Wall clock time and date at job start Fri Apr 10 2020 18:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.55365 * 2 1 4 4 N 1.46506 * 109.47231 * 304.87595 * 3 2 1 5 5 C 1.34775 * 120.00081 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00003 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00094 * 179.97438 * 5 4 3 8 8 C 1.53788 * 113.61649 * 279.13823 * 7 5 4 9 9 C 1.53952 * 87.01835 * 220.04736 * 8 7 5 10 10 F 1.39895 * 113.53523 * 270.80580 * 9 8 7 11 11 F 1.39897 * 113.66541 * 139.93265 * 9 8 7 12 12 C 1.53775 * 113.61667 * 181.52883 * 7 5 4 13 13 C 1.53297 * 109.51487 * 120.12758 * 2 1 3 14 14 N 1.47162 * 108.41323 * 67.64361 * 13 2 1 15 15 C 1.36936 * 120.99426 * 230.54566 * 14 13 2 16 16 H 1.07993 * 120.00254 * 153.33118 * 15 14 13 17 17 C 1.38816 * 119.99594 * 333.33831 * 15 14 13 18 18 N 1.31616 * 120.00208 * 343.51894 * 17 15 14 19 19 Si 1.86797 * 119.99898 * 163.52381 * 17 15 14 20 20 H 1.48494 * 109.47385 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47024 * 119.99750 * 19 17 15 22 22 H 1.48498 * 109.47173 * 239.99607 * 19 17 15 23 23 C 1.47156 * 118.02918 * 50.46999 * 14 13 2 24 24 C 1.53293 * 108.41370 * 309.52999 * 23 14 13 25 25 O 1.42958 * 109.51058 * 239.87471 * 2 1 3 26 26 H 1.09004 * 109.47102 * 180.12966 * 1 2 3 27 27 H 1.09008 * 109.47205 * 300.12363 * 1 2 3 28 28 H 1.08994 * 109.47524 * 60.12736 * 1 2 3 29 29 H 1.09003 * 109.47290 * 64.87266 * 3 2 1 30 30 H 1.09005 * 109.47354 * 184.87315 * 3 2 1 31 31 H 0.97002 * 119.99693 * 359.97438 * 4 3 2 32 32 H 1.09001 * 112.84973 * 50.33000 * 7 5 4 33 33 H 1.08997 * 113.61089 * 334.56889 * 8 7 5 34 34 H 1.09000 * 113.61164 * 105.46606 * 8 7 5 35 35 H 1.08997 * 113.61934 * 254.53241 * 12 7 5 36 36 H 1.09001 * 113.61550 * 25.43367 * 12 7 5 37 37 H 1.09001 * 109.67946 * 187.34825 * 13 2 1 38 38 H 1.08998 * 109.68018 * 307.89525 * 13 2 1 39 39 H 0.96998 * 120.00577 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.68193 * 189.79012 * 23 14 13 41 41 H 1.09004 * 109.68072 * 69.27006 * 23 14 13 42 42 H 1.09003 * 109.51304 * 172.20459 * 24 23 14 43 43 H 1.08999 * 109.51286 * 292.30582 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4612 2.1663 -1.1332 5 6 1.7716 3.4622 -1.3349 6 8 2.5321 4.0285 -0.5786 7 6 1.1746 4.2073 -2.5008 8 6 1.8961 3.9459 -3.8336 9 6 1.7129 5.4446 -4.1343 10 9 0.5120 5.7405 -4.7881 11 9 2.8248 6.0349 -4.7445 12 6 1.6564 5.6634 -2.6132 13 6 2.0420 -0.7252 1.2497 14 7 1.6967 -2.1511 1.1340 15 6 1.0621 -2.8080 2.1542 16 1 0.4438 -3.6674 1.9410 17 6 1.2134 -2.3692 3.4624 18 7 2.1956 -1.5496 3.7722 19 14 0.0232 -2.9419 4.7832 20 1 -0.9839 -3.8520 4.1812 21 1 0.7709 -3.6629 5.8445 22 1 -0.6640 -1.7655 5.3741 23 6 2.0521 -2.8498 -0.1114 24 6 1.5396 -2.0210 -1.2948 25 8 2.0074 -0.6763 -1.1655 26 1 -0.3633 -1.0277 0.0023 27 1 -0.3634 0.5158 0.8889 28 1 -0.3634 0.5118 -0.8911 29 1 1.7524 1.9302 0.9304 30 1 3.1286 1.4415 -0.0873 31 1 0.8533 1.7133 -1.7382 32 1 0.0917 4.0998 -2.5622 33 1 2.9379 3.6485 -3.7150 34 1 1.3427 3.2933 -4.5088 35 1 0.9100 6.3953 -2.3048 36 1 2.6327 5.8365 -2.1604 37 1 3.1241 -0.6147 1.3207 38 1 1.5705 -0.3041 2.1376 39 1 2.3016 -1.2432 4.6864 40 1 1.5872 -3.8355 -0.1249 41 1 3.1352 -2.9537 -0.1778 42 1 1.9113 -2.4478 -2.2264 43 1 0.4496 -2.0292 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107856682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:04 Heat of formation + Delta-G solvation = -152.706218 kcal Electronic energy + Delta-G solvation = -27739.605178 eV Core-core repulsion = 23456.408178 eV Total energy + Delta-G solvation = -4283.196999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.84284 -48.18863 -41.36388 -40.45121 -37.96326 -36.51749 -35.92331 -33.25675 -33.10548 -29.57943 -28.52290 -27.86641 -27.25494 -26.05157 -24.97196 -23.02264 -22.10998 -20.92489 -20.25989 -19.21749 -18.89635 -17.85223 -17.56416 -17.36310 -17.21823 -16.93368 -16.64748 -16.23499 -15.92891 -15.63367 -15.38577 -15.18665 -15.06005 -15.01134 -14.65166 -14.48106 -14.40849 -13.95682 -13.63397 -13.42219 -13.19233 -13.03517 -12.91058 -12.80981 -12.56713 -12.48344 -12.42949 -12.41844 -12.10960 -11.93495 -11.83475 -11.45277 -11.15483 -10.94120 -10.72850 -10.49619 -10.12698 -8.70898 -7.89587 -5.36718 1.45276 1.48030 1.52331 1.57683 2.05198 2.44598 2.48771 2.75760 2.80347 3.19198 3.25056 3.27722 3.42103 3.52024 3.89334 4.02403 4.05857 4.12217 4.28984 4.39308 4.44208 4.47830 4.48379 4.58492 4.64097 4.67653 4.73213 4.74004 4.81300 4.98502 5.06289 5.09411 5.14097 5.22407 5.37912 5.38363 5.54839 5.62346 6.30039 6.38346 6.53497 7.07560 7.20679 7.76706 8.30505 9.16070 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.002851 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.189441 B = 9820.094362 C =10279.181332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 C 0.148 3.852 4 N -0.701 5.701 5 C 0.523 3.477 6 O -0.582 6.582 7 C -0.122 4.122 8 C -0.140 4.140 9 C 0.252 3.748 10 F -0.181 7.181 11 F -0.200 7.200 12 C -0.143 4.143 13 C 0.167 3.833 14 N -0.608 5.608 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.263 1.263 21 H -0.296 1.296 22 H -0.290 1.290 23 C 0.101 3.899 24 C 0.053 3.947 25 O -0.384 6.384 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.416 0.584 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.111 0.889 37 H -0.009 1.009 38 H 0.066 0.934 39 H 0.250 0.750 40 H 0.071 0.929 41 H 0.011 0.989 42 H 0.118 0.882 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 9.882 -17.342 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 C 0.023 3.977 4 N -0.353 5.353 5 C 0.310 3.690 6 O -0.462 6.462 7 C -0.143 4.143 8 C -0.178 4.178 9 C 0.216 3.784 10 F -0.162 7.162 11 F -0.181 7.181 12 C -0.182 4.182 13 C 0.040 3.960 14 N -0.332 5.332 15 C -0.387 4.387 16 H 0.091 0.909 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.223 1.223 22 H -0.217 1.217 23 C -0.024 4.024 24 C -0.024 4.024 25 O -0.304 6.304 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.254 0.746 32 H 0.175 0.825 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.009 0.991 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.135 0.865 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.301 10.394 -16.825 20.474 hybrid contribution -0.308 -0.627 1.181 1.372 sum -5.609 9.767 -15.643 19.276 Atomic orbital electron populations 1.22116 0.93821 1.02896 1.02260 1.22182 0.94757 0.90589 0.87242 1.21014 0.97874 0.89040 0.89750 1.45830 1.48694 1.10859 1.29914 1.20639 0.80646 0.81756 0.85946 1.90718 1.37959 1.68693 1.48796 1.22591 1.03708 0.95507 0.92501 1.24059 1.04589 0.93511 0.95635 1.22136 0.71746 0.95301 0.89216 1.93020 1.45194 1.94552 1.83410 1.93000 1.52862 1.86341 1.85918 1.23992 1.06049 0.97251 0.90887 1.21061 0.95343 0.84361 0.95201 1.44267 1.68669 1.05610 1.14650 1.19530 1.20898 1.12260 0.86025 0.90895 1.25793 0.98772 1.00758 0.99212 1.70181 1.31067 1.38586 1.18398 0.85232 0.78808 0.77511 0.79060 1.18726 1.22340 1.21687 1.21827 0.96981 0.96389 0.87245 1.23099 0.99158 0.81788 0.98369 1.87828 1.73278 1.26400 1.42860 0.92102 0.92620 0.89973 0.91039 0.92623 0.74554 0.82463 0.86898 0.85310 0.86869 0.87070 0.99106 0.91586 0.94097 0.91066 0.97103 0.86450 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 7.86 71.98 0.57 -4.01 16 2 C 0.09 3.22 0.78 -10.70 -0.01 3.21 16 3 C 0.15 4.74 4.85 86.38 0.42 5.16 16 4 N -0.70 -16.42 5.19 -463.04 -2.40 -18.82 16 5 C 0.52 12.43 7.35 87.66 0.64 13.08 16 6 O -0.58 -19.25 15.91 -3.04 -0.05 -19.30 16 7 C -0.12 -1.79 4.12 -11.02 -0.05 -1.83 16 8 C -0.14 -1.80 7.43 31.18 0.23 -1.56 16 9 C 0.25 4.04 3.28 31.18 0.10 4.14 16 10 F -0.18 -3.05 17.38 44.97 0.78 -2.26 16 11 F -0.20 -4.08 17.41 44.97 0.78 -3.29 16 12 C -0.14 -2.28 7.18 31.12 0.22 -2.06 16 13 C 0.17 7.79 4.11 86.35 0.35 8.14 16 14 N -0.61 -29.07 2.57 -697.51 -1.79 -30.86 16 15 C -0.26 -13.45 9.65 84.03 0.81 -12.64 16 16 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 17 C -0.05 -2.70 4.95 84.86 0.42 -2.28 16 18 N -0.94 -54.39 11.14 21.65 0.24 -54.15 16 19 Si 0.97 43.45 29.58 68.60 2.03 45.48 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 C 0.10 3.92 6.73 86.35 0.58 4.50 16 24 C 0.05 1.59 6.60 72.08 0.48 2.06 16 25 O -0.38 -12.56 10.17 -148.98 -1.52 -14.07 16 26 H 0.06 2.01 6.12 -2.39 -0.01 2.00 16 27 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.08 1.78 6.59 -2.39 -0.02 1.76 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.42 7.44 7.00 -92.71 -0.65 6.79 16 32 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.63 8.09 -2.39 -0.02 1.61 16 34 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 2.17 7.45 -2.39 -0.02 2.15 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.07 3.46 6.16 -2.39 -0.01 3.45 16 39 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 41 H 0.01 0.45 8.14 -2.38 -0.02 0.44 16 42 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.06 1.73 6.26 -2.39 -0.01 1.72 16 Total: -1.00 -68.54 350.68 3.24 -65.30 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.39 Total: 16.07 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 4.78 Total: 15.91 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -3.95 Total: -103.83 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.56 Total: -33.37 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.56 Total: -5.56 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.54 3.24 -65.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107856682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.406 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds