Wall clock time and date at job start Fri Apr 10 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39895 * 109.47545 * 2 1 4 4 F 1.39906 * 109.47015 * 239.99443 * 2 1 3 5 5 C 1.50708 * 109.46746 * 119.99778 * 2 1 3 6 6 O 1.21275 * 119.99965 * 17.07696 * 5 2 1 7 7 N 1.34773 * 119.99778 * 197.07173 * 5 2 1 8 8 C 1.46932 * 120.63343 * 4.02657 * 7 5 2 9 9 C 1.53189 * 108.77441 * 233.62670 * 8 7 5 10 10 C 1.53037 * 109.31585 * 305.36442 * 9 8 7 11 11 O 1.42896 * 109.46217 * 181.38419 * 10 9 8 12 12 C 1.42900 * 113.99984 * 149.97094 * 11 10 9 13 13 C 1.53490 * 114.20958 * 150.00110 * 12 11 10 14 14 N 1.47064 * 87.98551 * 87.52169 * 13 12 11 15 15 C 1.36943 * 136.05871 * 206.86890 * 14 13 12 16 16 H 1.08003 * 119.99859 * 356.08174 * 15 14 13 17 17 C 1.38803 * 120.00070 * 176.08601 * 15 14 13 18 18 N 1.31617 * 120.00500 * 352.86135 * 17 15 14 19 19 Si 1.86805 * 119.99892 * 172.86324 * 17 15 14 20 20 H 1.48499 * 109.47413 * 94.95516 * 19 17 15 21 21 H 1.48507 * 109.47146 * 214.95318 * 19 17 15 22 22 H 1.48505 * 109.47205 * 334.95143 * 19 17 15 23 23 C 1.47062 * 87.88467 * 27.12389 * 14 13 12 24 24 C 1.53044 * 109.52685 * 61.36792 * 10 9 8 25 25 C 1.46922 * 120.63111 * 184.04098 * 7 5 2 26 26 H 1.09004 * 109.47191 * 300.00715 * 1 2 3 27 27 H 1.09007 * 109.46940 * 60.00202 * 1 2 3 28 28 H 1.08992 * 109.47384 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.58670 * 113.83755 * 8 7 5 30 30 H 1.08998 * 109.69798 * 353.48467 * 8 7 5 31 31 H 1.09003 * 109.49898 * 185.41136 * 9 8 7 32 32 H 1.09002 * 109.49483 * 65.31811 * 9 8 7 33 33 H 1.09004 * 109.45592 * 301.35992 * 10 9 8 34 34 H 1.09005 * 113.27961 * 16.93402 * 12 11 10 35 35 H 1.09006 * 113.46722 * 332.74170 * 13 12 11 36 36 H 1.08995 * 113.52392 * 202.30965 * 13 12 11 37 37 H 0.96995 * 120.00343 * 179.97438 * 18 17 15 38 38 H 1.08996 * 113.47157 * 87.66415 * 23 14 13 39 39 H 1.09010 * 113.46671 * 218.10257 * 23 14 13 40 40 H 1.09001 * 109.49158 * 58.58777 * 24 10 9 41 41 H 1.08998 * 109.49762 * 178.68041 * 24 10 9 42 42 H 1.08999 * 109.59217 * 246.16117 * 25 7 5 43 43 H 1.09007 * 109.58822 * 6.44336 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0322 -0.7104 1.2306 6 8 1.2878 -1.4306 1.8613 7 7 3.3088 -0.5454 1.6300 8 6 4.1976 0.3911 0.9287 9 6 5.4703 -0.3540 0.5140 10 6 6.0962 -1.0114 1.7461 11 8 7.3011 -1.6803 1.3685 12 6 8.2845 -1.7351 2.4038 13 6 9.1976 -2.9672 2.3401 14 7 10.0748 -2.2061 1.4379 15 6 10.9645 -2.5074 0.4414 16 1 11.1894 -3.5385 0.2119 17 6 11.5773 -1.4877 -0.2736 18 7 11.2018 -0.2392 -0.0927 19 14 12.9351 -1.8872 -1.4928 20 1 12.3562 -2.0144 -2.8544 21 1 13.9445 -0.7979 -1.4840 22 1 13.5841 -3.1666 -1.1093 23 6 9.5810 -0.9793 2.0812 24 6 5.1148 -2.0248 2.3393 25 6 3.8382 -1.2986 2.7750 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 4.4568 1.2157 1.5927 30 1 3.6963 0.7794 0.0422 31 1 6.1787 0.3506 0.0782 32 1 5.2205 -1.1202 -0.2199 33 1 6.3228 -0.2472 2.4897 34 1 7.8789 -1.5302 3.3946 35 1 8.7301 -3.8299 1.8653 36 1 9.6642 -3.2128 3.2941 37 1 11.6303 0.4734 -0.5921 38 1 10.1493 -0.6944 2.9666 39 1 9.4394 -0.1515 1.3862 40 1 4.8685 -2.7752 1.5881 41 1 5.5701 -2.5096 3.2029 42 1 4.0682 -0.6118 3.5895 43 1 3.0974 -2.0256 3.1082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093496399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:24 Heat of formation + Delta-G solvation = -101.923528 kcal Electronic energy + Delta-G solvation = -27827.046258 eV Core-core repulsion = 23546.051362 eV Total energy + Delta-G solvation = -4280.994897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.72262 -47.60707 -40.43917 -38.89120 -37.61172 -35.45723 -32.31653 -32.03593 -31.46844 -31.28961 -27.56200 -26.16573 -24.60838 -24.24052 -23.25863 -22.97833 -21.19489 -19.95731 -19.41300 -18.39563 -18.20157 -17.30628 -16.88602 -16.23913 -16.03859 -15.33064 -15.11651 -14.92188 -14.68816 -14.45658 -14.36392 -13.92022 -13.78846 -13.68503 -13.65404 -13.46010 -13.00677 -12.88017 -12.72346 -12.63060 -12.44641 -12.20792 -12.03239 -11.69664 -11.37786 -11.17049 -10.90803 -10.82309 -10.61008 -10.37467 -10.19960 -10.11505 -9.80250 -9.40875 -9.12183 -8.80479 -8.63206 -6.80309 -5.69480 -3.01941 1.76719 2.21228 3.21703 3.42952 3.47625 3.47998 3.49755 3.90393 3.96129 4.15543 4.50645 4.58301 4.73123 4.85839 4.99339 5.06020 5.09272 5.12561 5.25831 5.32747 5.38271 5.43753 5.45185 5.50526 5.52320 5.58716 5.70395 5.83825 5.89607 6.05802 6.22983 6.26682 6.40703 6.56909 6.59458 6.79728 6.97615 7.28724 7.39429 7.59708 7.95806 8.08916 9.09124 9.77097 10.70400 11.46848 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002940 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.433340 B = 9520.132887 C =10240.649022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.281 3.719 3 F -0.182 7.182 4 F -0.179 7.179 5 C 0.487 3.513 6 O -0.510 6.510 7 N -0.589 5.589 8 C 0.085 3.915 9 C -0.132 4.132 10 C 0.090 3.910 11 O -0.336 6.336 12 C 0.033 3.967 13 C 0.113 3.887 14 N -0.601 5.601 15 C -0.212 4.212 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.917 5.917 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.128 3.872 24 C -0.157 4.157 25 C 0.112 3.888 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.251 0.749 38 H 0.029 0.971 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.579 3.210 4.889 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.163 7.163 4 F -0.160 7.160 5 C 0.270 3.730 6 O -0.385 6.385 7 N -0.322 5.322 8 C -0.037 4.037 9 C -0.170 4.170 10 C 0.031 3.969 11 O -0.254 6.254 12 C -0.026 4.026 13 C -0.014 4.014 14 N -0.327 5.327 15 C -0.340 4.340 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.564 5.564 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.002 3.998 24 C -0.195 4.195 25 C -0.009 4.009 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.653 2.821 4.743 22.345 hybrid contribution 1.114 0.042 -0.512 1.226 sum -20.539 2.862 4.231 21.165 Atomic orbital electron populations 1.22615 0.88675 1.06782 1.05706 1.21380 0.95865 0.75572 0.83077 1.92957 1.89449 1.37234 1.96699 1.93120 1.90468 1.80652 1.51729 1.20725 0.82995 0.83185 0.86103 1.90756 1.55060 1.38051 1.54647 1.48254 1.10150 1.41837 1.31917 1.22465 0.91033 0.91450 0.98747 1.21980 0.95836 1.00929 0.98300 1.21999 0.85715 0.93201 0.95973 1.88066 1.23571 1.76619 1.37159 1.23935 0.89496 1.00732 0.88458 1.22657 0.89890 0.94738 0.94095 1.45303 1.48792 1.02400 1.36211 1.18888 1.15251 0.92548 1.07296 0.90286 1.24749 1.00596 0.95314 0.99844 1.69836 1.43596 0.98538 1.44434 0.86126 0.81637 0.77106 0.81054 1.21588 1.21678 1.20696 1.22672 0.87991 0.93700 0.95482 1.22501 0.95078 0.99500 1.02415 1.21758 0.96190 0.95886 0.87086 0.88729 0.89081 0.88114 0.90044 0.87400 0.88906 0.90506 0.92110 0.92133 0.93638 0.93937 0.93853 0.95324 0.89788 0.90570 0.89968 0.90625 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 8.82 37.16 0.33 -0.94 16 2 C 0.28 2.75 1.81 -27.88 -0.05 2.70 16 3 F -0.18 -1.74 13.96 2.25 0.03 -1.71 16 4 F -0.18 -2.01 16.91 2.25 0.04 -1.97 16 5 C 0.49 5.66 7.19 -10.98 -0.08 5.58 16 6 O -0.51 -6.88 15.44 5.56 0.09 -6.80 16 7 N -0.59 -6.55 2.97 -172.77 -0.51 -7.06 16 8 C 0.08 0.89 5.83 -3.71 -0.02 0.87 16 9 C -0.13 -1.74 5.73 -26.61 -0.15 -1.89 16 10 C 0.09 1.27 2.46 -26.69 -0.07 1.20 16 11 O -0.34 -6.51 10.04 -35.23 -0.35 -6.87 16 12 C 0.03 0.63 4.50 -26.22 -0.12 0.51 16 13 C 0.11 2.38 8.52 -8.52 -0.07 2.31 16 14 N -0.60 -16.00 3.77 -184.83 -0.70 -16.70 16 15 C -0.21 -6.18 10.73 -15.06 -0.16 -6.34 16 16 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.92 -27.70 11.44 55.49 0.63 -27.07 16 19 Si 0.91 22.62 29.56 -169.99 -5.02 17.60 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.13 3.04 7.44 -8.52 -0.06 2.98 16 24 C -0.16 -1.86 5.69 -26.61 -0.15 -2.01 16 25 C 0.11 1.16 6.42 -3.71 -0.02 1.14 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.72 7.92 -51.93 -0.41 0.31 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.11 1.09 4.60 -51.93 -0.24 0.85 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.79 7.71 -51.93 -0.40 0.39 16 34 H 0.06 0.94 7.76 -51.93 -0.40 0.53 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 2.25 6.86 -51.92 -0.36 1.89 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.02 7.03 -51.92 -0.36 0.66 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -33.88 353.63 -7.57 -41.45 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.37 Total: -1.96 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.73 Total: 5.75 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.58 Total: -50.83 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.27 Total: -13.66 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.67 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.88 -7.57 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093496399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.473 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds