Wall clock time and date at job start Fri Apr 10 2020 18:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00129 * 2 1 4 4 C 1.52997 * 109.47114 * 263.19510 * 3 2 1 5 5 H 1.09004 * 112.96524 * 311.51361 * 4 3 2 6 6 C 1.53943 * 113.76843 * 179.83626 * 4 3 2 7 7 C 1.53946 * 86.29213 * 222.09285 * 6 4 3 8 8 N 1.47577 * 113.77017 * 83.34158 * 4 3 2 9 9 C 1.36939 * 134.49584 * 318.94057 * 8 4 3 10 10 H 1.08001 * 119.99410 * 2.84572 * 9 8 4 11 11 C 1.38814 * 120.00321 * 182.84491 * 9 8 4 12 12 N 1.31614 * 119.99875 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99834 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47099 * 59.99824 * 13 11 9 15 15 H 1.48498 * 109.46688 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47036 * 299.99902 * 13 11 9 17 17 C 1.34778 * 119.99431 * 180.02562 * 2 1 3 18 18 O 1.21519 * 119.99354 * 185.06218 * 17 2 1 19 19 C 1.48167 * 120.00346 * 5.06494 * 17 2 1 20 20 C 1.39247 * 119.65442 * 174.53884 * 19 17 2 21 21 C 1.39755 * 118.90133 * 180.27240 * 20 19 17 22 22 C 1.48140 * 120.88833 * 180.02562 * 21 20 19 23 23 N 1.34778 * 119.99959 * 179.97438 * 22 21 20 24 24 O 1.21516 * 120.00327 * 359.97438 * 22 21 20 25 25 C 1.39806 * 118.21969 * 0.02562 * 21 20 19 26 26 C 1.38493 * 119.19440 * 359.97438 * 25 21 20 27 27 N 1.31467 * 121.03482 * 0.02562 * 26 25 21 28 28 H 1.08998 * 109.46994 * 238.45523 * 1 2 3 29 29 H 1.09004 * 109.47000 * 358.44924 * 1 2 3 30 30 H 1.08993 * 109.47434 * 118.44904 * 1 2 3 31 31 H 1.08995 * 109.46881 * 23.19537 * 3 2 1 32 32 H 1.08999 * 109.46984 * 143.19276 * 3 2 1 33 33 H 1.09003 * 113.74418 * 336.43928 * 6 4 3 34 34 H 1.09003 * 113.74637 * 107.63597 * 6 4 3 35 35 H 1.09003 * 113.77259 * 137.90978 * 7 6 4 36 36 H 1.09004 * 113.76453 * 269.19070 * 7 6 4 37 37 H 0.96993 * 120.00172 * 179.97438 * 12 11 9 38 38 H 1.07997 * 120.55284 * 0.25160 * 20 19 17 39 39 H 0.97005 * 119.99888 * 359.97438 * 23 22 21 40 40 H 0.97000 * 119.99901 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.40396 * 179.97438 * 25 21 20 42 42 H 1.07996 * 119.48968 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.6006 1.6249 -1.4323 5 1 3.0680 0.7945 -1.9616 6 6 3.3765 2.9495 -1.5473 7 6 2.5146 3.2307 -2.7915 8 7 1.5353 2.2985 -2.2000 9 6 0.1816 2.1274 -2.3166 10 1 -0.3208 1.3769 -1.7243 11 6 -0.5448 2.9184 -3.1961 12 7 0.0674 3.8333 -3.9175 13 14 -2.3914 2.6854 -3.3546 14 1 -3.0356 2.9272 -2.0386 15 1 -2.9275 3.6453 -4.3527 16 1 -2.6789 1.2978 -3.7989 17 6 2.1388 -1.1673 -0.0005 18 8 3.3504 -1.1694 0.0923 19 6 1.4023 -2.4479 -0.1144 20 6 2.1097 -3.6417 -0.2291 21 6 1.3991 -4.8398 -0.3413 22 6 2.1071 -6.1352 -0.4652 23 7 1.4038 -7.2800 -0.5718 24 8 3.3219 -6.1657 -0.4705 25 6 0.0022 -4.7832 -0.3336 26 6 -0.6233 -3.5532 -0.2156 27 7 0.0756 -2.4445 -0.1118 28 1 -0.3633 -0.5376 0.8758 29 1 -0.3633 1.0273 0.0278 30 1 -0.3634 -0.4895 -0.9035 31 1 1.5612 2.0556 0.4048 32 1 3.0918 1.1719 0.6157 33 1 3.1941 3.6381 -0.7223 34 1 4.4365 2.8197 -1.7658 35 1 2.1588 4.2590 -2.8563 36 1 2.9567 2.8742 -3.7219 37 1 -0.4401 4.3858 -4.5323 38 1 3.1897 -3.6418 -0.2317 39 1 0.4341 -7.2558 -0.5672 40 1 1.8674 -8.1283 -0.6525 41 1 -0.5820 -5.6875 -0.4187 42 1 -1.7021 -3.5038 -0.2096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086007571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:08 Heat of formation + Delta-G solvation = 18.722790 kcal Electronic energy + Delta-G solvation = -26697.718255 eV Core-core repulsion = 22872.644161 eV Total energy + Delta-G solvation = -3825.074093 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05796 -40.85296 -39.91385 -39.25420 -36.53420 -35.18437 -34.23365 -33.48394 -32.59255 -30.20597 -29.53805 -27.67127 -26.20006 -25.41134 -25.22498 -23.79074 -22.55867 -20.96932 -20.67062 -19.25340 -18.67816 -18.48237 -17.89323 -17.32196 -16.94674 -16.84546 -16.70742 -16.25711 -16.07516 -15.92257 -15.62433 -15.38849 -14.98707 -14.74183 -14.64695 -14.38610 -13.88342 -13.57312 -13.21239 -13.07230 -12.97147 -12.87712 -12.67322 -12.46522 -12.27316 -11.80439 -11.60872 -11.48004 -11.35805 -11.23492 -11.10321 -10.80617 -10.76879 -10.38797 -10.38612 -9.60041 -8.83998 -7.80506 -5.13019 -0.64078 -0.29695 1.42956 1.48332 1.52457 1.57718 1.83041 1.94379 2.28851 2.53295 2.76458 2.97928 3.35097 3.46465 3.52633 3.62969 3.75968 3.82825 3.96949 4.11369 4.26794 4.32369 4.46250 4.56008 4.60100 4.66057 4.68856 4.80854 4.83392 4.91975 4.99753 5.04652 5.12918 5.35760 5.40445 5.53849 5.65085 5.72335 5.74879 6.00199 6.26741 6.32591 6.60866 7.00357 7.02544 7.14231 7.71719 8.67627 9.37763 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.003749 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.274813 B = 7467.581120 C = 8574.802606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.584 5.584 3 C 0.125 3.875 4 C 0.129 3.871 5 H 0.023 0.977 6 C -0.131 4.131 7 C 0.154 3.846 8 N -0.623 5.623 9 C -0.224 4.224 10 H 0.107 0.893 11 C -0.076 4.076 12 N -0.961 5.961 13 Si 0.969 3.031 14 H -0.266 1.266 15 H -0.303 1.303 16 H -0.278 1.278 17 C 0.555 3.445 18 O -0.573 6.573 19 C 0.062 3.938 20 C -0.075 4.075 21 C -0.109 4.109 22 C 0.565 3.435 23 N -0.816 5.816 24 O -0.581 6.581 25 C -0.087 4.087 26 C 0.095 3.905 27 N -0.445 5.445 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.005 0.995 37 H 0.243 0.757 38 H 0.131 0.869 39 H 0.422 0.578 40 H 0.418 0.582 41 H 0.202 0.798 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 -21.102 10.798 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.313 5.313 3 C 0.001 3.999 4 C 0.022 3.978 5 H 0.040 0.960 6 C -0.170 4.170 7 C 0.029 3.971 8 N -0.349 5.349 9 C -0.352 4.352 10 H 0.124 0.876 11 C -0.268 4.268 12 N -0.611 5.611 13 Si 0.797 3.203 14 H -0.192 1.192 15 H -0.230 1.230 16 H -0.204 1.204 17 C 0.342 3.658 18 O -0.453 6.453 19 C -0.074 4.074 20 C -0.097 4.097 21 C -0.120 4.120 22 C 0.349 3.651 23 N -0.381 5.381 24 O -0.461 6.461 25 C -0.107 4.107 26 C -0.064 4.064 27 N -0.158 5.158 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.023 0.977 37 H 0.052 0.948 38 H 0.149 0.851 39 H 0.255 0.745 40 H 0.252 0.748 41 H 0.218 0.782 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.812 -20.054 10.839 23.298 hybrid contribution -0.338 -0.745 -1.056 1.336 sum -5.151 -20.798 9.784 23.555 Atomic orbital electron populations 1.22099 0.76879 1.01812 1.02733 1.47772 1.08880 1.05182 1.69441 1.21865 0.97301 0.84123 0.96568 1.22639 0.88641 0.94395 0.92167 0.95969 1.23584 0.98082 0.96291 0.99026 1.22059 0.87402 0.94799 0.92877 1.46561 1.01544 1.35919 1.50849 1.19883 0.81821 1.15398 1.18144 0.87552 1.25656 1.02235 0.99557 0.99351 1.70038 1.35612 1.25509 1.29971 0.85281 0.80345 0.76974 0.77677 1.19168 1.23024 1.20393 1.18304 0.86367 0.84015 0.77095 1.90733 1.14502 1.87477 1.52637 1.20786 0.90782 0.92842 1.03023 1.22055 1.02014 0.91518 0.94083 1.20331 0.95402 0.92899 1.03410 1.18161 0.86281 0.84996 0.75623 1.43442 1.12221 1.07807 1.74664 1.90853 1.15712 1.87765 1.51766 1.23091 0.92111 1.02201 0.93295 1.23792 1.02719 0.86286 0.93648 1.68031 1.06029 1.32980 1.08772 0.89677 0.91431 0.92024 0.88953 0.89488 0.88802 0.90325 0.93756 0.97672 0.94797 0.85139 0.74473 0.74846 0.78151 0.76899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.38 7.28 127.77 0.93 4.31 16 2 N -0.58 -21.04 2.89 -849.83 -2.46 -23.49 16 3 C 0.12 4.61 5.25 86.38 0.45 5.06 16 4 C 0.13 5.55 4.49 45.09 0.20 5.75 16 5 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 6 C -0.13 -5.10 7.86 31.25 0.25 -4.85 16 7 C 0.15 7.68 7.45 86.48 0.64 8.32 16 8 N -0.62 -31.99 3.57 -694.17 -2.48 -34.47 16 9 C -0.22 -12.08 10.35 84.03 0.87 -11.21 16 10 H 0.11 5.20 3.94 -2.91 -0.01 5.19 16 11 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 12 N -0.96 -58.75 11.45 21.65 0.25 -58.50 16 13 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 C 0.55 20.71 7.60 86.88 0.66 21.37 16 18 O -0.57 -24.51 16.00 -3.77 -0.06 -24.57 16 19 C 0.06 1.88 6.68 41.90 0.28 2.16 16 20 C -0.07 -2.13 9.19 22.88 0.21 -1.92 16 21 C -0.11 -2.11 5.91 -19.90 -0.12 -2.22 16 22 C 0.56 10.83 8.07 86.87 0.70 11.53 16 23 N -0.82 -5.61 8.83 -175.40 -1.55 -7.16 16 24 O -0.58 -17.54 17.28 -3.77 -0.07 -17.61 16 25 C -0.09 -0.85 9.62 22.71 0.22 -0.63 16 26 C 0.10 1.29 11.17 84.81 0.95 2.23 16 27 N -0.45 -10.74 5.94 -185.08 -1.10 -11.84 16 28 H 0.08 2.24 7.14 -2.39 -0.02 2.22 16 29 H 0.07 2.27 6.40 -2.38 -0.02 2.25 16 30 H 0.06 2.07 6.59 -2.39 -0.02 2.06 16 31 H 0.09 3.31 7.77 -2.39 -0.02 3.29 16 32 H 0.09 3.03 7.57 -2.39 -0.02 3.01 16 33 H 0.09 3.31 8.10 -2.39 -0.02 3.29 16 34 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.04 2.41 7.29 -2.39 -0.02 2.39 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.13 4.41 7.34 -2.91 -0.02 4.39 16 39 H 0.42 -0.61 6.97 -92.70 -0.65 -1.26 16 40 H 0.42 2.01 8.93 -92.71 -0.83 1.18 16 41 H 0.20 -0.47 6.53 -2.91 -0.02 -0.49 16 42 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -85.53 348.60 0.90 -84.63 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -0.38 Total: 10.41 kcal Atomic # 6 Polarization: 29.36 SS G_CDS: 6.71 Total: 36.07 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -7.34 Total: -135.47 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.13 Total: -42.18 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -85.53 0.90 -84.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086007571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.355 kcal (2) G-P(sol) polarization free energy of solvation -85.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds