Wall clock time and date at job start Fri Apr 10 2020 18:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.55365 * 2 1 4 4 N 1.46506 * 109.47231 * 304.87595 * 3 2 1 5 5 C 1.34775 * 120.00081 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00003 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00094 * 179.97438 * 5 4 3 8 8 C 1.53788 * 113.61649 * 279.13823 * 7 5 4 9 9 C 1.53952 * 87.01835 * 220.04736 * 8 7 5 10 10 F 1.39895 * 113.53523 * 270.80580 * 9 8 7 11 11 F 1.39897 * 113.66541 * 139.93265 * 9 8 7 12 12 C 1.53775 * 113.61667 * 181.52883 * 7 5 4 13 13 C 1.53297 * 109.51487 * 120.12758 * 2 1 3 14 14 N 1.47162 * 108.41323 * 67.64361 * 13 2 1 15 15 C 1.36936 * 120.99426 * 230.54566 * 14 13 2 16 16 H 1.07993 * 120.00254 * 153.33118 * 15 14 13 17 17 C 1.38816 * 119.99594 * 333.33831 * 15 14 13 18 18 N 1.31616 * 120.00208 * 343.51894 * 17 15 14 19 19 Si 1.86797 * 119.99898 * 163.52381 * 17 15 14 20 20 H 1.48494 * 109.47385 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47024 * 119.99750 * 19 17 15 22 22 H 1.48498 * 109.47173 * 239.99607 * 19 17 15 23 23 C 1.47156 * 118.02918 * 50.46999 * 14 13 2 24 24 C 1.53293 * 108.41370 * 309.52999 * 23 14 13 25 25 O 1.42958 * 109.51058 * 239.87471 * 2 1 3 26 26 H 1.09004 * 109.47102 * 180.12966 * 1 2 3 27 27 H 1.09008 * 109.47205 * 300.12363 * 1 2 3 28 28 H 1.08994 * 109.47524 * 60.12736 * 1 2 3 29 29 H 1.09003 * 109.47290 * 64.87266 * 3 2 1 30 30 H 1.09005 * 109.47354 * 184.87315 * 3 2 1 31 31 H 0.97002 * 119.99693 * 359.97438 * 4 3 2 32 32 H 1.09001 * 112.84973 * 50.33000 * 7 5 4 33 33 H 1.08997 * 113.61089 * 334.56889 * 8 7 5 34 34 H 1.09000 * 113.61164 * 105.46606 * 8 7 5 35 35 H 1.08997 * 113.61934 * 254.53241 * 12 7 5 36 36 H 1.09001 * 113.61550 * 25.43367 * 12 7 5 37 37 H 1.09001 * 109.67946 * 187.34825 * 13 2 1 38 38 H 1.08998 * 109.68018 * 307.89525 * 13 2 1 39 39 H 0.96998 * 120.00577 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.68193 * 189.79012 * 23 14 13 41 41 H 1.09004 * 109.68072 * 69.27006 * 23 14 13 42 42 H 1.09003 * 109.51304 * 172.20459 * 24 23 14 43 43 H 1.08999 * 109.51286 * 292.30582 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4612 2.1663 -1.1332 5 6 1.7716 3.4622 -1.3349 6 8 2.5321 4.0285 -0.5786 7 6 1.1746 4.2073 -2.5008 8 6 1.8961 3.9459 -3.8336 9 6 1.7129 5.4446 -4.1343 10 9 0.5120 5.7405 -4.7881 11 9 2.8248 6.0349 -4.7445 12 6 1.6564 5.6634 -2.6132 13 6 2.0420 -0.7252 1.2497 14 7 1.6967 -2.1511 1.1340 15 6 1.0621 -2.8080 2.1542 16 1 0.4438 -3.6674 1.9410 17 6 1.2134 -2.3692 3.4624 18 7 2.1956 -1.5496 3.7722 19 14 0.0232 -2.9419 4.7832 20 1 -0.9839 -3.8520 4.1812 21 1 0.7709 -3.6629 5.8445 22 1 -0.6640 -1.7655 5.3741 23 6 2.0521 -2.8498 -0.1114 24 6 1.5396 -2.0210 -1.2948 25 8 2.0074 -0.6763 -1.1655 26 1 -0.3633 -1.0277 0.0023 27 1 -0.3634 0.5158 0.8889 28 1 -0.3634 0.5118 -0.8911 29 1 1.7524 1.9302 0.9304 30 1 3.1286 1.4415 -0.0873 31 1 0.8533 1.7133 -1.7382 32 1 0.0917 4.0998 -2.5622 33 1 2.9379 3.6485 -3.7150 34 1 1.3427 3.2933 -4.5088 35 1 0.9100 6.3953 -2.3048 36 1 2.6327 5.8365 -2.1604 37 1 3.1241 -0.6147 1.3207 38 1 1.5705 -0.3041 2.1376 39 1 2.3016 -1.2432 4.6864 40 1 1.5872 -3.8355 -0.1249 41 1 3.1352 -2.9537 -0.1778 42 1 1.9113 -2.4478 -2.2264 43 1 0.4496 -2.0292 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107856682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:05 Heat of formation + Delta-G solvation = -132.910682 kcal Electronic energy + Delta-G solvation = -27738.746779 eV Core-core repulsion = 23456.408178 eV Total energy + Delta-G solvation = -4282.338601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.10320 -47.43399 -40.27982 -39.07537 -37.08594 -35.01487 -34.39425 -31.81365 -31.30396 -28.02886 -27.40896 -26.60497 -26.19791 -24.85461 -23.28667 -21.66929 -20.96866 -20.01986 -18.84192 -18.25666 -17.16329 -17.03255 -16.67809 -16.45845 -15.93870 -15.51396 -15.41684 -14.90929 -14.43018 -14.34793 -14.29755 -14.02817 -13.89697 -13.70653 -13.56462 -13.12581 -12.99626 -12.81313 -12.60646 -12.21279 -12.03075 -11.80797 -11.69070 -11.64114 -11.24823 -11.07346 -10.88489 -10.79377 -10.71308 -10.36950 -10.27872 -10.07470 -9.86934 -9.59351 -9.10691 -8.94450 -8.59326 -6.78986 -5.89537 -3.33460 2.51254 3.02616 3.20141 3.29989 3.38239 3.39800 3.45604 3.89896 3.99315 4.12720 4.20764 4.39153 4.84793 4.91906 5.06919 5.08793 5.12255 5.23522 5.29120 5.38252 5.40897 5.45752 5.60238 5.77066 5.85730 5.87675 5.94365 6.02193 6.07383 6.24124 6.38052 6.49651 6.60608 6.69137 6.76700 7.01249 7.40545 7.53683 7.66562 7.81575 8.20642 8.28096 9.05822 9.68722 10.25862 11.18504 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.002851 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.189441 B = 9820.094362 C =10279.181332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.138 3.862 4 N -0.712 5.712 5 C 0.523 3.477 6 O -0.539 6.539 7 C -0.133 4.133 8 C -0.148 4.148 9 C 0.254 3.746 10 F -0.179 7.179 11 F -0.188 7.188 12 C -0.141 4.141 13 C 0.160 3.840 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.384 6.384 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.403 0.597 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.030 0.970 38 H 0.096 0.904 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 10.031 -14.978 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.014 3.986 4 N -0.363 5.363 5 C 0.307 3.693 6 O -0.416 6.416 7 C -0.155 4.155 8 C -0.187 4.187 9 C 0.217 3.783 10 F -0.160 7.160 11 F -0.169 7.169 12 C -0.179 4.179 13 C 0.033 3.967 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C -0.018 4.018 24 C -0.032 4.032 25 O -0.304 6.304 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.238 0.762 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.048 0.952 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.098 0.902 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.089 10.564 -14.400 18.125 hybrid contribution -1.065 -0.634 0.476 1.328 sum -4.154 9.930 -13.925 17.600 Atomic orbital electron populations 1.22206 0.95761 1.03324 1.00653 1.22551 0.93565 0.90630 0.89597 1.21390 0.98883 0.89511 0.88766 1.46021 1.48745 1.10799 1.30778 1.19974 0.81569 0.82156 0.85569 1.90725 1.36032 1.67883 1.46955 1.22551 1.02205 0.96509 0.94207 1.24057 1.04549 0.94007 0.96037 1.22060 0.72200 0.94530 0.89468 1.93022 1.45177 1.94449 1.83365 1.93023 1.52131 1.86018 1.85711 1.23983 1.06304 0.96606 0.90999 1.21287 0.97848 0.83964 0.93565 1.44004 1.68677 1.04936 1.13837 1.19192 1.21404 1.12479 0.85305 0.91376 1.25055 0.97265 1.00042 0.97148 1.70013 1.29186 1.36837 1.18476 0.86220 0.80654 0.78066 0.81818 1.20243 1.21614 1.21451 1.21599 0.97578 0.95236 0.87337 1.23038 0.98301 0.83089 0.98761 1.87815 1.72938 1.25857 1.43793 0.90736 0.91834 0.93984 0.89866 0.90706 0.76179 0.85638 0.86357 0.87885 0.88289 0.85539 0.95240 0.88573 0.93444 0.92032 0.95641 0.90164 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 7.86 37.15 0.29 -2.29 16 2 C 0.08 1.36 0.78 -90.47 -0.07 1.29 16 3 C 0.14 2.21 4.85 -4.04 -0.02 2.19 16 4 N -0.71 -9.07 5.19 -60.29 -0.31 -9.38 16 5 C 0.52 6.63 7.35 -10.99 -0.08 6.55 16 6 O -0.54 -8.92 15.91 5.55 0.09 -8.83 16 7 C -0.13 -1.17 4.12 -90.96 -0.37 -1.55 16 8 C -0.15 -1.18 7.43 -25.82 -0.19 -1.37 16 9 C 0.25 2.32 3.28 -25.83 -0.08 2.23 16 10 F -0.18 -1.76 17.38 2.25 0.04 -1.72 16 11 F -0.19 -2.03 17.41 2.25 0.04 -1.99 16 12 C -0.14 -1.24 7.18 -25.92 -0.19 -1.43 16 13 C 0.16 3.60 4.11 -3.53 -0.01 3.58 16 14 N -0.59 -13.98 2.57 -171.82 -0.44 -14.42 16 15 C -0.25 -6.61 9.65 -15.06 -0.15 -6.76 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 18 N -0.90 -25.17 11.14 55.49 0.62 -24.55 16 19 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.11 2.16 6.73 -3.53 -0.02 2.14 16 24 C 0.05 0.76 6.60 37.31 0.25 1.00 16 25 O -0.38 -6.69 10.17 -35.23 -0.36 -7.05 16 26 H 0.07 1.32 6.12 -51.93 -0.32 1.00 16 27 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 28 H 0.04 0.54 6.59 -51.93 -0.34 0.20 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.40 4.37 7.00 -40.82 -0.29 4.08 16 32 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.12 0.98 8.09 -51.93 -0.42 0.56 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.13 1.26 7.45 -51.93 -0.39 0.87 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.76 6.26 -51.93 -0.32 0.44 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -30.39 350.68 -6.98 -37.37 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.16 Total: 3.87 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.74 Total: 5.60 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.14 Total: -48.36 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.27 Total: -15.88 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.08 Total: -3.72 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.39 -6.98 -37.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107856682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.545 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds