Wall clock time and date at job start Fri Apr 10 2020 18:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.51264 * 2 1 4 4 N 1.46511 * 109.46688 * 59.90282 * 3 2 1 5 5 C 1.34773 * 119.99660 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00622 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99676 * 179.97438 * 5 4 3 8 8 H 1.09005 * 115.54851 * 325.66685 * 7 5 4 9 9 C 1.52996 * 117.49951 * 111.38008 * 7 5 4 10 10 C 1.53003 * 117.49881 * 180.02562 * 7 5 4 11 11 H 1.09002 * 117.49579 * 0.02562 * 10 7 5 12 12 C 1.53001 * 117.50260 * 145.02294 * 10 7 5 13 13 F 1.39898 * 109.47312 * 179.97438 * 12 10 7 14 14 F 1.39903 * 109.46413 * 299.99522 * 12 10 7 15 15 C 1.53305 * 109.51270 * 239.90524 * 2 1 3 16 16 N 1.47153 * 108.38117 * 292.32487 * 15 2 1 17 17 C 1.36937 * 120.98344 * 129.44135 * 16 15 2 18 18 H 1.08007 * 119.99657 * 333.66082 * 17 16 15 19 19 C 1.38812 * 120.00149 * 153.65563 * 17 16 15 20 20 N 1.31608 * 120.00041 * 334.96609 * 19 17 16 21 21 Si 1.86804 * 119.99759 * 154.96275 * 19 17 16 22 22 H 1.48504 * 109.47099 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46978 * 240.00020 * 21 19 17 24 24 H 1.48505 * 109.47009 * 120.00164 * 21 19 17 25 25 C 1.47154 * 118.03853 * 309.71667 * 16 15 2 26 26 C 1.52877 * 108.60853 * 50.22658 * 25 16 15 27 27 O 1.42956 * 109.55848 * 120.13321 * 2 1 3 28 28 H 1.09004 * 109.46437 * 180.09922 * 1 2 3 29 29 H 1.08999 * 109.47094 * 300.09138 * 1 2 3 30 30 H 1.08996 * 109.47387 * 60.09713 * 1 2 3 31 31 H 1.09001 * 109.47227 * 179.89582 * 3 2 1 32 32 H 1.08993 * 109.47632 * 299.90450 * 3 2 1 33 33 H 0.96995 * 119.99679 * 359.97438 * 4 3 2 34 34 H 1.09002 * 117.50021 * 214.97459 * 9 7 5 35 35 H 1.09003 * 117.49807 * 359.97438 * 9 7 5 36 36 H 1.09003 * 109.47290 * 59.99200 * 12 10 7 37 37 H 1.08995 * 109.68083 * 172.60201 * 15 2 1 38 38 H 1.08992 * 109.71074 * 52.06571 * 15 2 1 39 39 H 0.97006 * 120.00245 * 354.23460 * 20 19 17 40 40 H 1.08997 * 109.68421 * 170.01151 * 25 16 15 41 41 H 1.09000 * 109.68138 * 290.56353 * 25 16 15 42 42 H 1.08999 * 109.58500 * 187.92992 * 26 25 16 43 43 H 1.09004 * 109.41073 * 67.83873 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5512 2.1337 1.1951 5 6 1.8778 3.4237 1.4085 6 8 2.5767 4.0123 0.6110 7 6 1.3735 4.1353 2.6375 8 1 0.3800 3.8415 2.9763 9 6 2.4011 4.5151 3.7055 10 6 1.7785 5.5991 2.8224 11 1 2.4094 6.0475 2.0549 12 6 0.7586 6.5380 3.4698 13 9 1.2993 7.8253 3.5569 14 9 -0.4037 6.5715 2.6918 15 6 2.0421 -0.7246 -1.2502 16 7 1.6971 -2.1504 -1.1342 17 6 1.0619 -2.8072 -2.1541 18 1 0.4395 -2.2580 -2.8452 19 6 1.2180 -4.1788 -2.2999 20 7 2.2940 -4.7724 -1.8287 21 14 -0.0993 -5.1820 -3.1648 22 1 -1.1998 -4.2844 -3.5989 23 1 -0.6339 -6.2060 -2.2317 24 1 0.4891 -5.8530 -4.3518 25 6 2.0492 -2.8480 0.1127 26 6 1.5417 -2.0214 1.2943 27 8 2.0086 -0.6762 1.1650 28 1 -0.3632 -1.0277 0.0018 29 1 -0.3633 0.5152 0.8892 30 1 -0.3634 0.5123 -0.8908 31 1 3.1311 1.4413 0.0019 32 1 1.6796 1.9557 -0.8907 33 1 0.9919 1.6631 1.8327 34 1 2.0838 4.4712 4.7474 35 1 3.4418 4.2500 3.5194 36 1 0.5163 6.1776 4.4696 37 1 3.1240 -0.6133 -1.3217 38 1 1.5703 -0.3038 -2.1381 39 1 3.0156 -4.2429 -1.4547 40 1 1.5818 -3.8326 0.1271 41 1 3.1319 -2.9542 0.1808 42 1 1.9142 -2.4481 2.2256 43 1 0.4517 -2.0293 1.3004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107912780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:20 Heat of formation + Delta-G solvation = -158.677842 kcal Electronic energy + Delta-G solvation = -27244.141727 eV Core-core repulsion = 22960.685779 eV Total energy + Delta-G solvation = -4283.455948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.88035 -47.93408 -41.38251 -40.55432 -37.82657 -36.85769 -35.94108 -33.72040 -32.64820 -29.95940 -28.78969 -27.91807 -27.09438 -25.13523 -24.67893 -22.93334 -22.42316 -21.30704 -20.31523 -19.56395 -19.01102 -18.14695 -17.94900 -17.68964 -17.29234 -16.87007 -16.64725 -16.18611 -16.08734 -15.76421 -15.60677 -15.44798 -14.85983 -14.82414 -14.61914 -14.43322 -14.31518 -14.03972 -13.92227 -13.60851 -13.14824 -13.13206 -13.05675 -12.80674 -12.50517 -12.27254 -12.17076 -12.00000 -11.89652 -11.78480 -11.73763 -11.59649 -11.19775 -11.00446 -10.92561 -10.44062 -10.18560 -8.97772 -8.28308 -5.45235 1.36627 1.58489 1.65339 1.81472 1.93839 2.50526 2.58551 2.67152 2.84360 3.15945 3.30387 3.36559 3.41642 3.58387 3.73585 3.79319 3.85127 3.93944 4.02486 4.22675 4.23429 4.30521 4.33588 4.49280 4.54390 4.58821 4.65122 4.69988 4.72920 4.87810 4.89704 4.91643 5.00077 5.03518 5.13926 5.30393 5.33071 5.76477 6.20502 6.32246 6.47732 6.93846 7.15119 7.68910 8.12608 8.95765 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.033663 B = 0.002433 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.585233 B =11505.248441 C =11719.458853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 C 0.148 3.852 4 N -0.700 5.700 5 C 0.535 3.465 6 O -0.589 6.589 7 C -0.171 4.171 8 H 0.164 0.836 9 C -0.101 4.101 10 C -0.206 4.206 11 H 0.108 0.892 12 C 0.295 3.705 13 F -0.215 7.215 14 F -0.218 7.218 15 C 0.124 3.876 16 N -0.612 5.612 17 C -0.350 4.350 18 H 0.055 0.945 19 C -0.075 4.075 20 N -0.943 5.943 21 Si 1.119 2.881 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.295 1.295 25 C 0.121 3.879 26 C 0.056 3.944 27 O -0.379 6.379 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.417 0.583 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.012 0.988 38 H 0.064 0.936 39 H 0.254 0.746 40 H 0.059 0.941 41 H 0.002 0.998 42 H 0.113 0.887 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.664 17.948 16.401 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 C 0.023 3.977 4 N -0.351 5.351 5 C 0.323 3.677 6 O -0.470 6.470 7 C -0.191 4.191 8 H 0.182 0.818 9 C -0.138 4.138 10 C -0.226 4.226 11 H 0.126 0.874 12 C 0.242 3.758 13 F -0.197 7.197 14 F -0.200 7.200 15 C -0.002 4.002 16 N -0.337 5.337 17 C -0.480 4.480 18 H 0.073 0.927 19 C -0.271 4.271 20 N -0.585 5.585 21 Si 0.944 3.056 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.222 1.222 25 C -0.005 4.005 26 C -0.022 4.022 27 O -0.298 6.298 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.255 0.745 34 H 0.175 0.825 35 H 0.120 0.880 36 H 0.181 0.819 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.131 0.869 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.550 16.930 15.497 23.613 hybrid contribution 0.685 0.976 -0.447 1.274 sum -4.865 17.906 15.050 23.892 Atomic orbital electron populations 1.22164 0.93701 1.02739 1.02921 1.22016 0.94784 0.90543 0.86716 1.21100 0.98972 0.88853 0.88797 1.45690 1.52986 1.11295 1.25177 1.20151 0.79245 0.81585 0.86718 1.90702 1.40377 1.67258 1.48651 1.22261 1.04003 0.95825 0.97058 0.81838 1.23338 0.98139 0.95244 0.97094 1.23294 1.03115 0.90573 1.05599 0.87401 1.21784 0.78725 0.78759 0.96540 1.92969 1.86657 1.42867 1.97178 1.92983 1.51462 1.96564 1.78947 1.21572 0.96578 0.85367 0.96711 1.44272 1.69529 1.06276 1.13642 1.20235 1.24058 0.93829 1.09846 0.92710 1.27189 1.01661 0.97013 1.01280 1.70853 1.05470 1.39215 1.42979 0.82806 0.73243 0.74569 0.75027 1.19703 1.21105 1.22198 1.21448 0.96127 0.96453 0.86479 1.22997 0.99098 0.81842 0.98220 1.87840 1.73156 1.25957 1.42889 0.92660 0.90069 0.91557 0.92334 0.89982 0.74524 0.82515 0.87952 0.81880 0.97045 0.91731 0.93629 0.92293 0.97958 0.86942 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 7.92 71.98 0.57 -3.87 16 2 C 0.10 3.18 0.76 -10.69 -0.01 3.17 16 3 C 0.15 4.17 4.82 86.38 0.42 4.59 16 4 N -0.70 -15.65 5.15 -463.06 -2.39 -18.03 16 5 C 0.54 12.70 7.61 87.66 0.67 13.37 16 6 O -0.59 -19.51 16.26 -3.02 -0.05 -19.56 16 7 C -0.17 -2.38 5.86 -11.54 -0.07 -2.44 16 8 H 0.16 1.23 8.14 -2.38 -0.02 1.21 16 9 C -0.10 -0.93 9.88 30.61 0.30 -0.62 16 10 C -0.21 -3.03 5.41 -10.78 -0.06 -3.09 16 11 H 0.11 2.30 7.67 -2.39 -0.02 2.28 16 12 C 0.29 3.50 5.50 71.98 0.40 3.90 16 13 F -0.22 -3.68 17.34 44.97 0.78 -2.90 16 14 F -0.22 -3.85 17.29 44.97 0.78 -3.07 16 15 C 0.12 5.08 5.41 86.36 0.47 5.55 16 16 N -0.61 -29.67 2.44 -698.33 -1.70 -31.37 16 17 C -0.35 -18.93 9.54 84.03 0.80 -18.13 16 18 H 0.06 2.96 7.94 -2.91 -0.02 2.94 16 19 C -0.08 -4.16 4.71 84.86 0.40 -3.76 16 20 N -0.94 -56.50 12.44 21.65 0.27 -56.23 16 21 Si 1.12 49.61 29.99 68.60 2.06 51.67 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 25 C 0.12 5.48 4.85 86.21 0.42 5.90 16 26 C 0.06 1.90 6.58 71.94 0.47 2.37 16 27 O -0.38 -12.42 9.98 -148.98 -1.49 -13.91 16 28 H 0.05 1.85 6.11 -2.39 -0.01 1.83 16 29 H 0.08 1.73 6.86 -2.39 -0.02 1.72 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.42 7.32 7.20 -92.71 -0.67 6.65 16 34 H 0.16 0.13 8.05 -2.39 -0.02 0.11 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.16 0.33 7.90 -2.39 -0.02 0.31 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 38 H 0.06 2.61 7.95 -2.39 -0.02 2.59 16 39 H 0.25 15.62 6.61 -92.70 -0.61 15.01 16 40 H 0.06 2.99 6.44 -2.39 -0.02 2.97 16 41 H 0.00 0.12 7.76 -2.39 -0.02 0.10 16 42 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.06 1.97 6.25 -2.39 -0.01 1.95 16 Total: -1.00 -73.92 354.81 3.56 -70.36 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.53 Total: 16.11 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 4.78 Total: 6.93 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.82 Total: -105.63 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.54 Total: -33.46 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 1.56 Total: -5.97 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.06 Total: 51.67 kcal Total: -73.92 3.56 -70.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107912780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.320 kcal (2) G-P(sol) polarization free energy of solvation -73.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds