Wall clock time and date at job start Fri Apr 10 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39895 * 109.47545 * 2 1 4 4 F 1.39906 * 109.47015 * 239.99443 * 2 1 3 5 5 C 1.50708 * 109.46746 * 119.99778 * 2 1 3 6 6 O 1.21275 * 119.99965 * 17.07696 * 5 2 1 7 7 N 1.34773 * 119.99778 * 197.07173 * 5 2 1 8 8 C 1.46932 * 120.63343 * 4.02657 * 7 5 2 9 9 C 1.53189 * 108.77441 * 233.62670 * 8 7 5 10 10 C 1.53037 * 109.31585 * 305.36442 * 9 8 7 11 11 O 1.42896 * 109.46217 * 181.38419 * 10 9 8 12 12 C 1.42900 * 113.99984 * 149.97094 * 11 10 9 13 13 C 1.53490 * 114.20958 * 150.00110 * 12 11 10 14 14 N 1.47064 * 87.98551 * 87.52169 * 13 12 11 15 15 C 1.36943 * 136.05871 * 206.86890 * 14 13 12 16 16 H 1.08003 * 119.99859 * 356.08174 * 15 14 13 17 17 C 1.38803 * 120.00070 * 176.08601 * 15 14 13 18 18 N 1.31617 * 120.00500 * 352.86135 * 17 15 14 19 19 Si 1.86805 * 119.99892 * 172.86324 * 17 15 14 20 20 H 1.48499 * 109.47413 * 94.95516 * 19 17 15 21 21 H 1.48507 * 109.47146 * 214.95318 * 19 17 15 22 22 H 1.48505 * 109.47205 * 334.95143 * 19 17 15 23 23 C 1.47062 * 87.88467 * 27.12389 * 14 13 12 24 24 C 1.53044 * 109.52685 * 61.36792 * 10 9 8 25 25 C 1.46922 * 120.63111 * 184.04098 * 7 5 2 26 26 H 1.09004 * 109.47191 * 300.00715 * 1 2 3 27 27 H 1.09007 * 109.46940 * 60.00202 * 1 2 3 28 28 H 1.08992 * 109.47384 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.58670 * 113.83755 * 8 7 5 30 30 H 1.08998 * 109.69798 * 353.48467 * 8 7 5 31 31 H 1.09003 * 109.49898 * 185.41136 * 9 8 7 32 32 H 1.09002 * 109.49483 * 65.31811 * 9 8 7 33 33 H 1.09004 * 109.45592 * 301.35992 * 10 9 8 34 34 H 1.09005 * 113.27961 * 16.93402 * 12 11 10 35 35 H 1.09006 * 113.46722 * 332.74170 * 13 12 11 36 36 H 1.08995 * 113.52392 * 202.30965 * 13 12 11 37 37 H 0.96995 * 120.00343 * 179.97438 * 18 17 15 38 38 H 1.08996 * 113.47157 * 87.66415 * 23 14 13 39 39 H 1.09010 * 113.46671 * 218.10257 * 23 14 13 40 40 H 1.09001 * 109.49158 * 58.58777 * 24 10 9 41 41 H 1.08998 * 109.49762 * 178.68041 * 24 10 9 42 42 H 1.08999 * 109.59217 * 246.16117 * 25 7 5 43 43 H 1.09007 * 109.58822 * 6.44336 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0322 -0.7104 1.2306 6 8 1.2878 -1.4306 1.8613 7 7 3.3088 -0.5454 1.6300 8 6 4.1976 0.3911 0.9287 9 6 5.4703 -0.3540 0.5140 10 6 6.0962 -1.0114 1.7461 11 8 7.3011 -1.6803 1.3685 12 6 8.2845 -1.7351 2.4038 13 6 9.1976 -2.9672 2.3401 14 7 10.0748 -2.2061 1.4379 15 6 10.9645 -2.5074 0.4414 16 1 11.1894 -3.5385 0.2119 17 6 11.5773 -1.4877 -0.2736 18 7 11.2018 -0.2392 -0.0927 19 14 12.9351 -1.8872 -1.4928 20 1 12.3562 -2.0144 -2.8544 21 1 13.9445 -0.7979 -1.4840 22 1 13.5841 -3.1666 -1.1093 23 6 9.5810 -0.9793 2.0812 24 6 5.1148 -2.0248 2.3393 25 6 3.8382 -1.2986 2.7750 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 4.4568 1.2157 1.5927 30 1 3.6963 0.7794 0.0422 31 1 6.1787 0.3506 0.0782 32 1 5.2205 -1.1202 -0.2199 33 1 6.3228 -0.2472 2.4897 34 1 7.8789 -1.5302 3.3946 35 1 8.7301 -3.8299 1.8653 36 1 9.6642 -3.2128 3.2941 37 1 11.6303 0.4734 -0.5921 38 1 10.1493 -0.6944 2.9666 39 1 9.4394 -0.1515 1.3862 40 1 4.8685 -2.7752 1.5881 41 1 5.5701 -2.5096 3.2029 42 1 4.0682 -0.6118 3.5895 43 1 3.0974 -2.0256 3.1082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093496399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:24 Heat of formation + Delta-G solvation = -124.050888 kcal Electronic energy + Delta-G solvation = -27828.005773 eV Core-core repulsion = 23546.051362 eV Total energy + Delta-G solvation = -4281.954411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.50930 -48.40783 -41.38272 -40.33999 -38.85186 -36.82959 -34.17680 -33.04122 -32.53691 -32.16833 -29.54787 -27.04450 -26.35171 -25.42984 -24.71134 -24.13836 -22.13544 -21.17907 -20.82254 -19.28726 -18.99326 -18.81427 -18.13950 -17.54911 -17.03494 -16.93347 -16.27175 -15.98795 -15.96181 -15.65569 -15.51731 -15.20994 -15.12516 -14.70348 -14.67447 -14.55640 -14.34879 -13.94928 -13.61843 -13.53525 -13.44306 -13.30092 -13.22797 -13.04279 -12.82656 -12.69352 -12.47234 -12.31725 -12.21519 -11.81045 -11.69285 -11.53311 -11.19669 -11.06620 -10.91564 -10.15957 -10.01641 -8.87168 -7.87241 -5.20579 0.87430 1.39465 1.43976 1.46198 1.55149 2.39204 2.47965 2.66366 2.76931 3.21965 3.32102 3.42233 3.51496 3.65401 3.69537 3.89388 3.93405 4.07867 4.20968 4.24376 4.33071 4.45009 4.50110 4.56599 4.59212 4.67983 4.71170 4.78319 4.84862 4.89568 4.94453 4.97252 5.07522 5.15639 5.23288 5.27625 5.36992 5.54058 5.91195 5.99362 6.51175 6.60206 6.92940 7.62607 8.64057 9.28670 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002940 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.433340 B = 9520.132887 C =10240.649022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.279 3.721 3 F -0.180 7.180 4 F -0.190 7.190 5 C 0.483 3.517 6 O -0.531 6.531 7 N -0.592 5.592 8 C 0.094 3.906 9 C -0.130 4.130 10 C 0.083 3.917 11 O -0.372 6.372 12 C 0.063 3.937 13 C 0.111 3.889 14 N -0.639 5.639 15 C -0.228 4.228 16 H 0.079 0.921 17 C -0.068 4.068 18 N -0.948 5.948 19 Si 0.977 3.023 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.120 3.880 24 C -0.146 4.146 25 C 0.115 3.885 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.247 0.753 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.723 3.256 6.095 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.239 3.761 3 F -0.161 7.161 4 F -0.171 7.171 5 C 0.266 3.734 6 O -0.408 6.408 7 N -0.324 5.324 8 C -0.028 4.028 9 C -0.168 4.168 10 C 0.025 3.975 11 O -0.290 6.290 12 C 0.005 3.995 13 C -0.015 4.015 14 N -0.365 5.365 15 C -0.356 4.356 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.596 5.596 19 Si 0.805 3.195 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.194 1.194 23 C -0.006 4.006 24 C -0.184 4.184 25 C -0.007 4.007 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.817 2.847 5.972 23.757 hybrid contribution 1.436 0.006 -0.868 1.678 sum -21.381 2.853 5.104 22.166 Atomic orbital electron populations 1.22671 0.86400 1.07142 1.07211 1.21542 0.97345 0.75275 0.81896 1.92957 1.89584 1.36946 1.96618 1.93100 1.90778 1.80970 1.52229 1.21050 0.82976 0.82951 0.86405 1.90743 1.55621 1.38977 1.55454 1.48377 1.10154 1.41803 1.32051 1.22441 0.89502 0.91333 0.99514 1.21938 0.96850 1.00266 0.97780 1.22295 0.84381 0.94014 0.96774 1.88033 1.25236 1.77286 1.38482 1.23622 0.88074 0.97415 0.90412 1.22898 0.89436 0.95159 0.93968 1.45696 1.49071 1.04894 1.36850 1.19264 1.15546 0.92703 1.08119 0.90336 1.25602 1.03092 0.95305 1.02115 1.70030 1.44731 0.99248 1.45638 0.85084 0.78665 0.77181 0.78528 1.21502 1.21741 1.19369 1.22747 0.91046 0.92292 0.94511 1.22386 0.95274 0.98545 1.02228 1.21819 0.95135 0.96321 0.87389 0.87718 0.87125 0.88315 0.87799 0.87060 0.90297 0.92502 0.90168 0.87052 0.93898 0.91129 0.94433 0.94776 0.93670 0.92592 0.88405 0.88055 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 8.82 71.98 0.63 -1.55 16 2 C 0.28 5.09 1.81 29.85 0.05 5.15 16 3 F -0.18 -3.13 13.96 44.97 0.63 -2.50 16 4 F -0.19 -4.14 16.91 44.97 0.76 -3.38 16 5 C 0.48 10.56 7.19 87.66 0.63 11.19 16 6 O -0.53 -13.68 15.44 -3.01 -0.05 -13.73 16 7 N -0.59 -12.10 2.97 -818.90 -2.43 -14.53 16 8 C 0.09 1.82 5.83 86.36 0.50 2.32 16 9 C -0.13 -3.38 5.73 30.67 0.18 -3.20 16 10 C 0.08 2.21 2.46 30.62 0.08 2.29 16 11 O -0.37 -14.14 10.04 -148.98 -1.50 -15.64 16 12 C 0.06 2.31 4.50 30.93 0.14 2.45 16 13 C 0.11 4.50 8.52 83.17 0.71 5.21 16 14 N -0.64 -34.16 3.77 -739.17 -2.79 -36.95 16 15 C -0.23 -13.44 10.73 84.03 0.90 -12.54 16 16 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 18 N -0.95 -58.79 11.44 21.65 0.25 -58.54 16 19 Si 0.98 47.24 29.56 68.60 2.03 49.27 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 C 0.12 5.72 7.44 83.17 0.62 6.34 16 24 C -0.15 -3.17 5.69 30.67 0.17 -3.00 16 25 C 0.11 2.08 6.42 86.36 0.55 2.64 16 26 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.10 1.28 7.92 -2.39 -0.02 1.26 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 2.11 4.60 -2.39 -0.01 2.10 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.84 7.71 -2.39 -0.02 1.82 16 34 H 0.11 2.95 7.76 -2.38 -0.02 2.93 16 35 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.04 2.49 6.86 -2.38 -0.02 2.47 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.82 7.03 -2.38 -0.02 1.80 16 Total: -1.00 -75.05 353.63 3.55 -71.50 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.01 Total: 10.76 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 5.64 Total: 13.73 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -4.97 Total: -110.02 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.54 Total: -29.36 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 1.39 Total: -5.88 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -75.05 3.55 -71.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093496399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.550 kcal (2) G-P(sol) polarization free energy of solvation -75.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds