 -3.00 -0.02 1.60 16 12 C -0.11 -1.77 4.39 -89.96 -0.40 -2.17 16 13 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.12 -2.22 5.66 -26.67 -0.15 -2.37 16 15 C 0.15 3.48 4.67 -3.92 -0.02 3.46 16 16 N -0.59 -15.16 2.84 -174.85 -0.50 -15.66 16 17 C -0.34 -9.94 9.41 -15.06 -0.14 -10.08 16 18 H 0.06 1.68 7.91 -52.49 -0.42 1.26 16 19 C -0.02 -0.71 4.65 -17.43 -0.08 -0.79 16 20 N -0.92 -27.80 12.37 55.49 0.69 -27.11 16 21 Si 1.06 26.29 29.99 -169.99 -5.10 21.20 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.14 3.19 6.20 -5.42 -0.03 3.16 16 26 C 0.13 2.33 4.23 -69.39 -0.29 2.04 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 N -0.50 -7.70 8.15 -11.29 -0.09 -7.80 16 29 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.16 1.97 7.73 -52.48 -0.41 1.57 16 34 H 0.09 1.41 7.02 -51.93 -0.36 1.05 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.27 7.69 -51.93 -0.40 0.87 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 2.23 6.15 -51.93 -0.32 1.91 16 39 H 0.02 0.44 7.99 -51.93 -0.42 0.02 16 40 H 0.27 8.13 6.85 -40.82 -0.28 7.85 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.80 6.36 -51.93 -0.33 1.47 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -35.10 345.01 -8.25 -43.35 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.52 Total: -0.54 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: -2.09 Total: 14.53 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -0.62 Total: -68.83 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.11 Total: -14.90 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.10 Total: 21.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.10 -8.25 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084510347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.998 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds