Wall clock time and date at job start Fri Apr 10 2020 18:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35471 * 117.00294 * 2 1 4 4 N 1.32425 * 119.11083 * 359.97438 * 3 2 1 5 5 C 1.32140 * 120.97348 * 180.02562 * 4 3 2 6 6 C 1.38806 * 119.21713 * 359.97438 * 5 4 3 7 7 C 1.39458 * 118.39077 * 0.02562 * 6 5 4 8 8 C 1.48463 * 120.51441 * 179.97438 * 7 6 5 9 9 O 1.21478 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99632 * 179.97438 * 8 7 6 11 11 C 1.47810 * 135.01749 * 359.97438 * 10 8 7 12 12 C 1.54647 * 85.79400 * 153.82374 * 11 10 8 13 13 H 1.09003 * 115.01526 * 139.91174 * 12 11 10 14 14 C 1.53015 * 110.83761 * 270.22995 * 12 11 10 15 15 C 1.53108 * 109.44500 * 143.89381 * 14 12 11 16 16 N 1.46622 * 108.00743 * 301.02204 * 15 14 12 17 17 C 1.36937 * 119.88964 * 237.32750 * 16 15 14 18 18 H 1.07995 * 120.00103 * 150.83650 * 17 16 15 19 19 C 1.38810 * 119.99741 * 330.83033 * 17 16 15 20 20 N 1.31614 * 120.00541 * 334.92062 * 19 17 16 21 21 Si 1.86809 * 119.99651 * 154.91807 * 19 17 16 22 22 H 1.48507 * 109.46753 * 60.00350 * 21 19 17 23 23 H 1.48495 * 109.47293 * 300.00484 * 21 19 17 24 24 H 1.48501 * 109.47097 * 180.02562 * 21 19 17 25 25 C 1.45679 * 120.21815 * 57.60043 * 16 15 14 26 26 C 1.46826 * 135.00919 * 180.02562 * 10 8 7 27 27 H 1.09000 * 111.56091 * 94.46441 * 26 10 8 28 28 N 1.32081 * 119.11394 * 180.29944 * 3 2 1 29 29 H 1.09002 * 109.47069 * 300.00517 * 1 2 3 30 30 H 1.09005 * 109.47223 * 59.99937 * 1 2 3 31 31 H 1.08994 * 109.47387 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.38520 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.79871 * 179.97438 * 6 5 4 34 34 H 1.08993 * 113.82016 * 39.60332 * 11 10 8 35 35 H 1.09001 * 113.81904 * 268.04574 * 11 10 8 36 36 H 1.08992 * 109.47273 * 23.90425 * 14 12 11 37 37 H 1.09001 * 109.47437 * 263.88521 * 14 12 11 38 38 H 1.09000 * 109.74970 * 181.39565 * 15 14 12 39 39 H 1.08996 * 109.79356 * 60.67223 * 15 14 12 40 40 H 0.96998 * 120.00040 * 354.28149 * 20 19 17 41 41 H 1.09004 * 108.71614 * 81.47252 * 25 16 15 42 42 H 1.08995 * 108.71373 * 199.48969 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3057 2.3064 -0.0005 5 6 1.8671 3.5026 -0.0010 6 6 3.2517 3.6013 -0.0005 7 6 4.0003 2.4247 0.0000 8 6 5.4841 2.4753 0.0000 9 8 6.0553 3.5474 0.0000 10 7 6.1973 1.3317 0.0011 11 6 5.8639 -0.1083 0.0028 12 6 7.2378 -0.3107 -0.6778 13 1 7.7993 -1.1792 -0.3334 14 6 7.1072 -0.2355 -2.2005 15 6 8.3486 0.4433 -2.7856 16 7 8.4515 1.7831 -2.1989 17 6 8.4778 2.8842 -3.0126 18 1 8.0908 3.8277 -2.6571 19 6 9.0022 2.7877 -4.2942 20 7 9.8902 1.8573 -4.5737 21 14 8.4473 3.9783 -5.6224 22 1 8.7681 5.3676 -5.2072 23 1 6.9818 3.8478 -5.8235 24 1 9.1505 3.6659 -6.8925 25 6 8.5319 1.9464 -0.7535 26 6 7.6276 0.9999 0.0019 27 1 7.9995 0.8332 1.0128 28 7 3.3640 1.2557 -0.0060 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.2558 4.3929 -0.0019 33 1 3.7373 4.5659 -0.0013 34 1 5.0160 -0.3647 -0.6322 35 1 5.7981 -0.5438 0.9999 36 1 6.2204 0.3421 -2.4610 37 1 7.0177 -1.2426 -2.6078 38 1 8.2496 0.5218 -3.8683 39 1 9.2376 -0.1366 -2.5380 40 1 10.2401 1.2929 -3.8668 41 1 9.5618 1.7775 -0.4392 42 1 8.2555 2.9701 -0.5013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084510347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:28 Heat of formation + Delta-G solvation = 33.865578 kcal Electronic energy + Delta-G solvation = -27496.463693 eV Core-core repulsion = 23672.046240 eV Total energy + Delta-G solvation = -3824.417453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59514 -41.79139 -39.76839 -38.95571 -37.41308 -35.20199 -33.65060 -32.73810 -32.62488 -30.54788 -28.61814 -28.45110 -26.55609 -25.65638 -25.15481 -24.26470 -22.75068 -21.89526 -20.07939 -19.64230 -19.39426 -18.54934 -17.83433 -17.61602 -17.25104 -16.96307 -16.57181 -16.14376 -15.88815 -15.63927 -15.47917 -15.41395 -15.09300 -14.74574 -14.67946 -14.39382 -14.07152 -13.56919 -13.30580 -12.97124 -12.85341 -12.63196 -12.56231 -12.40378 -12.36014 -12.07649 -12.05297 -11.94847 -11.79098 -11.59372 -11.42320 -10.96080 -10.50729 -10.36844 -10.25056 -9.72266 -8.90877 -8.26978 -5.42187 -0.70902 -0.14540 1.33058 1.51497 1.58352 1.61137 1.66957 1.78787 2.60229 2.63005 2.76399 3.07304 3.15641 3.35224 3.45649 3.54188 3.77396 3.81543 3.97941 4.09371 4.22540 4.25507 4.37657 4.39810 4.41173 4.52745 4.56878 4.63791 4.70324 4.78218 4.82360 4.91118 4.96396 5.02615 5.10741 5.12487 5.24796 5.42857 5.52962 5.84349 5.95711 6.39871 6.59556 6.70616 6.95657 7.09390 7.79471 8.16947 8.96988 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004258 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.565450 B = 6575.030545 C = 7158.848607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.302 6.302 3 C 0.485 3.515 4 N -0.554 5.554 5 C 0.207 3.793 6 C -0.214 4.214 7 C 0.161 3.839 8 C 0.578 3.422 9 O -0.561 6.561 10 N -0.612 5.612 11 C 0.128 3.872 12 C -0.102 4.102 13 H 0.134 0.866 14 C -0.107 4.107 15 C 0.153 3.847 16 N -0.606 5.606 17 C -0.352 4.352 18 H 0.028 0.972 19 C -0.067 4.067 20 N -0.935 5.935 21 Si 1.107 2.893 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.282 1.282 25 C 0.144 3.856 26 C 0.124 3.876 27 H 0.118 0.882 28 N -0.514 5.514 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.231 0.769 33 H 0.168 0.832 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.021 0.979 40 H 0.257 0.743 41 H 0.020 0.980 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.584 -5.853 12.759 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.182 3.818 4 N -0.284 5.284 5 C 0.040 3.960 6 C -0.237 4.237 7 C 0.014 3.986 8 C 0.365 3.635 9 O -0.439 6.439 10 N -0.345 5.345 11 C 0.006 3.994 12 C -0.121 4.121 13 H 0.152 0.848 14 C -0.146 4.146 15 C 0.028 3.972 16 N -0.331 5.331 17 C -0.482 4.482 18 H 0.045 0.955 19 C -0.264 4.264 20 N -0.576 5.576 21 Si 0.932 3.068 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.207 1.207 25 C 0.018 3.982 26 C 0.021 3.979 27 H 0.136 0.864 28 N -0.243 5.243 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.247 0.753 33 H 0.186 0.814 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -19.629 -5.973 11.167 23.359 hybrid contribution 0.486 0.951 1.524 1.861 sum -19.142 -5.022 12.691 23.510 Atomic orbital electron populations 1.23311 0.73425 1.05623 1.03143 1.86102 1.25517 1.21869 1.86863 1.20821 0.85630 0.85878 0.89441 1.68129 1.41164 0.99543 1.19538 1.23829 0.91389 0.95385 0.85379 1.23033 0.96685 1.00499 1.03511 1.21338 0.93792 0.89313 0.94106 1.17716 0.85320 0.83065 0.77413 1.90775 1.71000 1.29749 1.52394 1.49834 1.09083 1.06567 1.69017 1.23696 0.97364 0.76302 1.01988 1.22925 0.97161 0.97047 0.94992 0.84834 1.21727 0.97815 1.00409 0.94626 1.20783 0.94758 0.84658 0.97021 1.43748 1.85979 1.02576 1.00777 1.20039 1.37689 0.91178 0.99295 0.95455 1.27007 0.94985 1.03344 1.01078 1.70886 1.26064 1.24153 1.36520 0.82956 0.75666 0.73978 0.74160 1.20584 1.21366 1.20704 1.20262 0.95637 0.97920 0.84366 1.22690 0.81101 0.93924 1.00221 0.86425 1.67459 1.08858 1.29179 1.18821 0.91269 0.91752 0.85009 0.75304 0.81424 0.89404 0.86641 0.94901 0.89343 0.93667 0.96056 0.93343 0.96267 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.36 113.37 1.17 1.69 16 2 O -0.30 -6.89 10.56 -87.70 -0.93 -7.81 16 3 C 0.49 12.70 8.48 180.61 1.53 14.23 16 4 N -0.55 -12.07 9.20 -313.44 -2.88 -14.96 16 5 C 0.21 3.76 11.30 84.78 0.96 4.72 16 6 C -0.21 -5.37 9.71 22.70 0.22 -5.15 16 7 C 0.16 5.17 6.79 41.97 0.28 5.45 16 8 C 0.58 22.52 7.99 86.97 0.70 23.21 16 9 O -0.56 -25.88 15.56 -3.65 -0.06 -25.93 16 10 N -0.61 -21.53 3.35 -824.75 -2.76 -24.29 16 11 C 0.13 3.38 7.04 86.34 0.61 3.99 16 12 C -0.10 -2.95 4.39 -10.31 -0.05 -3.00 16 13 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 14 C -0.11 -3.91 5.66 30.64 0.17 -3.73 16 15 C 0.15 7.29 4.67 86.39 0.40 7.70 16 16 N -0.61 -32.36 2.84 -707.11 -2.01 -34.37 16 17 C -0.35 -21.49 9.41 84.03 0.79 -20.69 16 18 H 0.03 1.79 7.91 -2.91 -0.02 1.77 16 19 C -0.07 -4.03 4.65 84.86 0.39 -3.63 16 20 N -0.93 -58.19 12.37 21.65 0.27 -57.93 16 21 Si 1.11 54.35 29.99 68.60 2.06 56.41 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.14 6.65 6.20 85.93 0.53 7.19 16 26 C 0.12 4.26 4.23 43.87 0.19 4.45 16 27 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 28 N -0.51 -15.50 8.15 -302.70 -2.47 -17.97 16 29 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 30 H 0.06 0.84 8.09 -2.38 -0.02 0.82 16 31 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.17 4.02 7.73 -2.91 -0.02 4.00 16 34 H 0.09 2.48 7.02 -2.39 -0.02 2.47 16 35 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.03 1.37 7.69 -2.39 -0.02 1.36 16 37 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.04 2.48 6.15 -2.39 -0.01 2.47 16 39 H 0.02 1.00 7.99 -2.39 -0.02 0.98 16 40 H 0.26 16.12 6.85 -92.71 -0.64 15.49 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.04 2.05 6.36 -2.39 -0.02 2.03 16 Total: -1.00 -82.15 345.01 0.31 -81.84 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.18 Total: 8.58 kcal Atomic # 6 Polarization: 28.52 SS G_CDS: 7.91 Total: 36.42 kcal Atomic # 7 Polarization: -139.66 SS G_CDS: -9.85 Total: -149.51 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.98 Total: -33.74 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 2.06 Total: 56.41 kcal Total: -82.15 0.31 -81.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084510347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.705 kcal (2) G-P(sol) polarization free energy of solvation -82.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds