Wall clock time and date at job start Fri Apr 10 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99872 * 2 1 4 4 C 1.53001 * 109.47369 * 84.69953 * 3 2 1 5 5 H 1.08998 * 112.96755 * 295.00670 * 4 3 2 6 6 C 1.53942 * 113.76551 * 66.68511 * 4 3 2 7 7 C 1.53951 * 86.29061 * 137.90818 * 6 4 3 8 8 N 1.47585 * 113.76543 * 163.32608 * 4 3 2 9 9 C 1.36933 * 134.49838 * 41.07288 * 8 4 3 10 10 H 1.08003 * 119.99682 * 4.77945 * 9 8 4 11 11 C 1.38803 * 120.00392 * 184.77788 * 9 8 4 12 12 N 1.31622 * 120.00297 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00336 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46584 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47287 * 119.99762 * 13 11 9 16 16 H 1.48503 * 109.46971 * 240.00206 * 13 11 9 17 17 C 1.34768 * 120.00201 * 179.97438 * 2 1 3 18 18 O 1.21529 * 120.00377 * 185.45845 * 17 2 1 19 19 C 1.48011 * 119.99760 * 5.46196 * 17 2 1 20 20 C 1.39874 * 120.46102 * 200.66915 * 19 17 2 21 21 C 1.38447 * 118.35757 * 180.02562 * 20 19 17 22 22 C 1.39310 * 119.19059 * 0.02562 * 21 20 19 23 23 C 1.48337 * 119.57196 * 180.02562 * 22 21 20 24 24 N 1.34767 * 119.99798 * 179.97438 * 23 22 21 25 25 O 1.21496 * 119.99789 * 0.02562 * 23 22 21 26 26 N 1.32712 * 120.85510 * 359.97438 * 22 21 20 27 27 C 1.31423 * 121.80237 * 359.70321 * 26 22 21 28 28 H 1.08995 * 109.47389 * 84.45732 * 1 2 3 29 29 H 1.09002 * 109.47543 * 324.45825 * 1 2 3 30 30 H 1.09008 * 109.47348 * 204.46052 * 1 2 3 31 31 H 1.09000 * 109.47355 * 204.70447 * 3 2 1 32 32 H 1.09000 * 109.47161 * 324.70088 * 3 2 1 33 33 H 1.09005 * 113.74440 * 252.25076 * 6 4 3 34 34 H 1.09006 * 113.74545 * 23.45383 * 6 4 3 35 35 H 1.08993 * 113.77228 * 90.69444 * 7 6 4 36 36 H 1.09000 * 113.76769 * 221.98046 * 7 6 4 37 37 H 0.96994 * 120.00696 * 180.02562 * 12 11 9 38 38 H 1.07996 * 120.82187 * 359.97438 * 20 19 17 39 39 H 1.07999 * 120.40878 * 180.02562 * 21 20 19 40 40 H 0.96999 * 120.00378 * 0.02562 * 24 23 22 41 41 H 0.97005 * 120.00178 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.63994 * 180.31724 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3370 1.7771 1.4363 5 1 1.3803 2.0313 1.8924 6 6 3.2317 0.8924 2.3233 7 6 3.8182 2.2067 2.8698 8 7 3.3699 2.8183 1.6009 9 6 3.7567 3.9104 0.8710 10 1 3.2026 4.1937 -0.0117 11 6 4.8609 4.6532 1.2654 12 7 5.5360 4.3083 2.3414 13 14 5.3882 6.1435 0.2700 14 1 4.4702 6.3176 -0.8843 15 1 5.3402 7.3543 1.1283 16 1 6.7735 5.9427 -0.2258 17 6 2.1388 -1.1671 0.0005 18 8 3.3500 -1.1695 0.1006 19 6 1.4038 -2.4461 -0.1209 20 6 1.9913 -3.6441 0.2985 21 6 1.2649 -4.8150 0.1643 22 6 -0.0164 -4.7611 -0.3800 23 6 -0.8024 -6.0105 -0.5271 24 7 -2.0429 -5.9682 -1.0521 25 8 -0.3282 -7.0717 -0.1734 26 7 -0.5431 -3.6064 -0.7677 27 6 0.1115 -2.4727 -0.6513 28 1 -0.3634 0.0993 -1.0228 29 1 -0.3634 0.8362 0.5974 30 1 -0.3634 -0.9355 0.4255 31 1 3.1876 1.1166 -0.4295 32 1 1.6527 2.0027 -0.5938 33 1 2.6802 0.3157 3.0660 34 1 3.9469 0.2901 1.7630 35 1 3.2974 2.5887 3.7477 36 1 4.9011 2.1869 2.9928 37 1 6.3074 4.8276 2.6172 38 1 2.9873 -3.6556 0.7158 39 1 1.6862 -5.7587 0.4778 40 1 -2.4216 -5.1209 -1.3341 41 1 -2.5572 -6.7851 -1.1479 42 1 -0.3528 -1.5524 -0.9735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085999150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:02 Heat of formation + Delta-G solvation = 52.942686 kcal Electronic energy + Delta-G solvation = -26152.267199 eV Core-core repulsion = 22328.676991 eV Total energy + Delta-G solvation = -3823.590207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30989 -39.94243 -38.80601 -37.61090 -35.64152 -34.27245 -32.76272 -32.36677 -31.89111 -28.67775 -27.81332 -27.15773 -25.44176 -23.88236 -23.27307 -22.59104 -21.44842 -19.93859 -18.99854 -18.58184 -17.94616 -17.23057 -16.75522 -16.66484 -15.89882 -15.59276 -15.42656 -15.35389 -14.69689 -14.58205 -14.18242 -14.03294 -13.81804 -13.61156 -13.38750 -13.22447 -12.96270 -12.38238 -12.30769 -11.80351 -11.42480 -11.03758 -10.88531 -10.79294 -10.66549 -10.47723 -10.34920 -10.26425 -10.13475 -9.84149 -9.74907 -9.67077 -9.60880 -9.48294 -8.75588 -8.47688 -6.83797 -5.72682 -3.06608 -0.06472 0.77274 2.11516 2.81553 2.89901 2.97457 3.39835 3.44190 3.47457 3.51044 3.73437 4.21323 4.35691 4.46486 4.50017 4.56887 4.78166 4.86955 5.11282 5.21525 5.23611 5.42261 5.49329 5.51819 5.58288 5.65992 5.85773 5.92545 6.02778 6.08874 6.30184 6.36287 6.49869 6.63018 6.73900 6.81586 6.82162 7.23461 7.30153 7.34949 7.54828 7.66248 7.78302 8.02632 8.13513 9.06504 9.74016 10.64258 11.43434 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.034367 B = 0.002535 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.538882 B =11044.709426 C =11340.937999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.600 5.600 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.600 5.600 9 C -0.223 4.223 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.554 3.446 18 O -0.513 6.513 19 C -0.152 4.152 20 C -0.024 4.024 21 C -0.116 4.116 22 C 0.085 3.915 23 C 0.578 3.422 24 N -0.834 5.834 25 O -0.534 6.534 26 N -0.464 5.464 27 C 0.104 3.896 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.413 0.587 41 H 0.406 0.594 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.690 -17.203 -6.137 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.332 5.332 3 C -0.006 4.006 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.327 5.327 9 C -0.350 4.350 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.340 3.660 18 O -0.389 6.389 19 C -0.157 4.157 20 C -0.050 4.050 21 C -0.137 4.137 22 C -0.053 4.053 23 C 0.361 3.639 24 N -0.398 5.398 25 O -0.409 6.409 26 N -0.175 5.175 27 C -0.056 4.056 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.243 0.757 41 H 0.237 0.763 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.215 -17.512 -6.237 24.668 hybrid contribution 0.501 1.184 -0.233 1.306 sum -15.714 -16.328 -6.470 23.567 Atomic orbital electron populations 1.22498 0.80447 1.04033 1.01697 1.47693 1.06601 1.06437 1.72506 1.21934 0.97698 0.81819 0.99184 1.22510 0.93251 0.89407 0.92834 0.94148 1.23822 0.99470 0.97522 0.98712 1.22311 1.00190 0.86535 0.87992 1.45966 1.35921 1.28447 1.22325 1.19004 1.08418 1.02097 1.05524 0.90416 1.24787 0.97880 0.99671 0.98045 1.69836 1.20775 1.40750 1.25115 0.86084 0.78354 0.82429 0.79084 1.20504 1.21829 1.21693 1.18013 0.87178 0.82989 0.77788 1.90833 1.13226 1.86538 1.48258 1.21335 0.96435 0.95536 1.02430 1.21834 1.00242 0.90087 0.92849 1.22129 0.93795 1.00168 0.97589 1.21245 0.93399 0.92394 0.98285 1.17897 0.81726 0.87199 0.77045 1.43630 1.16753 1.14451 1.64926 1.90845 1.70327 1.30133 1.49644 1.67612 1.36618 0.97888 1.15396 1.24213 0.90574 0.96896 0.93888 0.91616 0.90222 0.89874 0.88642 0.91005 0.94132 0.89311 0.96100 0.90501 0.93733 0.82561 0.82706 0.75685 0.76328 0.79140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 8.69 59.84 0.52 0.98 16 2 N -0.60 -7.85 2.81 -182.64 -0.51 -8.36 16 3 C 0.12 1.97 5.39 -4.04 -0.02 1.95 16 4 C 0.13 2.55 4.56 -66.86 -0.31 2.24 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 6 C -0.16 -3.20 7.22 -25.79 -0.19 -3.39 16 7 C 0.15 3.79 7.64 -2.84 -0.02 3.76 16 8 N -0.60 -15.31 3.58 -169.71 -0.61 -15.92 16 9 C -0.22 -6.16 10.51 -15.06 -0.16 -6.32 16 10 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.57 11.32 55.49 0.63 -26.94 16 13 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 C 0.55 7.88 7.22 -12.26 -0.09 7.79 16 18 O -0.51 -9.36 14.26 5.34 0.08 -9.29 16 19 C -0.15 -1.68 5.61 -104.72 -0.59 -2.27 16 20 C -0.02 -0.25 9.71 -38.89 -0.38 -0.63 16 21 C -0.12 -1.12 9.62 -39.11 -0.38 -1.50 16 22 C 0.08 0.83 6.75 -82.93 -0.56 0.27 16 23 C 0.58 5.57 8.09 -12.11 -0.10 5.47 16 24 N -0.83 -4.88 8.86 30.64 0.27 -4.61 16 25 O -0.53 -6.79 17.15 5.37 0.09 -6.70 16 26 N -0.46 -4.13 9.52 -9.48 -0.09 -4.22 16 27 C 0.10 0.92 8.77 -17.17 -0.15 0.77 16 28 H 0.07 0.39 7.21 -51.93 -0.37 0.01 16 29 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.08 0.58 4.93 -51.92 -0.26 0.32 16 31 H 0.10 1.92 7.35 -51.93 -0.38 1.54 16 32 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.95 6.40 -51.93 -0.33 1.61 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 2.09 6.97 -51.93 -0.36 1.73 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.16 1.57 7.86 -52.49 -0.41 1.16 16 39 H 0.16 1.34 7.63 -52.49 -0.40 0.94 16 40 H 0.41 1.80 8.15 -40.82 -0.33 1.46 16 41 H 0.41 1.64 8.93 -40.82 -0.36 1.28 16 42 H 0.19 1.24 4.05 -52.48 -0.21 1.03 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -35.49 349.93 -7.49 -42.98 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.09 Total: 1.80 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -2.51 Total: 8.84 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.31 Total: -60.05 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.17 Total: -15.99 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.49 -7.49 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085999150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.921 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds