Wall clock time and date at job start Fri Apr 10 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 120.00076 * 2 1 4 4 C 1.53001 * 109.46990 * 80.60909 * 3 2 1 5 5 H 1.08994 * 113.04181 * 310.54022 * 4 3 2 6 6 C 1.53946 * 113.76576 * 178.79187 * 4 3 2 7 7 C 1.53956 * 86.28725 * 222.09261 * 6 4 3 8 8 N 1.47575 * 86.23828 * 23.55301 * 7 6 4 9 9 C 1.36944 * 134.49116 * 155.43274 * 8 7 6 10 10 H 1.07994 * 119.99856 * 171.89238 * 9 8 7 11 11 C 1.38810 * 119.99688 * 351.88336 * 9 8 7 12 12 N 1.31617 * 120.00086 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99752 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47165 * 90.00345 * 13 11 9 15 15 H 1.48510 * 109.47155 * 210.00359 * 13 11 9 16 16 H 1.48498 * 109.47326 * 330.00365 * 13 11 9 17 17 C 1.34772 * 120.00028 * 180.02562 * 2 1 3 18 18 O 1.21557 * 120.00122 * 184.58903 * 17 2 1 19 19 C 1.47852 * 119.99972 * 4.58533 * 17 2 1 20 20 C 1.39664 * 120.49164 * 27.95908 * 19 17 2 21 21 N 1.31733 * 120.88109 * 179.70088 * 20 19 17 22 22 C 1.31764 * 122.04167 * 0.58946 * 21 20 19 23 23 C 1.39630 * 120.88173 * 359.70063 * 22 21 20 24 24 C 1.47848 * 120.49229 * 180.02562 * 23 22 21 25 25 N 1.34776 * 120.00082 * 359.97438 * 24 23 22 26 26 O 1.21551 * 120.00148 * 179.97438 * 24 23 22 27 27 C 1.39737 * 120.48957 * 208.23705 * 19 17 2 28 28 H 1.08995 * 109.47534 * 83.96777 * 1 2 3 29 29 H 1.09001 * 109.47072 * 203.97064 * 1 2 3 30 30 H 1.09006 * 109.46806 * 323.97012 * 1 2 3 31 31 H 1.09003 * 109.46916 * 320.60550 * 3 2 1 32 32 H 1.09005 * 109.47154 * 200.60871 * 3 2 1 33 33 H 1.08993 * 113.74265 * 107.75153 * 6 4 3 34 34 H 1.08996 * 113.74640 * 336.43475 * 6 4 3 35 35 H 1.09000 * 113.76671 * 137.91157 * 7 6 4 36 36 H 1.09000 * 113.76587 * 269.19318 * 7 6 4 37 37 H 0.97003 * 119.99801 * 179.97438 * 12 11 9 38 38 H 1.08003 * 119.55907 * 359.97438 * 20 19 17 39 39 H 1.08001 * 119.55876 * 179.67743 * 22 21 20 40 40 H 0.97000 * 119.99866 * 359.97438 * 25 24 23 41 41 H 0.97002 * 120.00543 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.92270 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2486 1.8281 1.4232 5 1 1.2736 1.8455 1.9100 6 6 3.0251 3.1521 1.5419 7 6 3.6317 2.5649 2.8294 8 7 3.3182 1.2411 2.2576 9 6 3.8182 -0.0220 2.4308 10 1 3.3204 -0.8666 1.9780 11 6 4.9649 -0.2166 3.1884 12 7 5.5714 0.8128 3.7406 13 14 5.6474 -1.9394 3.4242 14 1 6.6134 -2.2421 2.3377 15 1 6.3365 -2.0235 4.7370 16 1 4.5348 -2.9222 3.3853 17 6 2.1388 -1.1672 -0.0005 18 8 3.3515 -1.1689 0.0837 19 6 1.4031 -2.4455 -0.1035 20 6 0.1704 -2.5030 -0.7575 21 7 -0.4889 -3.6390 -0.8588 22 6 -0.0298 -4.7620 -0.3446 23 6 1.1917 -4.7941 0.3311 24 6 1.6989 -6.0591 0.9042 25 7 0.9808 -7.1924 0.7769 26 8 2.7637 -6.0770 1.4903 27 6 1.9281 -3.6128 0.4572 28 1 -0.3634 0.1080 -1.0219 29 1 -0.3633 -0.9390 0.4175 30 1 -0.3633 0.8311 0.6045 31 1 1.6913 1.9805 -0.6522 32 1 3.2122 1.1024 -0.3617 33 1 2.3888 4.0202 1.7130 34 1 3.7526 3.3072 0.7452 35 1 4.6996 2.7548 2.9381 36 1 3.0640 2.8004 3.7295 37 1 6.3726 0.6767 4.2703 38 1 -0.2458 -1.6051 -1.1898 39 1 -0.6062 -5.6696 -0.4468 40 1 0.1309 -7.1781 0.3095 41 1 1.3133 -8.0223 1.1532 42 1 2.8767 -3.6026 0.9733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085976847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:45 Heat of formation + Delta-G solvation = 20.953226 kcal Electronic energy + Delta-G solvation = -27309.803307 eV Core-core repulsion = 23484.825933 eV Total energy + Delta-G solvation = -3824.977374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.14052 -40.86970 -39.89402 -39.15192 -36.63895 -35.11794 -34.15885 -33.78461 -32.76954 -29.93304 -29.56867 -27.86370 -25.89602 -25.52763 -25.21891 -23.71755 -22.44208 -20.83160 -20.69297 -19.25200 -18.78538 -18.47504 -18.24497 -17.74265 -17.16677 -17.03909 -16.60855 -16.17346 -15.98489 -15.76632 -15.51573 -15.29023 -14.91405 -14.63339 -14.44150 -14.35735 -14.19875 -13.78659 -13.40189 -13.05039 -12.98935 -12.71488 -12.63538 -12.39462 -12.34267 -11.89604 -11.77458 -11.44125 -11.32100 -11.20523 -11.06684 -10.87545 -10.75775 -10.58032 -10.27820 -9.55815 -8.72651 -7.82401 -5.09654 -0.70652 -0.32339 1.28705 1.33063 1.40689 1.49061 1.80295 2.05848 2.31655 2.46754 2.66676 3.09014 3.30872 3.40284 3.47864 3.51977 3.57569 3.83152 3.90095 4.00592 4.15116 4.29150 4.35184 4.42573 4.53723 4.68408 4.72105 4.78508 4.81433 4.91883 4.96587 5.10220 5.17313 5.20521 5.44561 5.59897 5.74078 5.74309 5.83714 6.08714 6.26145 6.40952 6.51880 7.06416 7.15115 7.23630 7.74251 8.65632 9.34249 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.005363 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.282308 B = 5219.872633 C = 7179.996610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.602 5.602 3 C 0.122 3.878 4 C 0.125 3.875 5 H 0.064 0.936 6 C -0.125 4.125 7 C 0.135 3.865 8 N -0.630 5.630 9 C -0.168 4.168 10 H 0.089 0.911 11 C -0.077 4.077 12 N -0.959 5.959 13 Si 0.943 3.057 14 H -0.301 1.301 15 H -0.292 1.292 16 H -0.287 1.287 17 C 0.535 3.465 18 O -0.544 6.544 19 C -0.195 4.195 20 C 0.165 3.835 21 N -0.484 5.484 22 C 0.175 3.825 23 C -0.206 4.206 24 C 0.565 3.435 25 N -0.815 5.815 26 O -0.592 6.592 27 C 0.009 3.991 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.017 0.983 37 H 0.239 0.761 38 H 0.213 0.787 39 H 0.217 0.783 40 H 0.422 0.578 41 H 0.417 0.583 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.651 -7.390 -13.682 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.334 5.334 3 C -0.001 4.001 4 C 0.018 3.982 5 H 0.082 0.918 6 C -0.163 4.163 7 C 0.009 3.991 8 N -0.356 5.356 9 C -0.298 4.298 10 H 0.106 0.894 11 C -0.268 4.268 12 N -0.612 5.612 13 Si 0.775 3.225 14 H -0.230 1.230 15 H -0.219 1.219 16 H -0.214 1.214 17 C 0.323 3.677 18 O -0.422 6.422 19 C -0.200 4.200 20 C 0.008 3.992 21 N -0.191 5.191 22 C 0.017 3.983 23 C -0.211 4.211 24 C 0.350 3.650 25 N -0.381 5.381 26 O -0.472 6.472 27 C -0.019 4.019 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.048 0.952 38 H 0.229 0.771 39 H 0.233 0.767 40 H 0.255 0.745 41 H 0.250 0.750 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.973 -7.487 -13.644 26.926 hybrid contribution 2.159 -1.361 1.444 2.932 sum -19.814 -8.848 -12.200 24.894 Atomic orbital electron populations 1.22602 0.77103 1.04400 1.04260 1.47663 1.08371 1.04913 1.72460 1.21818 0.97183 0.84130 0.96948 1.22998 0.92414 0.91190 0.91548 0.91826 1.23490 0.99056 0.96185 0.97610 1.22341 0.98663 0.84144 0.93906 1.46469 1.38080 1.03717 1.47298 1.19632 1.03731 0.84711 1.21677 0.89395 1.25199 0.99397 0.98694 1.03514 1.69950 1.21660 1.28682 1.40888 0.85580 0.78362 0.82396 0.76114 1.22956 1.21864 1.21362 1.18449 0.86993 0.84543 0.77724 1.90931 1.15741 1.87282 1.48254 1.20968 0.99240 0.93936 1.05883 1.24328 0.87176 0.98054 0.89640 1.67974 1.33615 0.98556 1.18966 1.23828 0.89547 0.98234 0.86700 1.20884 0.99561 0.93753 1.06949 1.18157 0.83542 0.84871 0.78424 1.43395 1.25346 1.09750 1.59608 1.90890 1.24907 1.86741 1.44699 1.21724 0.97547 0.91666 0.90921 0.87730 0.90603 0.89197 0.85715 0.92754 0.88455 0.90547 0.94092 0.96499 0.95189 0.77079 0.76694 0.74455 0.74954 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 8.74 127.77 1.12 2.04 16 2 N -0.60 -17.66 2.88 -850.18 -2.45 -20.11 16 3 C 0.12 3.86 5.40 86.38 0.47 4.33 16 4 C 0.12 4.63 4.51 45.05 0.20 4.83 16 5 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 6 C -0.12 -4.36 7.86 31.25 0.25 -4.11 16 7 C 0.13 6.61 7.72 86.49 0.67 7.27 16 8 N -0.63 -33.30 3.58 -690.93 -2.47 -35.77 16 9 C -0.17 -10.30 9.23 84.03 0.78 -9.53 16 10 H 0.09 5.42 4.36 -2.91 -0.01 5.41 16 11 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 12 N -0.96 -64.00 11.27 21.65 0.24 -63.75 16 13 Si 0.94 55.51 29.55 68.60 2.03 57.53 16 14 H -0.30 -18.05 7.11 99.48 0.71 -17.34 16 15 H -0.29 -16.74 7.11 99.48 0.71 -16.03 16 16 H -0.29 -16.92 7.11 99.48 0.71 -16.21 16 17 C 0.54 20.25 6.36 86.79 0.55 20.80 16 18 O -0.54 -27.56 12.92 -3.90 -0.05 -27.61 16 19 C -0.19 -5.96 5.42 -20.03 -0.11 -6.07 16 20 C 0.16 3.26 8.69 85.05 0.74 4.00 16 21 N -0.48 -8.33 10.33 -193.70 -2.00 -10.33 16 22 C 0.18 2.68 10.71 85.04 0.91 3.59 16 23 C -0.21 -5.16 5.88 -20.03 -0.12 -5.28 16 24 C 0.57 14.65 8.05 86.79 0.70 15.35 16 25 N -0.82 -9.74 8.83 -175.60 -1.55 -11.29 16 26 O -0.59 -23.17 17.25 -3.87 -0.07 -23.23 16 27 C 0.01 0.30 9.26 23.00 0.21 0.52 16 28 H 0.10 0.82 7.15 -2.39 -0.02 0.80 16 29 H 0.08 1.23 5.22 -2.39 -0.01 1.22 16 30 H 0.09 1.25 7.84 -2.38 -0.02 1.23 16 31 H 0.13 2.56 8.14 -2.39 -0.02 2.55 16 32 H 0.05 2.22 7.22 -2.38 -0.02 2.20 16 33 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 35 H 0.04 2.32 6.82 -2.39 -0.02 2.31 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.24 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.21 2.64 4.76 -2.91 -0.01 2.63 16 39 H 0.22 0.78 6.41 -2.91 -0.02 0.76 16 40 H 0.42 1.12 6.88 -92.71 -0.64 0.48 16 41 H 0.42 4.10 8.93 -92.71 -0.83 3.27 16 42 H 0.11 4.80 7.63 -2.91 -0.02 4.78 16 Total: -1.00 -100.39 343.18 0.15 -100.25 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -0.36 Total: 1.13 kcal Atomic # 6 Polarization: 26.36 SS G_CDS: 6.83 Total: 33.18 kcal Atomic # 7 Polarization: -133.03 SS G_CDS: -8.23 Total: -141.26 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.12 Total: -50.84 kcal Atomic # 14 Polarization: 55.51 SS G_CDS: 2.03 Total: 57.53 kcal Total: -100.39 0.15 -100.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085976847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.202 kcal (2) G-P(sol) polarization free energy of solvation -100.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds