Wall clock time and date at job start Fri Apr 10 2020 18:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00129 * 2 1 4 4 C 1.52997 * 109.47114 * 263.19510 * 3 2 1 5 5 H 1.09004 * 112.96524 * 311.51361 * 4 3 2 6 6 C 1.53943 * 113.76843 * 179.83626 * 4 3 2 7 7 C 1.53946 * 86.29213 * 222.09285 * 6 4 3 8 8 N 1.47577 * 113.77017 * 83.34158 * 4 3 2 9 9 C 1.36939 * 134.49584 * 318.94057 * 8 4 3 10 10 H 1.08001 * 119.99410 * 2.84572 * 9 8 4 11 11 C 1.38814 * 120.00321 * 182.84491 * 9 8 4 12 12 N 1.31614 * 119.99875 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99834 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47099 * 59.99824 * 13 11 9 15 15 H 1.48498 * 109.46688 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47036 * 299.99902 * 13 11 9 17 17 C 1.34778 * 119.99431 * 180.02562 * 2 1 3 18 18 O 1.21519 * 119.99354 * 185.06218 * 17 2 1 19 19 C 1.48167 * 120.00346 * 5.06494 * 17 2 1 20 20 C 1.39247 * 119.65442 * 174.53884 * 19 17 2 21 21 C 1.39755 * 118.90133 * 180.27240 * 20 19 17 22 22 C 1.48140 * 120.88833 * 180.02562 * 21 20 19 23 23 N 1.34778 * 119.99959 * 179.97438 * 22 21 20 24 24 O 1.21516 * 120.00327 * 359.97438 * 22 21 20 25 25 C 1.39806 * 118.21969 * 0.02562 * 21 20 19 26 26 C 1.38493 * 119.19440 * 359.97438 * 25 21 20 27 27 N 1.31467 * 121.03482 * 0.02562 * 26 25 21 28 28 H 1.08998 * 109.46994 * 238.45523 * 1 2 3 29 29 H 1.09004 * 109.47000 * 358.44924 * 1 2 3 30 30 H 1.08993 * 109.47434 * 118.44904 * 1 2 3 31 31 H 1.08995 * 109.46881 * 23.19537 * 3 2 1 32 32 H 1.08999 * 109.46984 * 143.19276 * 3 2 1 33 33 H 1.09003 * 113.74418 * 336.43928 * 6 4 3 34 34 H 1.09003 * 113.74637 * 107.63597 * 6 4 3 35 35 H 1.09003 * 113.77259 * 137.90978 * 7 6 4 36 36 H 1.09004 * 113.76453 * 269.19070 * 7 6 4 37 37 H 0.96993 * 120.00172 * 179.97438 * 12 11 9 38 38 H 1.07997 * 120.55284 * 0.25160 * 20 19 17 39 39 H 0.97005 * 119.99888 * 359.97438 * 23 22 21 40 40 H 0.97000 * 119.99901 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.40396 * 179.97438 * 25 21 20 42 42 H 1.07996 * 119.48968 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.6006 1.6249 -1.4323 5 1 3.0680 0.7945 -1.9616 6 6 3.3765 2.9495 -1.5473 7 6 2.5146 3.2307 -2.7915 8 7 1.5353 2.2985 -2.2000 9 6 0.1816 2.1274 -2.3166 10 1 -0.3208 1.3769 -1.7243 11 6 -0.5448 2.9184 -3.1961 12 7 0.0674 3.8333 -3.9175 13 14 -2.3914 2.6854 -3.3546 14 1 -3.0356 2.9272 -2.0386 15 1 -2.9275 3.6453 -4.3527 16 1 -2.6789 1.2978 -3.7989 17 6 2.1388 -1.1673 -0.0005 18 8 3.3504 -1.1694 0.0923 19 6 1.4023 -2.4479 -0.1144 20 6 2.1097 -3.6417 -0.2291 21 6 1.3991 -4.8398 -0.3413 22 6 2.1071 -6.1352 -0.4652 23 7 1.4038 -7.2800 -0.5718 24 8 3.3219 -6.1657 -0.4705 25 6 0.0022 -4.7832 -0.3336 26 6 -0.6233 -3.5532 -0.2156 27 7 0.0756 -2.4445 -0.1118 28 1 -0.3633 -0.5376 0.8758 29 1 -0.3633 1.0273 0.0278 30 1 -0.3634 -0.4895 -0.9035 31 1 1.5612 2.0556 0.4048 32 1 3.0918 1.1719 0.6157 33 1 3.1941 3.6381 -0.7223 34 1 4.4365 2.8197 -1.7658 35 1 2.1588 4.2590 -2.8563 36 1 2.9567 2.8742 -3.7219 37 1 -0.4401 4.3858 -4.5323 38 1 3.1897 -3.6418 -0.2317 39 1 0.4341 -7.2558 -0.5672 40 1 1.8674 -8.1283 -0.6525 41 1 -0.5820 -5.6875 -0.4187 42 1 -1.7021 -3.5038 -0.2096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086007571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:08 Heat of formation + Delta-G solvation = 46.735852 kcal Electronic energy + Delta-G solvation = -26696.503517 eV Core-core repulsion = 22872.644161 eV Total energy + Delta-G solvation = -3823.859356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08362 -39.70673 -38.75342 -37.62894 -35.10463 -34.40546 -32.66511 -32.18372 -31.63899 -28.54527 -27.70897 -26.36908 -25.25671 -24.22345 -23.25866 -22.48720 -21.52841 -19.69283 -19.02486 -18.31356 -17.60463 -16.96460 -16.67756 -16.13594 -16.04922 -15.47419 -15.26485 -15.05981 -14.88875 -14.75512 -14.15648 -14.09979 -13.81708 -13.47741 -13.11519 -12.83895 -12.49590 -12.29932 -11.96590 -11.40872 -11.31028 -11.06188 -10.92962 -10.69350 -10.67017 -10.48906 -10.28557 -10.18576 -10.11606 -9.97556 -9.63831 -9.48721 -9.32708 -9.22353 -8.73192 -8.13685 -6.79476 -5.70545 -3.01105 0.21886 0.61655 2.37291 2.86975 2.94908 3.26130 3.38971 3.42630 3.45377 3.75505 3.99548 4.20085 4.39269 4.48165 4.54106 4.70483 4.95442 5.20523 5.35665 5.45112 5.50147 5.62311 5.70058 5.82250 5.91513 5.98181 6.09532 6.14874 6.19773 6.29179 6.30747 6.53227 6.53485 6.68665 6.78038 6.79082 7.01579 7.33848 7.47663 7.50112 7.65447 7.73778 7.74740 8.05534 8.37564 9.10988 9.78150 10.70445 11.47258 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.003749 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.274813 B = 7467.581120 C = 8574.802606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.577 5.577 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.046 0.954 6 C -0.159 4.159 7 C 0.162 3.838 8 N -0.602 5.602 9 C -0.224 4.224 10 H 0.089 0.911 11 C -0.010 4.010 12 N -0.922 5.922 13 Si 0.903 3.097 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.287 1.287 17 C 0.561 3.439 18 O -0.538 6.538 19 C 0.090 3.910 20 C -0.057 4.057 21 C -0.103 4.103 22 C 0.566 3.434 23 N -0.848 5.848 24 O -0.525 6.525 25 C -0.126 4.126 26 C 0.093 3.907 27 N -0.428 5.428 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.252 0.748 38 H 0.161 0.839 39 H 0.402 0.598 40 H 0.408 0.592 41 H 0.142 0.858 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 -18.182 9.427 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.306 5.306 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.063 0.937 6 C -0.198 4.198 7 C 0.037 3.963 8 N -0.328 5.328 9 C -0.352 4.352 10 H 0.107 0.893 11 C -0.206 4.206 12 N -0.569 5.569 13 Si 0.734 3.266 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.214 1.214 17 C 0.347 3.653 18 O -0.416 6.416 19 C -0.048 4.048 20 C -0.078 4.078 21 C -0.114 4.114 22 C 0.351 3.649 23 N -0.412 5.412 24 O -0.400 6.400 25 C -0.147 4.147 26 C -0.066 4.066 27 N -0.140 5.140 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.178 0.822 39 H 0.231 0.769 40 H 0.240 0.760 41 H 0.159 0.841 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.782 -17.079 9.435 19.593 hybrid contribution -1.213 -1.460 -0.625 1.998 sum -2.995 -18.540 8.810 20.744 Atomic orbital electron populations 1.22147 0.77890 1.02449 1.02057 1.47677 1.08226 1.05399 1.69270 1.22064 0.96551 0.83383 0.98665 1.22600 0.89683 0.94472 0.91273 0.93698 1.23780 0.97419 0.97466 1.01114 1.22121 0.86265 0.96375 0.91576 1.46181 1.01201 1.35105 1.50334 1.19310 0.80766 1.16075 1.19022 0.89316 1.24787 0.97692 0.99238 0.98930 1.69817 1.34234 1.24086 1.28762 0.86337 0.85603 0.77225 0.77472 1.21041 1.21705 1.21358 1.17753 0.86459 0.82895 0.78206 1.90777 1.12903 1.86735 1.51150 1.21342 0.89765 0.94317 0.99424 1.22240 1.03088 0.90117 0.92359 1.20223 0.93905 0.93998 1.03278 1.18113 0.86885 0.84011 0.75902 1.43685 1.11235 1.08960 1.77354 1.90869 1.13291 1.87063 1.48820 1.22495 0.93689 1.00378 0.98137 1.22952 1.01007 0.86968 0.95671 1.68149 1.07207 1.30603 1.08057 0.92190 0.90270 0.91039 0.89448 0.90530 0.90701 0.92940 0.91233 0.95815 0.93787 0.82181 0.76854 0.76018 0.84061 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 7.28 59.85 0.44 2.03 16 2 N -0.58 -10.37 2.89 -182.58 -0.53 -10.89 16 3 C 0.12 2.15 5.25 -4.04 -0.02 2.13 16 4 C 0.13 2.72 4.49 -66.87 -0.30 2.42 16 5 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.16 -3.11 7.86 -25.81 -0.20 -3.31 16 7 C 0.16 3.90 7.45 -2.97 -0.02 3.88 16 8 N -0.60 -15.18 3.57 -170.76 -0.61 -15.79 16 9 C -0.22 -5.99 10.35 -15.06 -0.16 -6.15 16 10 H 0.09 2.19 3.94 -52.49 -0.21 1.99 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.92 -27.29 11.45 55.49 0.64 -26.65 16 13 Si 0.90 21.61 29.55 -169.99 -5.02 16.58 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.56 10.19 7.60 -12.18 -0.09 10.10 16 18 O -0.54 -10.93 16.00 5.35 0.09 -10.85 16 19 C 0.09 1.37 6.68 -83.05 -0.55 0.82 16 20 C -0.06 -0.79 9.19 -38.64 -0.36 -1.14 16 21 C -0.10 -1.10 5.91 -104.68 -0.62 -1.72 16 22 C 0.57 5.93 8.07 -12.19 -0.10 5.83 16 23 N -0.85 -4.55 8.83 30.60 0.27 -4.28 16 24 O -0.53 -7.81 17.28 5.35 0.09 -7.71 16 25 C -0.13 -0.94 9.62 -38.90 -0.37 -1.32 16 26 C 0.09 0.85 11.17 -17.61 -0.20 0.65 16 27 N -0.43 -5.64 5.94 -9.85 -0.06 -5.70 16 28 H 0.06 0.85 7.14 -51.93 -0.37 0.48 16 29 H 0.08 1.38 6.40 -51.93 -0.33 1.04 16 30 H 0.07 1.25 6.59 -51.93 -0.34 0.91 16 31 H 0.09 1.60 7.77 -51.93 -0.40 1.19 16 32 H 0.08 1.34 7.57 -51.93 -0.39 0.95 16 33 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.81 7.29 -51.93 -0.38 1.43 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.16 2.44 7.34 -52.49 -0.39 2.06 16 39 H 0.40 0.87 6.97 -40.82 -0.28 0.59 16 40 H 0.41 1.67 8.93 -40.82 -0.36 1.31 16 41 H 0.14 0.41 6.53 -52.49 -0.34 0.07 16 42 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -36.10 348.60 -7.59 -43.69 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.05 Total: 2.52 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: -2.65 Total: 13.83 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.29 Total: -63.31 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.18 Total: -18.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.10 -7.59 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086007571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.421 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds