Wall clock time and date at job start Fri Apr 10 2020 18:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 119.99873 * 2 1 4 4 C 1.52994 * 109.47056 * 264.23713 * 3 2 1 5 5 H 1.08995 * 112.96345 * 310.94927 * 4 3 2 6 6 C 1.53946 * 113.76673 * 179.27505 * 4 3 2 7 7 C 1.53946 * 86.28938 * 222.09029 * 6 4 3 8 8 N 1.47581 * 113.77092 * 82.63223 * 4 3 2 9 9 C 1.36934 * 134.49483 * 318.92838 * 8 4 3 10 10 H 1.08003 * 119.99450 * 2.95078 * 9 8 4 11 11 C 1.38808 * 120.00000 * 182.94807 * 9 8 4 12 12 N 1.31617 * 120.00281 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99667 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47488 * 60.00398 * 13 11 9 15 15 H 1.48506 * 109.47252 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47485 * 300.00009 * 13 11 9 17 17 C 1.34775 * 120.00143 * 179.97438 * 2 1 3 18 18 O 1.21516 * 119.99554 * 185.08208 * 17 2 1 19 19 C 1.48225 * 120.00190 * 5.08260 * 17 2 1 20 20 C 1.39626 * 119.65480 * 174.77756 * 19 17 2 21 21 C 1.38540 * 119.24688 * 180.27300 * 20 19 17 22 22 C 1.38589 * 118.55267 * 359.49264 * 21 20 19 23 23 C 1.39585 * 119.24496 * 0.53277 * 22 21 20 24 24 C 1.48225 * 119.65324 * 179.72795 * 23 22 21 25 25 N 1.34781 * 119.99637 * 179.97438 * 24 23 22 26 26 O 1.21506 * 119.99832 * 359.97438 * 24 23 22 27 27 N 1.32336 * 119.65410 * 354.80637 * 19 17 2 28 28 H 1.09001 * 109.47271 * 237.02557 * 1 2 3 29 29 H 1.08992 * 109.47646 * 357.03570 * 1 2 3 30 30 H 1.09009 * 109.46880 * 117.03396 * 1 2 3 31 31 H 1.09007 * 109.46943 * 24.23769 * 3 2 1 32 32 H 1.08997 * 109.46990 * 144.23208 * 3 2 1 33 33 H 1.09001 * 113.74627 * 336.43724 * 6 4 3 34 34 H 1.09010 * 113.74162 * 107.64048 * 6 4 3 35 35 H 1.08999 * 113.76896 * 137.91366 * 7 6 4 36 36 H 1.09007 * 113.76626 * 269.19430 * 7 6 4 37 37 H 0.97006 * 120.00183 * 179.97438 * 12 11 9 38 38 H 1.08002 * 120.37595 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.72536 * 179.74952 * 21 20 19 40 40 H 1.07992 * 120.37641 * 180.26099 * 22 21 20 41 41 H 0.96993 * 120.00249 * 359.97438 * 25 24 23 42 42 H 0.97002 * 119.99460 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5779 1.6380 -1.4352 5 1 3.0457 0.8155 -1.9761 6 6 3.3400 2.9705 -1.5517 7 6 2.4589 3.2517 -2.7824 8 7 1.4950 2.3036 -2.1851 9 6 0.1421 2.1172 -2.2856 10 1 -0.3441 1.3585 -1.6903 11 6 -0.6043 2.9034 -3.1525 12 7 -0.0116 3.8278 -3.8783 13 14 -2.4499 2.6496 -3.2890 14 1 -3.0804 2.8785 -1.9642 15 1 -3.0097 3.6075 -4.2762 16 1 -2.7269 1.2608 -3.7357 17 6 2.1389 -1.1672 0.0005 18 8 3.3505 -1.1691 0.0937 19 6 1.4022 -2.4484 -0.1126 20 6 2.1118 -3.6460 -0.2216 21 6 1.4147 -4.8381 -0.3326 22 6 0.0294 -4.7990 -0.3207 23 6 -0.6171 -3.5669 -0.2094 24 6 -2.0984 -3.5139 -0.2018 25 7 -2.7297 -2.3280 -0.0941 26 8 -2.7434 -4.5397 -0.2928 27 7 0.0789 -2.4452 -0.1099 28 1 -0.3634 -0.5593 0.8621 29 1 -0.3634 1.0262 0.0531 30 1 -0.3633 -0.4671 -0.9155 31 1 1.5675 2.0520 0.4219 32 1 3.1012 1.1665 0.6007 33 1 3.1624 3.6520 -0.7198 34 1 4.3982 2.8519 -1.7853 35 1 2.0930 4.2770 -2.8356 36 1 2.8917 2.9053 -3.7210 37 1 -0.5332 4.3770 -4.4844 38 1 3.1918 -3.6427 -0.2233 39 1 1.9393 -5.7778 -0.4222 40 1 -0.5434 -5.7109 -0.4012 41 1 -2.2148 -1.5093 -0.0211 42 1 -3.6991 -2.2934 -0.0895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085993436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:52 Heat of formation + Delta-G solvation = 19.899949 kcal Electronic energy + Delta-G solvation = -27246.190165 eV Core-core repulsion = 23421.167117 eV Total energy + Delta-G solvation = -3825.023048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.08829 -40.81049 -39.82592 -39.16849 -36.55807 -34.98270 -34.23513 -33.58095 -32.66840 -30.21282 -29.52202 -27.70782 -25.99507 -25.65309 -25.21006 -23.82848 -22.18807 -21.06766 -20.76391 -19.02329 -18.78400 -18.47130 -17.96782 -17.30328 -17.12279 -16.86019 -16.75538 -16.27907 -16.11942 -15.81828 -15.49704 -15.31947 -14.81410 -14.68785 -14.42051 -14.27655 -13.91685 -13.53535 -13.19301 -13.09879 -13.05104 -12.87812 -12.65591 -12.45480 -12.29185 -11.86751 -11.78492 -11.46012 -11.23584 -11.19242 -11.04784 -10.82234 -10.76517 -10.48846 -10.40102 -9.60501 -8.82390 -7.80539 -5.11941 -0.63916 -0.20307 1.35213 1.46662 1.50573 1.55418 1.82620 1.95777 2.23905 2.52231 2.77074 2.87361 3.36505 3.42732 3.48477 3.78574 3.85098 3.90822 3.99631 4.23912 4.29541 4.34056 4.39873 4.45958 4.60501 4.71018 4.76878 4.89439 4.92389 4.95967 5.03044 5.03643 5.09390 5.36003 5.38534 5.50560 5.65894 5.70864 5.74825 6.00498 6.11070 6.34293 6.44285 7.00024 7.01956 7.11455 7.72548 8.68788 9.37804 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.005200 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.405026 B = 5383.518889 C = 7317.614933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.584 5.584 3 C 0.124 3.876 4 C 0.129 3.871 5 H 0.027 0.973 6 C -0.131 4.131 7 C 0.152 3.848 8 N -0.623 5.623 9 C -0.221 4.221 10 H 0.110 0.890 11 C -0.076 4.076 12 N -0.960 5.960 13 Si 0.962 3.038 14 H -0.263 1.263 15 H -0.307 1.307 16 H -0.281 1.281 17 C 0.561 3.439 18 O -0.563 6.563 19 C 0.062 3.938 20 C -0.087 4.087 21 C -0.068 4.068 22 C -0.086 4.086 23 C 0.049 3.951 24 C 0.580 3.420 25 N -0.823 5.823 26 O -0.567 6.567 27 N -0.430 5.430 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.006 0.994 37 H 0.242 0.758 38 H 0.163 0.837 39 H 0.194 0.806 40 H 0.168 0.832 41 H 0.415 0.585 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -14.595 11.436 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.313 5.313 3 C 0.001 3.999 4 C 0.022 3.978 5 H 0.045 0.955 6 C -0.169 4.169 7 C 0.027 3.973 8 N -0.349 5.349 9 C -0.349 4.349 10 H 0.127 0.873 11 C -0.268 4.268 12 N -0.610 5.610 13 Si 0.791 3.209 14 H -0.188 1.188 15 H -0.234 1.234 16 H -0.207 1.207 17 C 0.348 3.652 18 O -0.443 6.443 19 C -0.079 4.079 20 C -0.108 4.108 21 C -0.093 4.093 22 C -0.107 4.107 23 C -0.092 4.092 24 C 0.364 3.636 25 N -0.386 5.386 26 O -0.446 6.446 27 N -0.146 5.146 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.180 0.820 39 H 0.211 0.789 40 H 0.186 0.814 41 H 0.247 0.753 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.111 -14.413 11.404 18.412 hybrid contribution -0.819 0.048 -1.046 1.329 sum 0.292 -14.364 10.358 17.712 Atomic orbital electron populations 1.22172 0.77778 1.02256 1.02218 1.47716 1.08505 1.05462 1.69602 1.21891 0.97459 0.83977 0.96577 1.22660 0.88319 0.94470 0.92307 0.95530 1.23567 0.98117 0.96290 0.98938 1.22107 0.87612 0.94575 0.93025 1.46582 1.01409 1.35313 1.51589 1.19894 0.81836 1.14900 1.18272 0.87316 1.25602 1.01858 0.99717 0.99621 1.70029 1.35335 1.25287 1.30337 0.85385 0.80905 0.76814 0.77816 1.18842 1.23356 1.20691 1.18181 0.86384 0.83596 0.77023 1.90732 1.13896 1.87272 1.52400 1.21066 0.89575 0.94441 1.02775 1.22556 1.03270 0.91450 0.93515 1.22084 0.92946 0.99706 0.94576 1.22596 0.95946 0.98782 0.93376 1.21261 0.94094 0.90585 1.03215 1.17912 0.86263 0.83977 0.75463 1.43692 1.12101 1.08861 1.73967 1.90805 1.67051 1.34700 1.52034 1.67847 1.07920 1.29766 1.09021 0.89812 0.90713 0.92413 0.89089 0.89034 0.88904 0.90167 0.94006 0.97615 0.94920 0.81983 0.78907 0.81445 0.75340 0.75136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.81 6.44 127.77 0.82 3.64 16 2 N -0.58 -18.77 2.89 -849.75 -2.45 -21.22 16 3 C 0.12 4.12 5.26 86.38 0.45 4.57 16 4 C 0.13 5.13 4.49 45.09 0.20 5.33 16 5 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 6 C -0.13 -4.69 7.86 31.25 0.25 -4.45 16 7 C 0.15 7.23 7.45 86.44 0.64 7.88 16 8 N -0.62 -30.31 3.58 -690.88 -2.48 -32.79 16 9 C -0.22 -11.38 10.29 84.03 0.86 -10.51 16 10 H 0.11 5.00 3.77 -2.91 -0.01 4.99 16 11 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 12 N -0.96 -57.45 11.48 21.65 0.25 -57.21 16 13 Si 0.96 43.57 29.55 68.60 2.03 45.59 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 17 C 0.56 18.06 7.61 86.90 0.66 18.72 16 18 O -0.56 -20.23 15.98 -3.77 -0.06 -20.29 16 19 C 0.06 1.65 6.68 42.06 0.28 1.93 16 20 C -0.09 -1.76 9.63 22.68 0.22 -1.54 16 21 C -0.07 -0.96 10.16 22.43 0.23 -0.73 16 22 C -0.09 -1.53 9.63 22.68 0.22 -1.31 16 23 C 0.05 1.13 6.75 42.04 0.28 1.41 16 24 C 0.58 14.05 8.09 86.90 0.70 14.75 16 25 N -0.82 -16.10 8.86 -175.34 -1.55 -17.65 16 26 O -0.57 -16.39 17.16 -3.73 -0.06 -16.45 16 27 N -0.43 -10.82 5.15 -174.09 -0.90 -11.72 16 28 H 0.08 1.97 6.70 -2.39 -0.02 1.95 16 29 H 0.07 2.26 6.42 -2.39 -0.02 2.24 16 30 H 0.06 1.80 6.39 -2.38 -0.02 1.79 16 31 H 0.09 2.96 7.78 -2.38 -0.02 2.94 16 32 H 0.09 2.80 7.53 -2.39 -0.02 2.79 16 33 H 0.09 3.03 8.10 -2.39 -0.02 3.02 16 34 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.04 2.20 7.31 -2.39 -0.02 2.18 16 36 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 37 H 0.24 14.33 8.31 -92.70 -0.77 13.56 16 38 H 0.16 2.98 7.65 -2.91 -0.02 2.96 16 39 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.17 2.46 7.64 -2.91 -0.02 2.44 16 41 H 0.42 7.87 6.77 -92.71 -0.63 7.24 16 42 H 0.42 6.53 8.93 -92.71 -0.83 5.71 16 Total: -1.00 -73.41 347.60 0.70 -72.70 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.36 Total: 23.06 kcal Atomic # 6 Polarization: 29.68 SS G_CDS: 6.29 Total: 35.98 kcal Atomic # 7 Polarization: -133.46 SS G_CDS: -7.13 Total: -140.59 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.12 Total: -36.74 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -73.41 0.70 -72.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085993436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.604 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds