Wall clock time and date at job start Fri Apr 10 2020 18:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.51264 * 2 1 4 4 N 1.46511 * 109.46688 * 59.90282 * 3 2 1 5 5 C 1.34773 * 119.99660 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00622 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99676 * 179.97438 * 5 4 3 8 8 H 1.09005 * 115.54851 * 325.66685 * 7 5 4 9 9 C 1.52996 * 117.49951 * 111.38008 * 7 5 4 10 10 C 1.53003 * 117.49881 * 180.02562 * 7 5 4 11 11 H 1.09002 * 117.49579 * 0.02562 * 10 7 5 12 12 C 1.53001 * 117.50260 * 145.02294 * 10 7 5 13 13 F 1.39898 * 109.47312 * 179.97438 * 12 10 7 14 14 F 1.39903 * 109.46413 * 299.99522 * 12 10 7 15 15 C 1.53305 * 109.51270 * 239.90524 * 2 1 3 16 16 N 1.47153 * 108.38117 * 292.32487 * 15 2 1 17 17 C 1.36937 * 120.98344 * 129.44135 * 16 15 2 18 18 H 1.08007 * 119.99657 * 333.66082 * 17 16 15 19 19 C 1.38812 * 120.00149 * 153.65563 * 17 16 15 20 20 N 1.31608 * 120.00041 * 334.96609 * 19 17 16 21 21 Si 1.86804 * 119.99759 * 154.96275 * 19 17 16 22 22 H 1.48504 * 109.47099 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46978 * 240.00020 * 21 19 17 24 24 H 1.48505 * 109.47009 * 120.00164 * 21 19 17 25 25 C 1.47154 * 118.03853 * 309.71667 * 16 15 2 26 26 C 1.52877 * 108.60853 * 50.22658 * 25 16 15 27 27 O 1.42956 * 109.55848 * 120.13321 * 2 1 3 28 28 H 1.09004 * 109.46437 * 180.09922 * 1 2 3 29 29 H 1.08999 * 109.47094 * 300.09138 * 1 2 3 30 30 H 1.08996 * 109.47387 * 60.09713 * 1 2 3 31 31 H 1.09001 * 109.47227 * 179.89582 * 3 2 1 32 32 H 1.08993 * 109.47632 * 299.90450 * 3 2 1 33 33 H 0.96995 * 119.99679 * 359.97438 * 4 3 2 34 34 H 1.09002 * 117.50021 * 214.97459 * 9 7 5 35 35 H 1.09003 * 117.49807 * 359.97438 * 9 7 5 36 36 H 1.09003 * 109.47290 * 59.99200 * 12 10 7 37 37 H 1.08995 * 109.68083 * 172.60201 * 15 2 1 38 38 H 1.08992 * 109.71074 * 52.06571 * 15 2 1 39 39 H 0.97006 * 120.00245 * 354.23460 * 20 19 17 40 40 H 1.08997 * 109.68421 * 170.01151 * 25 16 15 41 41 H 1.09000 * 109.68138 * 290.56353 * 25 16 15 42 42 H 1.08999 * 109.58500 * 187.92992 * 26 25 16 43 43 H 1.09004 * 109.41073 * 67.83873 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5512 2.1337 1.1951 5 6 1.8778 3.4237 1.4085 6 8 2.5767 4.0123 0.6110 7 6 1.3735 4.1353 2.6375 8 1 0.3800 3.8415 2.9763 9 6 2.4011 4.5151 3.7055 10 6 1.7785 5.5991 2.8224 11 1 2.4094 6.0475 2.0549 12 6 0.7586 6.5380 3.4698 13 9 1.2993 7.8253 3.5569 14 9 -0.4037 6.5715 2.6918 15 6 2.0421 -0.7246 -1.2502 16 7 1.6971 -2.1504 -1.1342 17 6 1.0619 -2.8072 -2.1541 18 1 0.4395 -2.2580 -2.8452 19 6 1.2180 -4.1788 -2.2999 20 7 2.2940 -4.7724 -1.8287 21 14 -0.0993 -5.1820 -3.1648 22 1 -1.1998 -4.2844 -3.5989 23 1 -0.6339 -6.2060 -2.2317 24 1 0.4891 -5.8530 -4.3518 25 6 2.0492 -2.8480 0.1127 26 6 1.5417 -2.0214 1.2943 27 8 2.0086 -0.6762 1.1650 28 1 -0.3632 -1.0277 0.0018 29 1 -0.3633 0.5152 0.8892 30 1 -0.3634 0.5123 -0.8908 31 1 3.1311 1.4413 0.0019 32 1 1.6796 1.9557 -0.8907 33 1 0.9919 1.6631 1.8327 34 1 2.0838 4.4712 4.7474 35 1 3.4418 4.2500 3.5194 36 1 0.5163 6.1776 4.4696 37 1 3.1240 -0.6133 -1.3217 38 1 1.5703 -0.3038 -2.1381 39 1 3.0156 -4.2429 -1.4547 40 1 1.5818 -3.8326 0.1271 41 1 3.1319 -2.9542 0.1808 42 1 1.9142 -2.4481 2.2256 43 1 0.4517 -2.0293 1.3004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107912780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:21 Heat of formation + Delta-G solvation = -137.188525 kcal Electronic energy + Delta-G solvation = -27243.209880 eV Core-core repulsion = 22960.685779 eV Total energy + Delta-G solvation = -4282.524102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.26510 -47.29725 -40.29492 -39.22133 -37.03263 -35.25155 -34.52855 -32.24192 -30.83643 -28.40425 -27.96760 -26.74691 -25.57941 -23.74449 -23.39694 -21.95614 -21.22358 -20.35232 -18.85726 -18.24859 -17.64361 -17.49319 -17.25869 -16.73318 -16.13619 -15.72895 -15.16967 -15.03064 -14.51235 -14.40993 -14.20036 -14.00013 -13.82898 -13.75152 -13.66023 -13.45185 -13.10260 -12.87978 -12.71767 -12.56615 -12.19514 -11.73379 -11.42690 -11.40994 -11.19253 -11.10928 -10.98781 -10.72401 -10.65799 -10.61676 -10.17430 -10.09241 -9.91722 -9.50126 -9.23333 -9.08199 -8.45015 -6.99296 -6.16477 -3.34098 2.24408 2.84307 3.13144 3.44756 3.46263 3.47235 3.60517 3.79000 4.00374 4.02821 4.17929 4.41598 4.47799 4.67450 4.74722 4.80575 4.91517 5.11353 5.17461 5.22549 5.30847 5.42113 5.42848 5.57831 5.70594 5.82424 5.84434 5.90130 5.98894 6.15542 6.24120 6.28223 6.39406 6.51744 6.58501 6.75311 6.97302 7.43030 7.65298 7.86159 8.11134 8.44635 8.96256 9.71809 10.14467 11.11702 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.033663 B = 0.002433 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.585233 B =11505.248441 C =11719.458853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.088 3.912 3 C 0.138 3.862 4 N -0.709 5.709 5 C 0.540 3.460 6 O -0.542 6.542 7 C -0.166 4.166 8 H 0.132 0.868 9 C -0.127 4.127 10 C -0.193 4.193 11 H 0.141 0.859 12 C 0.297 3.703 13 F -0.200 7.200 14 F -0.201 7.201 15 C 0.130 3.870 16 N -0.596 5.596 17 C -0.351 4.351 18 H 0.060 0.940 19 C -0.023 4.023 20 N -0.915 5.915 21 Si 1.069 2.931 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.117 3.883 26 C 0.042 3.958 27 O -0.382 6.382 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.405 0.595 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.025 0.975 42 H 0.083 0.917 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 16.989 13.966 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 C 0.014 3.986 4 N -0.360 5.360 5 C 0.325 3.675 6 O -0.420 6.420 7 C -0.188 4.188 8 H 0.149 0.851 9 C -0.164 4.164 10 C -0.212 4.212 11 H 0.158 0.842 12 C 0.243 3.757 13 F -0.182 7.182 14 F -0.182 7.182 15 C 0.003 3.997 16 N -0.321 5.321 17 C -0.479 4.479 18 H 0.077 0.923 19 C -0.226 4.226 20 N -0.555 5.555 21 Si 0.899 3.101 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.009 4.009 26 C -0.035 4.035 27 O -0.302 6.302 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.241 0.759 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.101 0.899 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.579 15.942 13.028 20.897 hybrid contribution -0.021 1.208 0.369 1.263 sum -3.600 17.150 13.397 22.058 Atomic orbital electron populations 1.22241 0.95321 1.03730 1.01003 1.22201 0.93766 0.90340 0.89029 1.21388 0.99906 0.89832 0.87432 1.45819 1.53092 1.11243 1.25855 1.19401 0.80240 0.81869 0.85954 1.90717 1.38248 1.66331 1.46697 1.22218 1.01937 0.96369 0.98236 0.85056 1.23139 0.99188 0.98406 0.95678 1.23363 1.02503 0.90292 1.05083 0.84161 1.21296 0.79846 0.79759 0.94800 1.93000 1.86405 1.41650 1.97096 1.93018 1.50546 1.96554 1.78121 1.21416 0.97289 0.86653 0.94325 1.44070 1.69503 1.05034 1.13490 1.20005 1.24840 0.93519 1.09550 0.92267 1.25863 1.00636 0.95456 1.00601 1.70724 1.04764 1.39435 1.40595 0.83471 0.75054 0.75507 0.76065 1.21787 1.21617 1.22026 1.21521 0.97643 0.96723 0.84964 1.23116 0.98549 0.82460 0.99402 1.87824 1.72901 1.26405 1.43035 0.90346 0.93438 0.91963 0.90758 0.90079 0.75941 0.86826 0.86823 0.86941 0.95539 0.91622 0.91875 0.89556 0.95693 0.89901 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 7.92 37.16 0.29 -2.22 16 2 C 0.09 1.44 0.76 -90.46 -0.07 1.37 16 3 C 0.14 2.01 4.82 -4.04 -0.02 1.99 16 4 N -0.71 -8.70 5.15 -60.29 -0.31 -9.01 16 5 C 0.54 6.81 7.61 -10.99 -0.08 6.72 16 6 O -0.54 -8.92 16.26 5.56 0.09 -8.83 16 7 C -0.17 -1.41 5.86 -91.77 -0.54 -1.95 16 8 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 9 C -0.13 -0.81 9.88 -26.71 -0.26 -1.07 16 10 C -0.19 -1.60 5.41 -90.59 -0.49 -2.09 16 11 H 0.14 1.46 7.67 -51.93 -0.40 1.06 16 12 C 0.30 2.18 5.50 37.16 0.20 2.38 16 13 F -0.20 -1.86 17.34 2.25 0.04 -1.83 16 14 F -0.20 -1.99 17.29 2.25 0.04 -1.95 16 15 C 0.13 2.63 5.41 -3.53 -0.02 2.61 16 16 N -0.60 -14.19 2.44 -172.08 -0.42 -14.61 16 17 C -0.35 -9.33 9.54 -15.06 -0.14 -9.48 16 18 H 0.06 1.59 7.94 -52.48 -0.42 1.17 16 19 C -0.02 -0.64 4.71 -17.44 -0.08 -0.72 16 20 N -0.92 -26.64 12.44 55.49 0.69 -25.95 16 21 Si 1.07 24.49 29.99 -169.99 -5.10 19.39 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.12 2.62 4.85 -3.75 -0.02 2.60 16 26 C 0.04 0.75 6.58 37.09 0.24 1.00 16 27 O -0.38 -6.61 9.98 -35.23 -0.35 -6.97 16 28 H 0.08 1.39 6.11 -51.93 -0.32 1.07 16 29 H 0.05 0.60 6.86 -51.93 -0.36 0.24 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.41 4.29 7.20 -40.82 -0.29 4.00 16 34 H 0.11 0.39 8.05 -51.93 -0.42 -0.03 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.41 7.90 -51.93 -0.41 0.00 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.30 7.95 -51.93 -0.41 0.89 16 39 H 0.27 7.96 6.61 -40.82 -0.27 7.69 16 40 H 0.09 2.13 6.44 -51.93 -0.33 1.79 16 41 H 0.03 0.59 7.76 -51.93 -0.40 0.19 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.86 6.25 -51.93 -0.32 0.54 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -32.24 354.81 -7.07 -39.31 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.11 Total: 3.94 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.98 Total: 1.15 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.04 Total: -49.57 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.26 Total: -15.80 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.10 Total: 19.39 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.24 -7.07 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107912780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.879 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds