Wall clock time and date at job start Fri Apr 10 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00144 * 2 1 4 4 C 1.52994 * 109.47368 * 264.93913 * 3 2 1 5 5 H 1.08995 * 112.96423 * 294.03259 * 4 3 2 6 6 C 1.53941 * 113.77198 * 65.71137 * 4 3 2 7 7 C 1.53950 * 86.29245 * 137.90854 * 6 4 3 8 8 N 1.47578 * 113.76980 * 162.35752 * 4 3 2 9 9 C 1.36936 * 134.49762 * 41.06140 * 8 4 3 10 10 H 1.07997 * 119.99517 * 4.68679 * 9 8 4 11 11 C 1.38808 * 120.00253 * 184.68009 * 9 8 4 12 12 N 1.31617 * 120.00321 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99775 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46951 * 90.00393 * 13 11 9 15 15 H 1.48499 * 109.47006 * 210.00255 * 13 11 9 16 16 H 1.48500 * 109.47117 * 330.00292 * 13 11 9 17 17 C 1.34776 * 120.00342 * 180.02562 * 2 1 3 18 18 O 1.21550 * 120.00348 * 183.72565 * 17 2 1 19 19 C 1.47856 * 119.99467 * 3.73092 * 17 2 1 20 20 C 1.39669 * 120.49314 * 329.27985 * 19 17 2 21 21 N 1.31741 * 120.87908 * 180.02562 * 20 19 17 22 22 C 1.31760 * 122.04290 * 359.97438 * 21 20 19 23 23 C 1.39632 * 120.87991 * 359.73916 * 22 21 20 24 24 C 1.47856 * 120.48784 * 180.28197 * 23 22 21 25 25 N 1.34765 * 120.00098 * 0.25335 * 24 23 22 26 26 O 1.21557 * 119.99886 * 180.24930 * 24 23 22 27 27 C 1.39737 * 120.48960 * 149.30863 * 19 17 2 28 28 H 1.08998 * 109.47041 * 273.76100 * 1 2 3 29 29 H 1.08992 * 109.47386 * 33.76123 * 1 2 3 30 30 H 1.09003 * 109.47232 * 153.76663 * 1 2 3 31 31 H 1.09007 * 109.46765 * 24.93816 * 3 2 1 32 32 H 1.08999 * 109.47271 * 144.93229 * 3 2 1 33 33 H 1.09002 * 113.74622 * 252.25411 * 6 4 3 34 34 H 1.09001 * 113.74219 * 23.45521 * 6 4 3 35 35 H 1.09001 * 113.76734 * 90.69635 * 7 6 4 36 36 H 1.08995 * 113.77077 * 221.98250 * 7 6 4 37 37 H 0.97004 * 120.00306 * 179.97438 * 12 11 9 38 38 H 1.07997 * 119.55844 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.55688 * 179.97438 * 22 21 20 40 40 H 0.97007 * 120.00524 * 359.97438 * 25 24 23 41 41 H 0.97005 * 120.00041 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.92118 * 359.95112 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5627 1.6468 -1.4368 5 1 3.2726 0.9556 -1.8910 6 6 1.3447 1.9581 -2.3253 7 6 2.1713 3.1354 -2.8736 8 7 2.9256 3.0674 -1.6041 9 6 3.6633 3.9618 -0.8755 10 1 4.1892 3.6341 0.0090 11 6 3.7354 5.2896 -1.2738 12 7 3.0942 5.6891 -2.3515 13 14 4.7425 6.5094 -0.2801 14 1 6.1348 6.5379 -0.7957 15 1 4.1419 7.8621 -0.4014 16 1 4.7513 6.0978 1.1467 17 6 2.1389 -1.1672 -0.0005 18 8 3.3525 -1.1683 0.0679 19 6 1.4019 -2.4462 -0.0844 20 6 0.1190 -2.5617 0.4554 21 7 -0.5443 -3.6978 0.3854 22 6 -0.0374 -4.7688 -0.1907 23 6 1.2366 -4.7404 -0.7616 24 6 1.7945 -5.9457 -1.4114 25 7 1.0704 -7.0812 -1.4602 26 8 2.9063 -5.9123 -1.9016 27 6 1.9790 -3.5576 -0.7045 28 1 -0.3633 0.0674 1.0254 29 1 -0.3634 0.8543 -0.5711 30 1 -0.3634 -0.9218 -0.4543 31 1 1.5721 2.0493 0.4333 32 1 3.1076 1.1628 0.5904 33 1 1.1336 1.1872 -3.0665 34 1 0.4602 2.2634 -1.7662 35 1 2.7672 2.8830 -3.7507 36 1 1.5982 4.0540 -2.9988 37 1 3.1443 6.6171 -2.6297 38 1 -0.3353 -1.7082 0.9367 39 1 -0.6165 -5.6798 -0.2251 40 1 0.1832 -7.1080 -1.0687 41 1 1.4363 -7.8718 -1.8868 42 1 2.9690 -3.5025 -1.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085976846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:43 Heat of formation + Delta-G solvation = 47.876088 kcal Electronic energy + Delta-G solvation = -26192.331323 eV Core-core repulsion = 22368.521411 eV Total energy + Delta-G solvation = -3823.809912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32881 -39.88506 -38.90374 -37.76092 -35.50230 -34.37264 -32.98236 -32.29583 -31.84936 -28.66318 -27.85526 -26.95928 -25.08317 -24.53930 -23.32617 -22.48523 -21.57105 -19.87376 -19.08782 -18.43225 -17.73196 -17.51951 -16.97565 -16.64996 -16.16780 -15.78503 -15.35704 -15.25199 -14.74959 -14.55868 -14.30908 -13.94338 -13.73462 -13.55826 -13.46740 -13.35127 -12.97083 -12.42426 -12.25681 -11.87267 -11.42467 -11.05246 -10.97432 -10.87833 -10.68927 -10.47585 -10.36581 -10.22967 -10.20975 -9.83635 -9.78312 -9.72129 -9.63747 -9.50460 -8.75954 -8.46670 -6.85405 -5.73612 -3.07243 0.02210 0.55016 2.27846 2.69341 2.89278 3.03782 3.41088 3.43591 3.46449 3.47652 3.71629 4.12999 4.22391 4.40402 4.43561 4.48886 4.72876 4.80331 4.99650 5.17141 5.23338 5.40533 5.46673 5.54331 5.57997 5.62379 5.79466 5.93284 5.93780 6.16291 6.24220 6.26888 6.38911 6.53712 6.70073 6.77071 6.78931 7.25351 7.26289 7.37368 7.46746 7.61277 7.73926 8.01378 8.12517 9.07134 9.73719 10.62879 11.42562 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002694 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.920286 B =10392.833616 C =10618.233372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.597 5.597 3 C 0.118 3.882 4 C 0.130 3.870 5 H 0.047 0.953 6 C -0.158 4.158 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.222 4.222 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.556 3.444 18 O -0.523 6.523 19 C -0.181 4.181 20 C 0.141 3.859 21 N -0.488 5.488 22 C 0.150 3.850 23 C -0.201 4.201 24 C 0.571 3.429 25 N -0.849 5.849 26 O -0.529 6.529 27 C 0.039 3.961 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.078 0.922 37 H 0.253 0.747 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.401 0.599 41 H 0.408 0.592 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 -23.109 4.228 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.329 5.329 3 C -0.004 4.004 4 C 0.022 3.978 5 H 0.065 0.935 6 C -0.197 4.197 7 C 0.031 3.969 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.343 3.657 18 O -0.399 6.399 19 C -0.186 4.186 20 C -0.016 4.016 21 N -0.196 5.196 22 C -0.008 4.008 23 C -0.206 4.206 24 C 0.355 3.645 25 N -0.414 5.414 26 O -0.405 6.405 27 C 0.013 3.987 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.201 0.799 39 H 0.179 0.821 40 H 0.230 0.770 41 H 0.240 0.760 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.662 -22.573 4.442 26.261 hybrid contribution 1.125 0.363 0.021 1.182 sum -11.538 -22.210 4.463 25.423 Atomic orbital electron populations 1.22508 0.80114 1.04185 1.01861 1.47712 1.06830 1.06247 1.72088 1.21883 0.97044 0.82130 0.99388 1.22525 0.93889 0.88693 0.92739 0.93514 1.23766 0.97410 0.99442 0.99046 1.22303 0.90738 0.95628 0.88264 1.46061 1.60413 1.04177 1.22131 1.19025 1.22576 0.88002 1.05319 0.90369 1.24768 1.00718 0.96847 0.98031 1.69819 1.46009 1.15892 1.25083 0.86146 0.79644 0.80756 0.79383 1.21658 1.21673 1.20590 1.17956 0.87085 0.83028 0.77667 1.90841 1.13112 1.86838 1.49113 1.21077 0.97011 0.96094 1.04437 1.24101 0.89546 0.95737 0.92192 1.67810 1.36010 0.99256 1.16490 1.23128 0.91097 0.96977 0.89647 1.20854 0.97611 0.95818 1.06364 1.17959 0.84794 0.83017 0.78703 1.43697 1.21137 1.13966 1.62596 1.90883 1.19309 1.84107 1.46208 1.21853 0.99253 0.88827 0.88813 0.91696 0.89753 0.90296 0.89344 0.90266 0.93435 0.90882 0.95930 0.90377 0.93719 0.79879 0.82053 0.76972 0.76004 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.58 59.84 0.51 1.04 16 2 N -0.60 -8.28 2.78 -182.70 -0.51 -8.79 16 3 C 0.12 2.08 5.31 -4.04 -0.02 2.06 16 4 C 0.13 2.68 4.54 -66.87 -0.30 2.38 16 5 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 6 C -0.16 -2.93 7.18 -25.79 -0.19 -3.12 16 7 C 0.16 3.69 7.64 -2.84 -0.02 3.67 16 8 N -0.60 -15.37 3.58 -169.74 -0.61 -15.98 16 9 C -0.22 -6.21 10.51 -15.06 -0.16 -6.36 16 10 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.33 11.32 55.49 0.63 -26.71 16 13 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 C 0.56 8.41 7.43 -12.32 -0.09 8.31 16 18 O -0.52 -10.12 16.42 5.32 0.09 -10.03 16 19 C -0.18 -2.13 5.49 -104.87 -0.58 -2.71 16 20 C 0.14 1.29 8.64 -17.06 -0.15 1.15 16 21 N -0.49 -4.22 10.33 -12.58 -0.13 -4.35 16 22 C 0.15 1.05 10.71 -17.06 -0.18 0.87 16 23 C -0.20 -1.86 5.88 -104.87 -0.62 -2.48 16 24 C 0.57 5.36 8.05 -12.33 -0.10 5.26 16 25 N -0.85 -3.73 8.83 30.53 0.27 -3.46 16 26 O -0.53 -7.42 17.25 5.32 0.09 -7.32 16 27 C 0.04 0.47 9.27 -38.45 -0.36 0.11 16 28 H 0.06 0.45 7.40 -51.93 -0.38 0.07 16 29 H 0.08 0.81 6.42 -51.93 -0.33 0.47 16 30 H 0.08 0.62 4.77 -51.93 -0.25 0.37 16 31 H 0.09 1.53 8.03 -51.93 -0.42 1.12 16 32 H 0.08 1.55 7.53 -51.93 -0.39 1.16 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.24 6.87 -51.93 -0.36 0.89 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 2.02 6.98 -51.93 -0.36 1.65 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.18 1.30 4.68 -52.49 -0.25 1.06 16 39 H 0.16 0.44 6.41 -52.49 -0.34 0.11 16 40 H 0.40 0.46 6.89 -40.82 -0.28 0.17 16 41 H 0.41 1.35 8.93 -40.82 -0.36 0.98 16 42 H 0.16 2.14 7.67 -52.48 -0.40 1.74 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -37.18 349.27 -7.21 -44.39 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.94 Total: -0.17 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -2.34 Total: 9.88 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.35 Total: -59.30 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.18 Total: -17.36 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.18 -7.21 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085976846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.268 kcal (2) G-P(sol) polarization free energy of solvation -37.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds