Wall clock time and date at job start Fri Apr 10 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00076 * 2 1 4 4 C 1.53001 * 109.46990 * 80.60909 * 3 2 1 5 5 H 1.08994 * 113.04181 * 310.54022 * 4 3 2 6 6 C 1.53946 * 113.76576 * 178.79187 * 4 3 2 7 7 C 1.53956 * 86.28725 * 222.09261 * 6 4 3 8 8 N 1.47575 * 86.23828 * 23.55301 * 7 6 4 9 9 C 1.36944 * 134.49116 * 155.43274 * 8 7 6 10 10 H 1.07994 * 119.99856 * 171.89238 * 9 8 7 11 11 C 1.38810 * 119.99688 * 351.88336 * 9 8 7 12 12 N 1.31617 * 120.00086 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99752 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47165 * 90.00345 * 13 11 9 15 15 H 1.48510 * 109.47155 * 210.00359 * 13 11 9 16 16 H 1.48498 * 109.47326 * 330.00365 * 13 11 9 17 17 C 1.34772 * 120.00028 * 180.02562 * 2 1 3 18 18 O 1.21557 * 120.00122 * 184.58903 * 17 2 1 19 19 C 1.47852 * 119.99972 * 4.58533 * 17 2 1 20 20 C 1.39664 * 120.49164 * 27.95908 * 19 17 2 21 21 N 1.31733 * 120.88109 * 179.70088 * 20 19 17 22 22 C 1.31764 * 122.04167 * 0.58946 * 21 20 19 23 23 C 1.39630 * 120.88173 * 359.70063 * 22 21 20 24 24 C 1.47848 * 120.49229 * 180.02562 * 23 22 21 25 25 N 1.34776 * 120.00082 * 359.97438 * 24 23 22 26 26 O 1.21551 * 120.00148 * 179.97438 * 24 23 22 27 27 C 1.39737 * 120.48957 * 208.23705 * 19 17 2 28 28 H 1.08995 * 109.47534 * 83.96777 * 1 2 3 29 29 H 1.09001 * 109.47072 * 203.97064 * 1 2 3 30 30 H 1.09006 * 109.46806 * 323.97012 * 1 2 3 31 31 H 1.09003 * 109.46916 * 320.60550 * 3 2 1 32 32 H 1.09005 * 109.47154 * 200.60871 * 3 2 1 33 33 H 1.08993 * 113.74265 * 107.75153 * 6 4 3 34 34 H 1.08996 * 113.74640 * 336.43475 * 6 4 3 35 35 H 1.09000 * 113.76671 * 137.91157 * 7 6 4 36 36 H 1.09000 * 113.76587 * 269.19318 * 7 6 4 37 37 H 0.97003 * 119.99801 * 179.97438 * 12 11 9 38 38 H 1.08003 * 119.55907 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.55876 * 179.67743 * 22 21 20 40 40 H 0.97000 * 119.99866 * 359.97438 * 25 24 23 41 41 H 0.97002 * 120.00543 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.92270 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2486 1.8281 1.4232 5 1 1.2736 1.8455 1.9100 6 6 3.0251 3.1521 1.5419 7 6 3.6317 2.5649 2.8294 8 7 3.3182 1.2411 2.2576 9 6 3.8182 -0.0220 2.4308 10 1 3.3204 -0.8666 1.9780 11 6 4.9649 -0.2166 3.1884 12 7 5.5714 0.8128 3.7406 13 14 5.6474 -1.9394 3.4242 14 1 6.6134 -2.2421 2.3377 15 1 6.3365 -2.0235 4.7370 16 1 4.5348 -2.9222 3.3853 17 6 2.1388 -1.1672 -0.0005 18 8 3.3515 -1.1689 0.0837 19 6 1.4031 -2.4455 -0.1035 20 6 0.1704 -2.5030 -0.7575 21 7 -0.4889 -3.6390 -0.8588 22 6 -0.0298 -4.7620 -0.3446 23 6 1.1917 -4.7941 0.3311 24 6 1.6989 -6.0591 0.9042 25 7 0.9808 -7.1924 0.7769 26 8 2.7637 -6.0770 1.4903 27 6 1.9281 -3.6128 0.4572 28 1 -0.3634 0.1080 -1.0219 29 1 -0.3633 -0.9390 0.4175 30 1 -0.3633 0.8311 0.6045 31 1 1.6913 1.9805 -0.6522 32 1 3.2122 1.1024 -0.3617 33 1 2.3888 4.0202 1.7130 34 1 3.7526 3.3072 0.7452 35 1 4.6996 2.7548 2.9381 36 1 3.0640 2.8004 3.7295 37 1 6.3726 0.6767 4.2703 38 1 -0.2458 -1.6051 -1.1898 39 1 -0.6062 -5.6696 -0.4468 40 1 0.1309 -7.1781 0.3095 41 1 1.3133 -8.0223 1.1532 42 1 2.8767 -3.6026 0.9733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085976847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:45 Heat of formation + Delta-G solvation = 54.960662 kcal Electronic energy + Delta-G solvation = -27308.328634 eV Core-core repulsion = 23484.825933 eV Total energy + Delta-G solvation = -3823.502701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04550 -39.61664 -38.67289 -37.51453 -35.27609 -34.14574 -32.69370 -32.04482 -31.64677 -28.45600 -27.67795 -26.72638 -24.88307 -24.28350 -23.17103 -22.30418 -21.33775 -19.54809 -18.97914 -18.24532 -17.46928 -17.22537 -16.76552 -16.71108 -15.91461 -15.64498 -15.07718 -14.81003 -14.62724 -14.30241 -14.04934 -13.70914 -13.55438 -13.41116 -13.25046 -13.09945 -12.71922 -12.59651 -11.73148 -11.50972 -11.33238 -10.97461 -10.77666 -10.71709 -10.55152 -10.39674 -10.09427 -9.99961 -9.95465 -9.86864 -9.58273 -9.45124 -9.39452 -8.97392 -8.53660 -8.17768 -6.64468 -5.52773 -2.82750 0.26753 0.82937 2.53685 3.00599 3.19645 3.30301 3.59797 3.64668 3.69276 3.75608 3.93458 4.40473 4.46612 4.63529 4.68714 4.72126 4.99494 5.01038 5.20588 5.24244 5.31662 5.59121 5.64632 5.71188 5.72960 5.86393 5.92669 5.97414 6.02534 6.21796 6.36034 6.44831 6.48688 6.72652 6.76317 6.91171 6.98997 7.38908 7.48095 7.55236 7.69485 7.83267 7.97733 8.24515 8.57605 9.31139 9.96581 10.80023 11.63373 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.005363 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.282308 B = 5219.872633 C = 7179.996610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.118 3.882 4 C 0.123 3.877 5 H 0.042 0.958 6 C -0.157 4.157 7 C 0.149 3.851 8 N -0.596 5.596 9 C -0.192 4.192 10 H 0.092 0.908 11 C -0.013 4.013 12 N -0.928 5.928 13 Si 0.903 3.097 14 H -0.288 1.288 15 H -0.296 1.296 16 H -0.281 1.281 17 C 0.541 3.459 18 O -0.473 6.473 19 C -0.175 4.175 20 C 0.137 3.863 21 N -0.490 5.490 22 C 0.144 3.856 23 C -0.199 4.199 24 C 0.568 3.432 25 N -0.851 5.851 26 O -0.524 6.524 27 C 0.038 3.962 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.020 0.980 37 H 0.248 0.752 38 H 0.179 0.821 39 H 0.160 0.840 40 H 0.400 0.600 41 H 0.407 0.593 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.035 -7.248 -10.985 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C -0.005 4.005 4 C 0.014 3.986 5 H 0.060 0.940 6 C -0.196 4.196 7 C 0.023 3.977 8 N -0.322 5.322 9 C -0.319 4.319 10 H 0.109 0.891 11 C -0.208 4.208 12 N -0.577 5.577 13 Si 0.734 3.266 14 H -0.216 1.216 15 H -0.222 1.222 16 H -0.207 1.207 17 C 0.327 3.673 18 O -0.345 6.345 19 C -0.180 4.180 20 C -0.019 4.019 21 N -0.198 5.198 22 C -0.015 4.015 23 C -0.205 4.205 24 C 0.353 3.647 25 N -0.416 5.416 26 O -0.399 6.399 27 C 0.011 3.989 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.037 0.963 37 H 0.058 0.942 38 H 0.196 0.804 39 H 0.177 0.823 40 H 0.229 0.771 41 H 0.239 0.761 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.200 -7.323 -10.895 20.851 hybrid contribution 0.683 -1.339 0.745 1.678 sum -15.517 -8.662 -10.150 20.465 Atomic orbital electron populations 1.22186 0.80853 1.03481 1.00959 1.47502 1.06068 1.06236 1.74120 1.21949 0.97940 0.82576 0.98085 1.22702 0.93217 0.91654 0.90980 0.94034 1.23767 0.99379 0.95105 1.01344 1.22317 1.00509 0.83684 0.91147 1.46057 1.35975 1.04389 1.45735 1.19399 1.04932 0.82908 1.24679 0.89065 1.24714 0.97805 0.96978 1.01339 1.69818 1.21019 1.28112 1.38715 0.86235 0.79331 0.84320 0.76693 1.21552 1.22238 1.20659 1.17842 0.87454 0.82790 0.79254 1.90970 1.12702 1.86192 1.44674 1.21176 0.97454 0.95914 1.03456 1.23907 0.89432 0.96544 0.92061 1.67747 1.34327 0.98586 1.19155 1.23033 0.91424 0.96708 0.90327 1.20845 0.98547 0.95086 1.05992 1.18008 0.84068 0.83610 0.79058 1.43686 1.25441 1.11159 1.61308 1.90911 1.21825 1.85763 1.41440 1.21955 0.98436 0.89073 0.89452 0.92360 0.90833 0.90810 0.91400 0.88635 0.93231 0.90682 0.90120 0.96262 0.94177 0.80429 0.82255 0.77105 0.76145 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 8.74 59.84 0.52 1.25 16 2 N -0.61 -9.57 2.88 -182.69 -0.53 -10.10 16 3 C 0.12 2.00 5.40 -4.04 -0.02 1.97 16 4 C 0.12 2.42 4.51 -66.74 -0.30 2.12 16 5 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 6 C -0.16 -2.93 7.86 -25.79 -0.20 -3.14 16 7 C 0.15 3.58 7.72 -2.97 -0.02 3.56 16 8 N -0.60 -15.45 3.58 -169.74 -0.61 -16.06 16 9 C -0.19 -5.60 9.23 -15.06 -0.14 -5.74 16 10 H 0.09 2.65 4.36 -52.49 -0.23 2.42 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -29.17 11.27 55.49 0.63 -28.55 16 13 Si 0.90 25.06 29.55 -169.99 -5.02 20.04 16 14 H -0.29 -8.10 7.11 56.52 0.40 -7.70 16 15 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 16 H -0.28 -7.73 7.11 56.52 0.40 -7.33 16 17 C 0.54 10.08 6.36 -12.33 -0.08 10.00 16 18 O -0.47 -11.19 12.92 5.32 0.07 -11.12 16 19 C -0.17 -2.70 5.42 -104.87 -0.57 -3.27 16 20 C 0.14 1.62 8.69 -17.06 -0.15 1.47 16 21 N -0.49 -5.45 10.33 -12.58 -0.13 -5.58 16 22 C 0.14 1.42 10.71 -17.06 -0.18 1.24 16 23 C -0.20 -2.59 5.88 -104.87 -0.62 -3.21 16 24 C 0.57 7.46 8.05 -12.33 -0.10 7.36 16 25 N -0.85 -6.28 8.83 30.53 0.27 -6.01 16 26 O -0.52 -9.65 17.25 5.32 0.09 -9.56 16 27 C 0.04 0.62 9.26 -38.45 -0.36 0.26 16 28 H 0.06 0.44 7.15 -51.93 -0.37 0.07 16 29 H 0.07 0.77 5.22 -51.93 -0.27 0.50 16 30 H 0.07 0.74 7.84 -51.93 -0.41 0.33 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.95 7.22 -51.93 -0.37 1.57 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 35 H 0.08 2.18 6.82 -51.93 -0.35 1.83 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 38 H 0.18 1.63 4.76 -52.48 -0.25 1.38 16 39 H 0.16 0.85 6.41 -52.49 -0.34 0.51 16 40 H 0.40 1.51 6.88 -40.82 -0.28 1.23 16 41 H 0.41 2.50 8.93 -40.82 -0.36 2.14 16 42 H 0.16 3.15 7.63 -52.49 -0.40 2.75 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -39.67 343.18 -7.24 -46.91 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.87 Total: 1.47 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: -2.31 Total: 13.38 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -0.37 Total: -66.29 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.16 Total: -20.68 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.02 Total: 20.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -39.67 -7.24 -46.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085976847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.873 kcal (2) G-P(sol) polarization free energy of solvation -39.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds