Wall clock time and date at job start Fri Apr 10 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00144 * 2 1 4 4 C 1.52994 * 109.47368 * 264.93913 * 3 2 1 5 5 H 1.08995 * 112.96423 * 294.03259 * 4 3 2 6 6 C 1.53941 * 113.77198 * 65.71137 * 4 3 2 7 7 C 1.53950 * 86.29245 * 137.90854 * 6 4 3 8 8 N 1.47578 * 113.76980 * 162.35752 * 4 3 2 9 9 C 1.36936 * 134.49762 * 41.06140 * 8 4 3 10 10 H 1.07997 * 119.99517 * 4.68679 * 9 8 4 11 11 C 1.38808 * 120.00253 * 184.68009 * 9 8 4 12 12 N 1.31617 * 120.00321 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99775 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46951 * 90.00393 * 13 11 9 15 15 H 1.48499 * 109.47006 * 210.00255 * 13 11 9 16 16 H 1.48500 * 109.47117 * 330.00292 * 13 11 9 17 17 C 1.34776 * 120.00342 * 180.02562 * 2 1 3 18 18 O 1.21550 * 120.00348 * 183.72565 * 17 2 1 19 19 C 1.47856 * 119.99467 * 3.73092 * 17 2 1 20 20 C 1.39669 * 120.49314 * 329.27985 * 19 17 2 21 21 N 1.31741 * 120.87908 * 180.02562 * 20 19 17 22 22 C 1.31760 * 122.04290 * 359.97438 * 21 20 19 23 23 C 1.39632 * 120.87991 * 359.73916 * 22 21 20 24 24 C 1.47856 * 120.48784 * 180.28197 * 23 22 21 25 25 N 1.34765 * 120.00098 * 0.25335 * 24 23 22 26 26 O 1.21557 * 119.99886 * 180.24930 * 24 23 22 27 27 C 1.39737 * 120.48960 * 149.30863 * 19 17 2 28 28 H 1.08998 * 109.47041 * 273.76100 * 1 2 3 29 29 H 1.08992 * 109.47386 * 33.76123 * 1 2 3 30 30 H 1.09003 * 109.47232 * 153.76663 * 1 2 3 31 31 H 1.09007 * 109.46765 * 24.93816 * 3 2 1 32 32 H 1.08999 * 109.47271 * 144.93229 * 3 2 1 33 33 H 1.09002 * 113.74622 * 252.25411 * 6 4 3 34 34 H 1.09001 * 113.74219 * 23.45521 * 6 4 3 35 35 H 1.09001 * 113.76734 * 90.69635 * 7 6 4 36 36 H 1.08995 * 113.77077 * 221.98250 * 7 6 4 37 37 H 0.97004 * 120.00306 * 179.97438 * 12 11 9 38 38 H 1.07997 * 119.55844 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.55688 * 179.97438 * 22 21 20 40 40 H 0.97007 * 120.00524 * 359.97438 * 25 24 23 41 41 H 0.97005 * 120.00041 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.92118 * 359.95112 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5627 1.6468 -1.4368 5 1 3.2726 0.9556 -1.8910 6 6 1.3447 1.9581 -2.3253 7 6 2.1713 3.1354 -2.8736 8 7 2.9256 3.0674 -1.6041 9 6 3.6633 3.9618 -0.8755 10 1 4.1892 3.6341 0.0090 11 6 3.7354 5.2896 -1.2738 12 7 3.0942 5.6891 -2.3515 13 14 4.7425 6.5094 -0.2801 14 1 6.1348 6.5379 -0.7957 15 1 4.1419 7.8621 -0.4014 16 1 4.7513 6.0978 1.1467 17 6 2.1389 -1.1672 -0.0005 18 8 3.3525 -1.1683 0.0679 19 6 1.4019 -2.4462 -0.0844 20 6 0.1190 -2.5617 0.4554 21 7 -0.5443 -3.6978 0.3854 22 6 -0.0374 -4.7688 -0.1907 23 6 1.2366 -4.7404 -0.7616 24 6 1.7945 -5.9457 -1.4114 25 7 1.0704 -7.0812 -1.4602 26 8 2.9063 -5.9123 -1.9016 27 6 1.9790 -3.5576 -0.7045 28 1 -0.3633 0.0674 1.0254 29 1 -0.3634 0.8543 -0.5711 30 1 -0.3634 -0.9218 -0.4543 31 1 1.5721 2.0493 0.4333 32 1 3.1076 1.1628 0.5904 33 1 1.1336 1.1872 -3.0665 34 1 0.4602 2.2634 -1.7662 35 1 2.7672 2.8830 -3.7507 36 1 1.5982 4.0540 -2.9988 37 1 3.1443 6.6171 -2.6297 38 1 -0.3353 -1.7082 0.9367 39 1 -0.6165 -5.6798 -0.2251 40 1 0.1832 -7.1080 -1.0687 41 1 1.4363 -7.8718 -1.8868 42 1 2.9690 -3.5025 -1.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085976846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:43 Heat of formation + Delta-G solvation = 17.852302 kcal Electronic energy + Delta-G solvation = -26193.633252 eV Core-core repulsion = 22368.521411 eV Total energy + Delta-G solvation = -3825.111841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.17907 -40.91100 -39.89841 -39.32689 -36.72892 -35.05301 -34.26975 -33.78166 -32.80513 -29.90754 -29.86444 -27.96694 -25.84669 -25.63205 -25.25587 -23.82398 -22.43563 -21.12141 -20.62375 -19.26050 -18.72087 -18.48506 -18.21206 -17.64651 -17.32379 -17.07730 -16.65419 -16.22853 -16.10637 -15.91127 -15.48986 -15.26479 -14.88961 -14.63764 -14.41588 -14.25109 -14.13207 -13.88083 -13.81358 -13.36557 -13.01317 -12.78080 -12.54606 -12.32997 -12.29195 -11.88167 -11.78084 -11.57978 -11.38872 -11.22378 -11.16231 -10.84508 -10.80915 -10.62771 -10.32672 -9.74093 -8.91556 -7.89663 -5.24650 -0.69415 -0.29460 1.43676 1.44456 1.46785 1.54750 1.68504 1.90838 2.35769 2.47969 2.65603 3.08414 3.27988 3.29988 3.43955 3.53508 3.60247 3.80819 3.87649 3.93534 4.09287 4.22033 4.25639 4.31285 4.49734 4.61511 4.74385 4.75659 4.78523 4.84610 4.94039 5.00236 5.04675 5.18351 5.23748 5.39144 5.56409 5.70098 5.80118 5.95042 6.26855 6.31696 6.55856 6.92337 6.97561 7.20007 7.60754 8.56543 9.26129 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002694 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.920286 B =10392.833616 C =10618.233372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.591 5.591 3 C 0.135 3.865 4 C 0.128 3.872 5 H 0.022 0.978 6 C -0.121 4.121 7 C 0.145 3.855 8 N -0.628 5.628 9 C -0.232 4.232 10 H 0.077 0.923 11 C -0.064 4.064 12 N -0.951 5.951 13 Si 0.975 3.025 14 H -0.293 1.293 15 H -0.290 1.290 16 H -0.267 1.267 17 C 0.553 3.447 18 O -0.581 6.581 19 C -0.196 4.196 20 C 0.158 3.842 21 N -0.488 5.488 22 C 0.175 3.825 23 C -0.204 4.204 24 C 0.569 3.431 25 N -0.819 5.819 26 O -0.587 6.587 27 C 0.021 3.979 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.006 0.994 36 H 0.054 0.946 37 H 0.249 0.751 38 H 0.209 0.791 39 H 0.213 0.787 40 H 0.421 0.579 41 H 0.417 0.583 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.948 -25.229 5.672 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.322 5.322 3 C 0.011 3.989 4 C 0.021 3.979 5 H 0.040 0.960 6 C -0.159 4.159 7 C 0.020 3.980 8 N -0.355 5.355 9 C -0.360 4.360 10 H 0.095 0.905 11 C -0.257 4.257 12 N -0.600 5.600 13 Si 0.803 3.197 14 H -0.220 1.220 15 H -0.216 1.216 16 H -0.192 1.192 17 C 0.342 3.658 18 O -0.461 6.461 19 C -0.201 4.201 20 C 0.002 3.998 21 N -0.195 5.195 22 C 0.016 3.984 23 C -0.209 4.209 24 C 0.354 3.646 25 N -0.384 5.384 26 O -0.468 6.468 27 C -0.006 4.006 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.226 0.774 39 H 0.229 0.771 40 H 0.254 0.746 41 H 0.250 0.750 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.364 -24.767 5.909 30.267 hybrid contribution 2.199 0.867 -0.457 2.407 sum -14.166 -23.900 5.453 28.312 Atomic orbital electron populations 1.22896 0.76688 1.05456 1.04401 1.47701 1.08722 1.04461 1.71333 1.21398 0.96738 0.84181 0.96561 1.22586 0.94257 0.85892 0.95169 0.96034 1.23518 0.96576 0.97301 0.98469 1.22302 0.91312 0.96820 0.87534 1.46470 1.60247 1.05988 1.22754 1.19343 1.22388 0.88838 1.05422 0.90536 1.25572 1.02233 0.98572 0.99293 1.69997 1.47527 1.15845 1.26621 0.85132 0.77650 0.78285 0.78596 1.21995 1.21571 1.19165 1.18503 0.86605 0.84331 0.76373 1.90807 1.15806 1.87740 1.51772 1.20739 0.98232 0.94211 1.06899 1.24403 0.87942 0.96820 0.90677 1.67996 1.35557 0.99310 1.16683 1.23858 0.89843 0.98100 0.86549 1.20874 0.98382 0.94767 1.06895 1.18059 0.84295 0.84056 0.78214 1.43466 1.21378 1.12609 1.60975 1.90866 1.21914 1.85067 1.48942 1.21737 0.98656 0.90492 0.89720 0.88354 0.89310 0.88302 0.88432 0.93065 0.90531 0.88358 0.97587 0.92757 0.94230 0.77443 0.77064 0.74610 0.74955 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 8.58 127.77 1.10 1.79 16 2 N -0.59 -15.77 2.78 -850.21 -2.37 -18.13 16 3 C 0.14 4.79 5.31 86.38 0.46 5.25 16 4 C 0.13 5.39 4.54 45.09 0.20 5.60 16 5 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 6 C -0.12 -4.32 7.18 31.25 0.22 -4.10 16 7 C 0.15 7.06 7.64 86.44 0.66 7.72 16 8 N -0.63 -32.94 3.58 -690.93 -2.48 -35.42 16 9 C -0.23 -13.29 10.51 84.03 0.88 -12.40 16 10 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 11 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 12 N -0.95 -57.94 11.32 21.65 0.25 -57.69 16 13 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 14 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.55 16.95 7.43 86.79 0.65 17.60 16 18 O -0.58 -24.02 16.42 -3.87 -0.06 -24.09 16 19 C -0.20 -4.44 5.49 -20.02 -0.11 -4.55 16 20 C 0.16 2.35 8.64 85.05 0.73 3.09 16 21 N -0.49 -6.21 10.33 -193.70 -2.00 -8.21 16 22 C 0.17 1.69 10.71 85.04 0.91 2.60 16 23 C -0.20 -3.42 5.88 -20.03 -0.12 -3.54 16 24 C 0.57 9.99 8.05 86.79 0.70 10.69 16 25 N -0.82 -4.67 8.83 -175.60 -1.55 -6.22 16 26 O -0.59 -16.99 17.25 -3.89 -0.07 -17.06 16 27 C 0.02 0.51 9.27 23.00 0.21 0.72 16 28 H 0.10 0.89 7.40 -2.39 -0.02 0.87 16 29 H 0.09 1.32 6.42 -2.39 -0.02 1.30 16 30 H 0.10 1.12 4.77 -2.39 -0.01 1.11 16 31 H 0.10 3.28 8.03 -2.38 -0.02 3.26 16 32 H 0.05 2.09 7.53 -2.39 -0.02 2.08 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.10 3.06 6.87 -2.39 -0.02 3.04 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.05 2.88 6.98 -2.39 -0.02 2.87 16 37 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 38 H 0.21 1.97 4.68 -2.91 -0.01 1.95 16 39 H 0.21 -0.22 6.41 -2.91 -0.02 -0.24 16 40 H 0.42 -1.06 6.89 -92.70 -0.64 -1.70 16 41 H 0.42 1.62 8.93 -92.70 -0.83 0.79 16 42 H 0.13 3.84 7.67 -2.91 -0.02 3.82 16 Total: -1.00 -87.97 349.27 0.35 -87.62 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -0.37 Total: 3.25 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: 6.97 Total: 27.23 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -8.15 Total: -125.67 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.13 Total: -41.15 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -87.97 0.35 -87.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085976846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.473 kcal (2) G-P(sol) polarization free energy of solvation -87.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds