Wall clock time and date at job start Fri Apr 10 2020 18:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.51422 * 2 1 4 4 N 1.46500 * 109.47408 * 59.99698 * 3 2 1 5 5 C 1.34768 * 120.00377 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99931 * 0.02562 * 5 4 3 7 7 C 1.47374 * 120.00530 * 180.02562 * 5 4 3 8 8 C 1.38133 * 126.46132 * 359.97438 * 7 5 4 9 9 N 1.34425 * 108.38163 * 180.02562 * 8 7 5 10 10 H 0.97006 * 125.38918 * 180.02562 * 9 8 7 11 11 C 1.37704 * 109.22504 * 359.75100 * 9 8 7 12 12 C 1.43201 * 125.84296 * 180.25199 * 11 9 8 13 13 N 9.61770 * 86.86698 * 34.66140 * 2 1 3 14 14 C 1.36348 * 108.31249 * 0.40518 * 11 9 8 15 15 C 1.53297 * 109.51271 * 239.89746 * 2 1 3 16 16 N 1.47151 * 108.38522 * 292.32878 * 15 2 1 17 17 C 1.36938 * 120.98221 * 129.44060 * 16 15 2 18 18 H 1.08001 * 119.99821 * 206.24185 * 17 16 15 19 19 C 1.38811 * 119.99762 * 26.24229 * 17 16 15 20 20 N 1.31621 * 120.00190 * 16.91401 * 19 17 16 21 21 Si 1.86803 * 119.99721 * 196.90842 * 19 17 16 22 22 H 1.48506 * 109.46893 * 60.00154 * 21 19 17 23 23 H 1.48495 * 109.47210 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47374 * 300.00291 * 21 19 17 25 25 C 1.47152 * 118.03585 * 309.46730 * 16 15 2 26 26 C 1.53294 * 108.38585 * 50.53015 * 25 16 15 27 27 O 1.42961 * 109.26708 * 307.72412 * 26 25 16 28 28 H 1.09004 * 109.46887 * 59.99804 * 1 2 3 29 29 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47368 * 300.00536 * 1 2 3 31 31 H 1.09012 * 109.46989 * 299.99794 * 3 2 1 32 32 H 1.08997 * 109.47149 * 180.02562 * 3 2 1 33 33 H 0.96999 * 119.99678 * 0.02562 * 4 3 2 34 34 H 1.07999 * 125.80591 * 0.04974 * 8 7 5 35 35 H 1.08004 * 126.49790 * 179.87138 * 14 11 9 36 36 H 1.08998 * 109.68151 * 52.05170 * 15 2 1 37 37 H 1.08994 * 109.68288 * 172.56737 * 15 2 1 38 38 H 0.96997 * 119.99791 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.68427 * 170.25922 * 25 16 15 40 40 H 1.08999 * 109.68059 * 290.81165 * 25 16 15 41 41 H 1.09000 * 109.50759 * 67.62493 * 26 25 16 42 42 H 1.08998 * 109.51435 * 187.72413 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1332 1.1961 5 6 1.8802 3.4230 1.4096 6 8 2.5799 4.0135 0.6091 7 6 1.3899 4.1181 2.6132 8 6 0.5918 3.5801 3.6039 9 7 0.3634 4.5303 4.5269 10 1 -0.1687 4.4170 5.3301 11 6 1.0092 5.6883 4.1550 12 6 1.0079 6.9205 4.8845 13 7 1.0043 7.8990 5.4617 14 6 1.6473 5.4617 2.9715 15 6 2.0420 -0.7247 -1.2501 16 7 1.6970 -2.1505 -1.1340 17 6 1.0618 -2.8073 -2.1539 18 1 0.4492 -3.6710 -1.9412 19 6 1.2055 -2.3632 -3.4612 20 7 2.1870 -1.5439 -3.7738 21 14 0.0057 -2.9284 -4.7767 22 1 -1.3699 -2.5102 -4.4048 23 1 0.3737 -2.3159 -6.0784 24 1 0.0590 -4.4079 -4.8926 25 6 2.0541 -2.8494 0.1108 26 6 1.5416 -2.0212 1.2945 27 8 2.0076 -0.6758 1.1658 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6781 1.9562 -0.8901 32 1 3.1310 1.4413 -0.0005 33 1 0.9955 1.6621 1.8348 34 1 0.2157 2.5681 3.6324 35 1 2.2408 6.1723 2.4154 36 1 1.5698 -0.3038 -2.1377 37 1 3.1238 -0.6129 -1.3219 38 1 2.2871 -1.2332 -4.6872 39 1 1.5900 -3.8355 0.1243 40 1 3.1373 -2.9521 0.1763 41 1 0.4516 -2.0293 1.2996 42 1 1.9132 -2.4484 2.2258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107883141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:15 Heat of formation + Delta-G solvation = 25.421562 kcal Electronic energy + Delta-G solvation = -26329.818108 eV Core-core repulsion = 22505.034495 eV Total energy + Delta-G solvation = -3824.783613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.83952 -39.53675 -38.52436 -36.82722 -34.90788 -34.33163 -32.15184 -31.53386 -31.27204 -30.06021 -27.97447 -26.54011 -25.69116 -23.28225 -23.00133 -22.82302 -21.10323 -20.42725 -19.70866 -18.61474 -17.11669 -16.63383 -16.32908 -15.86144 -15.50784 -15.24631 -15.08894 -14.50873 -14.47861 -14.36765 -14.04296 -13.80261 -13.53491 -13.44252 -13.35278 -13.09931 -12.89585 -12.73201 -12.61905 -12.45742 -11.89090 -11.61249 -11.21286 -11.02593 -10.82567 -10.69911 -10.33360 -10.29142 -10.03589 -9.85478 -9.55555 -9.52809 -9.07402 -8.87452 -8.67588 -8.55254 -6.76129 -5.86228 -3.29734 0.96913 1.59688 1.86988 2.73848 3.01210 3.29254 3.33910 3.39902 3.40525 3.54625 3.70382 4.23097 4.42025 4.50909 4.62446 4.90913 5.14049 5.31645 5.37666 5.47229 5.52034 5.57730 5.65600 5.88257 5.91494 6.02443 6.06471 6.11662 6.14612 6.22212 6.30914 6.43857 6.56505 6.67282 6.70773 6.75461 6.80326 7.03492 7.05615 7.45819 7.68495 7.73615 7.85551 8.31313 8.43799 9.09089 9.72127 10.29126 11.21703 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002677 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.592333 B =10455.159800 C =10902.415795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.141 3.859 4 N -0.714 5.714 5 C 0.582 3.418 6 O -0.544 6.544 7 C -0.217 4.217 8 C 0.084 3.916 9 N -0.520 5.520 10 H 0.426 0.574 11 C 0.039 3.961 12 C 0.281 3.719 13 N -0.408 5.408 14 C -0.047 4.047 15 C 0.159 3.841 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.188 0.812 35 H 0.161 0.839 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.257 0.743 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.047 0.953 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 7.200 16.321 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.017 3.983 4 N -0.365 5.365 5 C 0.369 3.631 6 O -0.422 6.422 7 C -0.227 4.227 8 C -0.058 4.058 9 N -0.114 5.114 10 H 0.264 0.736 11 C -0.072 4.072 12 C -0.034 4.034 13 N -0.085 5.085 14 C -0.075 4.075 15 C 0.032 3.968 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.303 6.303 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.205 0.795 35 H 0.179 0.821 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.064 9.273 16.703 19.764 hybrid contribution -1.254 -1.257 -0.446 1.830 sum -6.317 8.016 16.257 19.195 Atomic orbital electron populations 1.22204 0.95780 1.03159 1.00730 1.22557 0.93519 0.90723 0.89499 1.21361 0.99997 0.89722 0.87201 1.45787 1.53470 1.11308 1.25912 1.17312 0.79991 0.81350 0.84427 1.90801 1.38343 1.66395 1.46634 1.19733 1.08497 0.95710 0.98750 1.22562 0.99403 0.94589 0.89251 1.41549 1.39819 1.08869 1.21188 0.73571 1.15153 1.10007 0.83838 0.98220 1.24287 0.93875 0.92117 0.93135 1.81332 1.08778 1.10394 1.07956 1.21123 0.98050 0.95688 0.92653 1.21300 0.97897 0.83893 0.93692 1.43987 1.68594 1.04959 1.13859 1.19102 1.21749 1.12251 0.85400 0.91496 1.25037 0.97253 1.00093 0.97084 1.70000 1.29119 1.36672 1.18671 0.86366 0.80986 0.78325 0.81067 1.20993 1.21535 1.20884 1.21593 0.97558 0.95209 0.87406 1.23024 0.98246 0.83191 0.98707 1.87811 1.73063 1.25685 1.43763 0.91832 0.90886 0.94008 0.89947 0.90728 0.76660 0.79513 0.82137 0.88516 0.95202 0.93327 0.92108 0.95665 0.93434 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 7.92 37.16 0.29 -2.21 16 2 C 0.08 1.34 0.76 -90.47 -0.07 1.27 16 3 C 0.14 2.24 4.82 -4.04 -0.02 2.22 16 4 N -0.71 -9.06 5.14 -61.40 -0.32 -9.38 16 5 C 0.58 7.89 7.81 -12.55 -0.10 7.79 16 6 O -0.54 -9.65 16.92 5.26 0.09 -9.56 16 7 C -0.22 -2.12 6.13 -105.01 -0.64 -2.76 16 8 C 0.08 0.48 11.43 -16.45 -0.19 0.29 16 9 N -0.52 -2.45 6.02 -10.29 -0.06 -2.51 16 10 H 0.43 0.63 8.96 -40.82 -0.37 0.26 16 11 C 0.04 0.29 6.90 -83.98 -0.58 -0.29 16 12 C 0.28 2.50 15.88 -22.47 -0.36 2.15 16 13 N -0.41 -4.53 18.54 41.84 0.78 -3.76 16 14 C -0.05 -0.43 10.59 -39.05 -0.41 -0.85 16 15 C 0.16 3.54 4.11 -3.53 -0.01 3.52 16 16 N -0.59 -13.81 2.57 -171.83 -0.44 -14.25 16 17 C -0.26 -6.60 9.65 -15.06 -0.15 -6.74 16 18 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 19 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 20 N -0.90 -25.09 11.14 55.49 0.62 -24.47 16 21 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.11 2.12 6.74 -3.53 -0.02 2.10 16 26 C 0.05 0.73 6.60 37.31 0.25 0.98 16 27 O -0.38 -6.45 9.98 -35.23 -0.35 -6.80 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.26 6.12 -51.93 -0.32 0.95 16 30 H 0.04 0.51 6.87 -51.93 -0.36 0.15 16 31 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.40 4.04 6.11 -40.82 -0.25 3.79 16 34 H 0.19 0.48 7.44 -52.49 -0.39 0.09 16 35 H 0.16 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.10 2.39 6.13 -51.93 -0.32 2.08 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.72 6.25 -51.93 -0.32 0.40 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -33.02 354.43 -6.72 -39.74 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.24 Total: 2.36 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.10 Total: 7.51 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.57 Total: -54.37 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.26 Total: -16.36 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.02 -6.72 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107883141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.164 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds