Wall clock time and date at job start Fri Apr 10 2020 18:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21645 * 119.99990 * 359.97438 * 5 4 3 7 7 C 1.47063 * 119.99919 * 179.97438 * 5 4 3 8 8 C 1.37999 * 125.91769 * 179.69251 * 7 5 4 9 9 C 1.39361 * 107.48594 * 179.90715 * 8 7 5 10 10 C 1.38074 * 107.51161 * 0.35608 * 9 8 7 11 11 C 1.43198 * 125.89219 * 179.81406 * 10 9 8 12 12 N 8.29308 * 68.03086 * 304.89849 * 2 1 3 13 13 N 1.36719 * 108.21246 * 359.78217 * 10 9 8 14 14 H 0.97006 * 125.68315 * 180.02562 * 13 10 9 15 15 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 16 16 N 1.47166 * 108.41716 * 67.64184 * 15 2 1 17 17 C 1.36933 * 120.99120 * 230.54983 * 16 15 2 18 18 H 1.08000 * 120.00180 * 153.70650 * 17 16 15 19 19 C 1.38813 * 120.00094 * 333.70170 * 17 16 15 20 20 N 1.31620 * 119.99900 * 160.02568 * 19 17 16 21 21 Si 1.86798 * 119.99867 * 340.02586 * 19 17 16 22 22 H 1.48500 * 109.46937 * 91.85831 * 21 19 17 23 23 H 1.48502 * 109.47208 * 211.85857 * 21 19 17 24 24 H 1.48499 * 109.47296 * 331.85455 * 21 19 17 25 25 C 1.47155 * 118.02599 * 50.46688 * 16 15 2 26 26 C 1.53300 * 108.41547 * 309.53664 * 25 16 15 27 27 O 1.42958 * 109.22465 * 52.28134 * 26 25 16 28 28 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 29 29 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 30 30 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 31 31 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 32 32 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 33 33 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 34 34 H 1.08004 * 126.25717 * 0.03322 * 8 7 5 35 35 H 1.07994 * 126.23847 * 180.10580 * 9 8 7 36 36 H 1.09003 * 109.68354 * 187.34399 * 15 2 1 37 37 H 1.09005 * 109.68141 * 307.89260 * 15 2 1 38 38 H 0.96999 * 119.99776 * 179.97438 * 20 19 17 39 39 H 1.08995 * 109.68037 * 189.78791 * 25 16 15 40 40 H 1.09003 * 109.67969 * 69.27666 * 25 16 15 41 41 H 1.09000 * 109.50966 * 172.20794 * 26 25 16 42 42 H 1.09003 * 109.50501 * 292.30491 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5338 4.0303 -0.5758 7 6 1.1891 4.1893 -2.4727 8 6 1.4167 5.5130 -2.7896 9 6 0.6784 5.8020 -3.9357 10 6 0.0047 4.6522 -4.2969 11 6 -0.8736 4.5113 -5.4191 12 7 -1.5726 4.4001 -6.3078 13 7 0.3214 3.6714 -3.3987 14 1 -0.0121 2.7606 -3.4145 15 6 2.0420 -0.7252 1.2496 16 7 1.6967 -2.1511 1.1339 17 6 1.0620 -2.8079 2.1542 18 1 0.4485 -3.6710 1.9417 19 6 1.2071 -2.3645 3.4615 20 7 0.3278 -2.7139 4.3764 21 14 2.6505 -1.2719 3.9223 22 1 2.2554 0.1532 3.7873 23 1 3.0489 -1.5442 5.3267 24 1 3.7946 -1.5561 3.0193 25 6 2.0520 -2.8498 -0.1115 26 6 1.5395 -2.0209 -1.2949 27 8 2.0074 -0.6763 -1.1656 28 1 -0.3634 -1.0277 0.0023 29 1 -0.3634 0.5158 0.8889 30 1 -0.3634 0.5119 -0.8910 31 1 1.7525 1.9302 0.9304 32 1 3.1285 1.4414 -0.0873 33 1 0.8533 1.7132 -1.7382 34 1 2.0524 6.1990 -2.2494 35 1 0.6374 6.7531 -4.4457 36 1 3.1241 -0.6148 1.3207 37 1 1.5704 -0.3041 2.1376 38 1 0.4294 -2.4043 5.2901 39 1 1.5871 -3.8355 -0.1249 40 1 3.1350 -2.9538 -0.1778 41 1 1.9112 -2.4478 -2.2264 42 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107877633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:12 Heat of formation + Delta-G solvation = 8.607386 kcal Electronic energy + Delta-G solvation = -26605.265212 eV Core-core repulsion = 22779.752482 eV Total energy + Delta-G solvation = -3825.512730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.50203 -41.11842 -39.99272 -37.61833 -36.73698 -36.09058 -33.65609 -33.51170 -32.23029 -31.01285 -29.97348 -28.20496 -27.46747 -25.32831 -24.77529 -22.88889 -22.14904 -21.41797 -20.97861 -20.50131 -19.04862 -18.68813 -17.70790 -17.17027 -16.91415 -16.45514 -16.27040 -15.98607 -15.75673 -15.56724 -15.51433 -15.41727 -14.92385 -14.56380 -14.39689 -14.28360 -14.18322 -13.96586 -13.81862 -13.73703 -13.49665 -13.28756 -13.10260 -13.04802 -12.71570 -12.38905 -12.23381 -12.01290 -11.64192 -11.43561 -11.21752 -11.06460 -10.50692 -10.31586 -10.16822 -9.39460 -8.95949 -8.20454 -5.53047 -0.11287 1.11922 1.12580 1.25251 1.39326 1.45530 1.88279 2.02664 2.24922 2.36248 2.36381 2.64371 2.90172 2.97932 3.21891 3.65374 3.76243 3.82877 3.88908 4.12962 4.25275 4.28819 4.39478 4.44090 4.51372 4.58210 4.63613 4.69729 4.79899 4.84665 4.85942 5.03056 5.11402 5.12934 5.18246 5.34038 5.43949 5.70578 5.77884 6.04130 6.07977 6.20965 6.29328 6.40367 6.81218 7.00914 7.53711 7.94400 8.98829 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.003189 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.395061 B = 8777.454942 C = 9490.543855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 C 0.142 3.858 4 N -0.705 5.705 5 C 0.586 3.414 6 O -0.560 6.560 7 C -0.009 4.009 8 C -0.116 4.116 9 C -0.111 4.111 10 C 0.091 3.909 11 C 0.300 3.700 12 N -0.436 5.436 13 N -0.505 5.505 14 H 0.433 0.567 15 C 0.101 3.899 16 N -0.616 5.616 17 C -0.243 4.243 18 H 0.061 0.939 19 C -0.028 4.028 20 N -0.952 5.952 21 Si 0.932 3.068 22 H -0.270 1.270 23 H -0.312 1.312 24 H -0.266 1.266 25 C 0.104 3.896 26 C 0.050 3.950 27 O -0.376 6.376 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.410 0.590 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.124 0.876 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 14.479 -18.249 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 C 0.017 3.983 4 N -0.357 5.357 5 C 0.373 3.627 6 O -0.438 6.438 7 C -0.127 4.127 8 C -0.142 4.142 9 C -0.139 4.139 10 C -0.027 4.027 11 C -0.015 4.015 12 N -0.113 5.113 13 N -0.103 5.103 14 H 0.274 0.726 15 C -0.025 4.025 16 N -0.341 5.341 17 C -0.372 4.372 18 H 0.078 0.922 19 C -0.224 4.224 20 N -0.598 5.598 21 Si 0.762 3.238 22 H -0.196 1.196 23 H -0.241 1.241 24 H -0.191 1.191 25 C -0.021 4.021 26 C -0.027 4.027 27 O -0.295 6.295 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.247 0.753 34 H 0.184 0.816 35 H 0.202 0.798 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.142 0.858 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.510 14.541 -19.023 23.949 hybrid contribution 0.263 -0.918 1.355 1.658 sum 0.773 13.622 -17.668 22.324 Atomic orbital electron populations 1.22183 0.93892 1.03137 1.02573 1.21991 0.94698 0.90711 0.86747 1.21208 0.98893 0.88409 0.89779 1.45694 1.48948 1.10624 1.30453 1.17347 0.80610 0.81210 0.83503 1.90858 1.37248 1.68475 1.47192 1.20335 1.01774 0.95907 0.94729 1.21503 1.01902 0.93042 0.97728 1.21582 0.97390 0.97729 0.97214 1.15559 1.03998 0.91342 0.91823 1.24296 0.91775 0.93683 0.91728 1.81390 1.11212 1.06811 1.11886 1.41808 1.35146 1.12811 1.20500 0.72611 1.21940 0.97765 0.85324 0.97430 1.44400 1.69205 1.04852 1.15688 1.18819 1.20843 1.11841 0.85718 0.92153 1.25782 0.99921 1.00891 0.95779 1.69929 1.36131 1.50381 1.03382 0.86161 0.82337 0.79368 0.75953 1.19611 1.24051 1.19093 1.21871 0.98158 0.96317 0.85720 1.23143 0.99244 0.81635 0.98675 1.87869 1.72969 1.26411 1.42249 0.92170 0.92276 0.89911 0.89987 0.90788 0.75300 0.81582 0.79768 0.95018 0.91875 0.92887 0.90932 0.94827 0.85818 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 7.86 71.98 0.57 -3.85 16 2 C 0.10 2.98 0.78 -10.70 -0.01 2.97 16 3 C 0.14 3.78 4.85 86.38 0.42 4.19 16 4 N -0.71 -14.30 5.19 -466.73 -2.42 -16.72 16 5 C 0.59 12.89 7.80 86.56 0.68 13.56 16 6 O -0.56 -16.74 16.87 -4.17 -0.07 -16.81 16 7 C -0.01 -0.14 7.04 40.59 0.29 0.14 16 8 C -0.12 -1.54 10.60 22.48 0.24 -1.30 16 9 C -0.11 -1.05 10.80 22.50 0.24 -0.81 16 10 C 0.09 1.01 6.93 39.59 0.27 1.28 16 11 C 0.30 4.26 15.89 88.33 1.40 5.66 16 12 N -0.44 -8.47 18.54 19.00 0.35 -8.11 16 13 N -0.50 -5.36 6.02 -175.94 -1.06 -6.42 16 14 H 0.43 2.73 8.16 -92.70 -0.76 1.97 16 15 C 0.10 4.02 3.05 86.35 0.26 4.28 16 16 N -0.62 -26.88 2.35 -697.49 -1.64 -28.53 16 17 C -0.24 -12.96 10.10 84.03 0.85 -12.11 16 18 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 19 C -0.03 -1.60 5.26 84.86 0.45 -1.15 16 20 N -0.95 -57.83 13.97 21.65 0.30 -57.53 16 21 Si 0.93 45.16 24.29 68.60 1.67 46.83 16 22 H -0.27 -12.20 6.58 99.48 0.65 -11.54 16 23 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 24 H -0.27 -12.56 6.55 99.48 0.65 -11.91 16 25 C 0.10 3.60 6.73 86.35 0.58 4.18 16 26 C 0.05 1.32 6.60 72.08 0.48 1.79 16 27 O -0.38 -10.46 10.17 -148.98 -1.52 -11.97 16 28 H 0.06 1.94 6.12 -2.38 -0.01 1.92 16 29 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.08 1.59 6.59 -2.39 -0.02 1.58 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.41 6.13 6.10 -92.71 -0.57 5.57 16 34 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.19 0.74 8.06 -2.91 -0.02 0.71 16 36 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 37 H 0.06 2.76 4.60 -2.38 -0.01 2.75 16 38 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.07 2.47 7.96 -2.39 -0.02 2.45 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.06 1.53 6.26 -2.39 -0.01 1.52 16 Total: -1.00 -71.35 347.77 1.99 -69.37 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -0.34 Total: 11.04 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 6.71 Total: 18.86 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -4.47 Total: -117.32 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.59 Total: -28.78 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.83 kcal Total: -71.35 1.99 -69.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107877633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.976 kcal (2) G-P(sol) polarization free energy of solvation -71.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds