Wall clock time and date at job start Fri Apr 10 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99872 * 2 1 4 4 C 1.53001 * 109.47369 * 84.69953 * 3 2 1 5 5 H 1.08998 * 112.96755 * 295.00670 * 4 3 2 6 6 C 1.53942 * 113.76551 * 66.68511 * 4 3 2 7 7 C 1.53951 * 86.29061 * 137.90818 * 6 4 3 8 8 N 1.47585 * 113.76543 * 163.32608 * 4 3 2 9 9 C 1.36933 * 134.49838 * 41.07288 * 8 4 3 10 10 H 1.08003 * 119.99682 * 4.77945 * 9 8 4 11 11 C 1.38803 * 120.00392 * 184.77788 * 9 8 4 12 12 N 1.31622 * 120.00297 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00336 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46584 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47287 * 119.99762 * 13 11 9 16 16 H 1.48503 * 109.46971 * 240.00206 * 13 11 9 17 17 C 1.34768 * 120.00201 * 179.97438 * 2 1 3 18 18 O 1.21529 * 120.00377 * 185.45845 * 17 2 1 19 19 C 1.48011 * 119.99760 * 5.46196 * 17 2 1 20 20 C 1.39874 * 120.46102 * 200.66915 * 19 17 2 21 21 C 1.38447 * 118.35757 * 180.02562 * 20 19 17 22 22 C 1.39310 * 119.19059 * 0.02562 * 21 20 19 23 23 C 1.48337 * 119.57196 * 180.02562 * 22 21 20 24 24 N 1.34767 * 119.99798 * 179.97438 * 23 22 21 25 25 O 1.21496 * 119.99789 * 0.02562 * 23 22 21 26 26 N 1.32712 * 120.85510 * 359.97438 * 22 21 20 27 27 C 1.31423 * 121.80237 * 359.70321 * 26 22 21 28 28 H 1.08995 * 109.47389 * 84.45732 * 1 2 3 29 29 H 1.09002 * 109.47543 * 324.45825 * 1 2 3 30 30 H 1.09008 * 109.47348 * 204.46052 * 1 2 3 31 31 H 1.09000 * 109.47355 * 204.70447 * 3 2 1 32 32 H 1.09000 * 109.47161 * 324.70088 * 3 2 1 33 33 H 1.09005 * 113.74440 * 252.25076 * 6 4 3 34 34 H 1.09006 * 113.74545 * 23.45383 * 6 4 3 35 35 H 1.08993 * 113.77228 * 90.69444 * 7 6 4 36 36 H 1.09000 * 113.76769 * 221.98046 * 7 6 4 37 37 H 0.96994 * 120.00696 * 180.02562 * 12 11 9 38 38 H 1.07996 * 120.82187 * 359.97438 * 20 19 17 39 39 H 1.07999 * 120.40878 * 180.02562 * 21 20 19 40 40 H 0.96999 * 120.00378 * 0.02562 * 24 23 22 41 41 H 0.97005 * 120.00178 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.63994 * 180.31724 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3370 1.7771 1.4363 5 1 1.3803 2.0313 1.8924 6 6 3.2317 0.8924 2.3233 7 6 3.8182 2.2067 2.8698 8 7 3.3699 2.8183 1.6009 9 6 3.7567 3.9104 0.8710 10 1 3.2026 4.1937 -0.0117 11 6 4.8609 4.6532 1.2654 12 7 5.5360 4.3083 2.3414 13 14 5.3882 6.1435 0.2700 14 1 4.4702 6.3176 -0.8843 15 1 5.3402 7.3543 1.1283 16 1 6.7735 5.9427 -0.2258 17 6 2.1388 -1.1671 0.0005 18 8 3.3500 -1.1695 0.1006 19 6 1.4038 -2.4461 -0.1209 20 6 1.9913 -3.6441 0.2985 21 6 1.2649 -4.8150 0.1643 22 6 -0.0164 -4.7611 -0.3800 23 6 -0.8024 -6.0105 -0.5271 24 7 -2.0429 -5.9682 -1.0521 25 8 -0.3282 -7.0717 -0.1734 26 7 -0.5431 -3.6064 -0.7677 27 6 0.1115 -2.4727 -0.6513 28 1 -0.3634 0.0993 -1.0228 29 1 -0.3634 0.8362 0.5974 30 1 -0.3634 -0.9355 0.4255 31 1 3.1876 1.1166 -0.4295 32 1 1.6527 2.0027 -0.5938 33 1 2.6802 0.3157 3.0660 34 1 3.9469 0.2901 1.7630 35 1 3.2974 2.5887 3.7477 36 1 4.9011 2.1869 2.9928 37 1 6.3074 4.8276 2.6172 38 1 2.9873 -3.6556 0.7158 39 1 1.6862 -5.7587 0.4778 40 1 -2.4216 -5.1209 -1.3341 41 1 -2.5572 -6.7851 -1.1479 42 1 -0.3528 -1.5524 -0.9735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085999150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:01 Heat of formation + Delta-G solvation = 25.394260 kcal Electronic energy + Delta-G solvation = -26153.461788 eV Core-core repulsion = 22328.676991 eV Total energy + Delta-G solvation = -3824.784797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.15481 -40.93352 -39.83126 -39.14584 -36.76640 -34.96637 -34.25000 -33.52086 -32.95811 -29.91376 -29.81299 -28.05011 -26.42584 -25.26822 -24.62974 -24.05191 -22.27014 -21.09748 -20.68341 -19.27463 -18.91840 -18.56103 -18.01849 -17.56149 -17.10413 -16.92453 -16.32116 -16.15757 -16.12999 -15.82352 -15.51024 -15.31475 -15.06180 -14.49341 -14.34107 -14.23906 -14.08828 -13.84457 -13.65764 -13.35946 -12.95272 -12.69062 -12.52322 -12.44663 -12.25877 -11.78763 -11.57322 -11.57077 -11.30020 -11.25626 -11.12045 -10.82837 -10.76712 -10.67675 -10.30843 -9.68450 -8.86804 -7.85987 -5.20729 -0.87780 0.02644 1.29217 1.45600 1.47722 1.57160 1.78510 1.97406 2.25344 2.50038 2.71281 3.05167 3.28792 3.37123 3.46804 3.64539 3.76833 3.83656 3.94002 4.01624 4.20501 4.23174 4.33126 4.49411 4.54133 4.62732 4.77987 4.80902 4.83861 4.89434 4.92562 5.04980 5.10999 5.24679 5.29000 5.45656 5.56541 5.77367 5.78360 5.97425 6.20886 6.33022 6.53915 6.93235 7.06200 7.19104 7.64686 8.60900 9.30915 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.034367 B = 0.002535 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.538882 B =11044.709426 C =11340.937999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.595 5.595 3 C 0.131 3.869 4 C 0.136 3.864 5 H 0.065 0.935 6 C -0.134 4.134 7 C 0.147 3.853 8 N -0.629 5.629 9 C -0.222 4.222 10 H 0.091 0.909 11 C -0.075 4.075 12 N -0.958 5.958 13 Si 0.977 3.023 14 H -0.259 1.259 15 H -0.294 1.294 16 H -0.297 1.297 17 C 0.552 3.448 18 O -0.565 6.565 19 C -0.163 4.163 20 C -0.026 4.026 21 C -0.119 4.119 22 C 0.084 3.916 23 C 0.576 3.424 24 N -0.811 5.811 25 O -0.571 6.571 26 N -0.454 5.454 27 C 0.118 3.882 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.038 0.962 37 H 0.245 0.755 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.423 0.577 41 H 0.417 0.583 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 -17.544 -7.759 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.326 5.326 3 C 0.007 3.993 4 C 0.029 3.971 5 H 0.083 0.917 6 C -0.172 4.172 7 C 0.022 3.978 8 N -0.356 5.356 9 C -0.351 4.351 10 H 0.108 0.892 11 C -0.267 4.267 12 N -0.607 5.607 13 Si 0.806 3.194 14 H -0.183 1.183 15 H -0.222 1.222 16 H -0.225 1.225 17 C 0.340 3.660 18 O -0.444 6.444 19 C -0.168 4.168 20 C -0.053 4.053 21 C -0.140 4.140 22 C -0.054 4.054 23 C 0.358 3.642 24 N -0.375 5.375 25 O -0.450 6.450 26 N -0.166 5.166 27 C -0.041 4.041 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.169 0.831 39 H 0.178 0.822 40 H 0.255 0.745 41 H 0.250 0.750 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -19.888 -17.870 -7.901 27.880 hybrid contribution 1.489 1.204 0.272 1.934 sum -18.399 -16.666 -7.628 25.970 Atomic orbital electron populations 1.22896 0.76941 1.05414 1.04306 1.47674 1.08558 1.04629 1.71780 1.21465 0.96953 0.83976 0.96927 1.22685 0.92712 0.86925 0.94742 0.91746 1.23532 0.99060 0.95787 0.98841 1.22240 0.98099 0.89205 0.88254 1.46316 1.37719 1.28971 1.22596 1.19465 1.07966 1.02050 1.05583 0.89151 1.25677 0.98562 1.03030 0.99480 1.70047 1.21380 1.42135 1.27173 0.85020 0.77635 0.78660 0.78103 1.18264 1.22173 1.22486 1.18466 0.86728 0.84093 0.76682 1.90817 1.15601 1.87312 1.50679 1.21114 0.97414 0.93913 1.04388 1.21860 1.00239 0.90384 0.92808 1.22175 0.93958 1.00061 0.97762 1.21394 0.93360 0.92885 0.97766 1.17925 0.82540 0.86556 0.77136 1.43499 1.15432 1.15625 1.62958 1.90835 1.71318 1.31228 1.51589 1.67710 1.36138 0.97564 1.15146 1.24612 0.89376 0.97798 0.92345 0.88174 0.89347 0.88172 0.92459 0.88951 0.91278 0.91190 0.96254 0.94384 0.94562 0.83052 0.82208 0.74461 0.75046 0.76283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 8.69 127.77 1.11 1.64 16 2 N -0.60 -14.06 2.81 -850.03 -2.39 -16.45 16 3 C 0.13 4.23 5.39 86.38 0.47 4.70 16 4 C 0.14 5.22 4.56 45.09 0.21 5.43 16 5 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 6 C -0.13 -5.45 7.22 31.25 0.23 -5.23 16 7 C 0.15 7.43 7.64 86.44 0.66 8.09 16 8 N -0.63 -32.31 3.58 -690.83 -2.48 -34.78 16 9 C -0.22 -12.32 10.51 84.03 0.88 -11.43 16 10 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 11 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 12 N -0.96 -59.72 11.32 21.65 0.25 -59.48 16 13 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 16 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 17 C 0.55 15.08 7.22 86.84 0.63 15.71 16 18 O -0.56 -21.06 14.26 -3.81 -0.05 -21.12 16 19 C -0.16 -3.30 5.61 -19.93 -0.11 -3.41 16 20 C -0.03 -0.53 9.71 22.72 0.22 -0.31 16 21 C -0.12 -2.16 9.62 22.58 0.22 -1.94 16 22 C 0.08 1.45 6.75 41.96 0.28 1.73 16 23 C 0.58 9.96 8.09 86.93 0.70 10.66 16 24 N -0.81 -7.26 8.86 -175.27 -1.55 -8.82 16 25 O -0.57 -13.94 17.15 -3.70 -0.06 -14.00 16 26 N -0.45 -6.54 9.52 -183.90 -1.75 -8.29 16 27 C 0.12 1.66 8.77 85.11 0.75 2.41 16 28 H 0.10 0.58 7.21 -2.39 -0.02 0.57 16 29 H 0.09 0.99 8.11 -2.39 -0.02 0.97 16 30 H 0.10 0.90 4.93 -2.38 -0.01 0.89 16 31 H 0.06 2.33 7.35 -2.39 -0.02 2.31 16 32 H 0.09 2.61 8.11 -2.39 -0.02 2.59 16 33 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.07 3.16 6.40 -2.38 -0.02 3.14 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.04 2.19 6.97 -2.39 -0.02 2.17 16 37 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.15 3.13 7.86 -2.91 -0.02 3.11 16 39 H 0.16 2.70 7.63 -2.91 -0.02 2.68 16 40 H 0.42 2.23 8.15 -92.71 -0.76 1.47 16 41 H 0.42 2.28 8.93 -92.70 -0.83 1.46 16 42 H 0.22 1.71 4.05 -2.91 -0.01 1.70 16 Total: -1.00 -80.69 349.93 0.20 -80.49 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -0.49 Total: 10.09 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 6.70 Total: 24.14 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -7.92 Total: -127.81 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.12 Total: -35.12 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -80.69 0.20 -80.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085999150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.882 kcal (2) G-P(sol) polarization free energy of solvation -80.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds