Wall clock time and date at job start Fri Apr 10 2020 18:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.51421 * 2 1 4 4 N 1.46498 * 109.47208 * 305.10272 * 3 2 1 5 5 C 1.34772 * 119.99899 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00202 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00153 * 179.97438 * 5 4 3 8 8 H 1.09004 * 115.54854 * 325.71771 * 7 5 4 9 9 C 1.52999 * 117.50191 * 111.38533 * 7 5 4 10 10 C 1.53003 * 60.02982 * 107.50625 * 9 7 5 11 11 H 1.09005 * 117.50008 * 252.52293 * 10 9 7 12 12 C 1.53002 * 117.49944 * 107.50519 * 10 9 7 13 13 F 1.39901 * 109.47026 * 111.39187 * 12 10 9 14 14 F 1.39902 * 109.46789 * 231.38825 * 12 10 9 15 15 C 1.53296 * 109.50900 * 120.10239 * 2 1 3 16 16 N 1.47157 * 108.38509 * 67.67273 * 15 2 1 17 17 C 1.36933 * 120.98376 * 230.51113 * 16 15 2 18 18 H 1.07996 * 120.00162 * 153.33040 * 17 16 15 19 19 C 1.38814 * 119.99730 * 333.33354 * 17 16 15 20 20 N 1.31621 * 119.99854 * 343.53601 * 19 17 16 21 21 Si 1.86800 * 119.99932 * 163.54617 * 19 17 16 22 22 H 1.48495 * 109.47137 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47588 * 119.99634 * 21 19 17 24 24 H 1.48508 * 109.46892 * 239.99370 * 21 19 17 25 25 C 1.47159 * 118.03516 * 50.53227 * 16 15 2 26 26 C 1.53295 * 108.38484 * 309.46923 * 25 16 15 27 27 O 1.42958 * 109.55467 * 239.87392 * 2 1 3 28 28 H 1.09007 * 109.47020 * 59.99763 * 1 2 3 29 29 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47285 * 300.00178 * 1 2 3 31 31 H 1.08996 * 109.47038 * 185.09702 * 3 2 1 32 32 H 1.09004 * 109.46772 * 65.09936 * 3 2 1 33 33 H 0.97002 * 120.00146 * 359.97438 * 4 3 2 34 34 H 1.08993 * 117.50079 * 215.00084 * 9 7 5 35 35 H 1.09003 * 117.49914 * 0.02562 * 9 7 5 36 36 H 1.09002 * 109.46862 * 351.38943 * 12 10 9 37 37 H 1.08998 * 109.68125 * 187.39153 * 15 2 1 38 38 H 1.08994 * 109.68299 * 307.91533 * 15 2 1 39 39 H 0.97005 * 119.99741 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.67755 * 69.18701 * 25 16 15 41 41 H 1.08991 * 109.67961 * 189.73943 * 25 16 15 42 42 H 1.09000 * 109.51124 * 172.22739 * 26 25 16 43 43 H 1.09009 * 109.50946 * 292.37784 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4556 2.1677 -1.1300 5 6 1.7652 3.4638 -1.3317 6 8 2.5281 4.0295 -0.5776 7 6 1.1634 4.2101 -2.4944 8 1 0.9999 3.6213 -3.3971 9 6 0.1521 5.3138 -2.1783 10 6 1.5540 5.6797 -2.6700 11 1 2.2465 6.1064 -1.9443 12 6 1.6853 6.2103 -4.0990 13 9 2.0459 7.5616 -4.0633 14 9 2.6688 5.4830 -4.7779 15 6 2.0420 -0.7247 1.2501 16 7 1.6969 -2.1505 1.1339 17 6 1.0626 -2.8077 2.1542 18 1 0.4443 -3.6671 1.9410 19 6 1.2142 -2.3691 3.4624 20 7 2.1963 -1.5492 3.7720 21 14 0.0247 -2.9426 4.7836 22 1 -0.9822 -3.8530 4.1816 23 1 0.7730 -3.6636 5.8444 24 1 -0.6628 -1.7665 5.3750 25 6 2.0541 -2.8495 -0.1108 26 6 1.5416 -2.0212 -1.2946 27 8 2.0085 -0.6761 -1.1652 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1272 1.4426 -0.0913 32 1 1.7546 1.9290 0.9322 33 1 0.8457 1.7151 -1.7334 34 1 -0.6766 5.4512 -2.8729 35 1 -0.0777 5.5005 -1.1292 36 1 0.7317 6.1022 -4.6158 37 1 3.1239 -0.6136 1.3216 38 1 1.5701 -0.3035 2.1377 39 1 2.3025 -1.2430 4.6863 40 1 3.1374 -2.9521 -0.1763 41 1 1.5900 -3.8355 -0.1243 42 1 1.9141 -2.4479 -2.2259 43 1 0.4516 -2.0293 -1.2997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107912781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:23 Heat of formation + Delta-G solvation = -133.870965 kcal Electronic energy + Delta-G solvation = -27394.550804 eV Core-core repulsion = 23112.170563 eV Total energy + Delta-G solvation = -4282.380242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.19743 -47.22823 -40.15181 -39.03164 -36.91971 -34.96210 -34.37305 -31.78852 -31.29067 -28.04210 -27.86859 -26.60399 -25.82317 -23.71481 -23.25890 -21.88628 -21.14976 -20.22083 -18.77796 -18.16789 -17.46142 -17.19572 -17.10861 -16.54357 -15.93682 -15.53883 -15.16053 -14.88588 -14.55044 -14.24148 -14.12590 -14.02275 -13.69132 -13.59341 -13.55735 -13.22452 -12.99318 -12.78460 -12.52498 -12.47619 -11.99722 -11.64085 -11.33721 -11.24382 -11.11692 -11.05182 -10.90065 -10.86217 -10.70074 -10.35357 -10.26989 -10.06768 -9.87912 -9.57757 -9.08847 -8.90936 -8.58265 -6.77711 -5.88452 -3.32427 2.35828 2.98517 3.21808 3.30313 3.38573 3.40290 3.54800 3.86396 4.08159 4.20336 4.25475 4.40004 4.49327 4.76610 4.84205 4.89699 5.09234 5.18394 5.30111 5.42596 5.46226 5.51334 5.61999 5.66174 5.87215 5.89297 5.96110 6.04421 6.09336 6.26139 6.39963 6.52029 6.62729 6.70638 6.78256 7.02760 7.42255 7.57989 7.67508 7.83747 8.25682 8.29285 9.06857 9.69778 10.27125 11.19527 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.002735 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.560852 B =10235.546129 C =10802.379137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.710 5.710 5 C 0.538 3.462 6 O -0.541 6.541 7 C -0.165 4.165 8 H 0.131 0.869 9 C -0.128 4.128 10 C -0.193 4.193 11 H 0.141 0.859 12 C 0.297 3.703 13 F -0.201 7.201 14 F -0.201 7.201 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.403 0.597 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.030 0.970 38 H 0.096 0.904 39 H 0.255 0.745 40 H 0.026 0.974 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 11.455 -15.398 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.361 5.361 5 C 0.323 3.677 6 O -0.419 6.419 7 C -0.187 4.187 8 H 0.149 0.851 9 C -0.166 4.166 10 C -0.212 4.212 11 H 0.159 0.841 12 C 0.243 3.757 13 F -0.182 7.182 14 F -0.182 7.182 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.215 1.215 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.238 0.762 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.048 0.952 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.694 11.970 -14.805 19.872 hybrid contribution -0.773 -0.730 0.587 1.215 sum -6.467 11.240 -14.218 19.244 Atomic orbital electron populations 1.22202 0.95754 1.03290 1.00652 1.22548 0.93566 0.90600 0.89612 1.21382 0.98854 0.89476 0.88754 1.45918 1.48459 1.10570 1.31148 1.19391 0.81258 0.82090 0.84934 1.90723 1.35887 1.68046 1.47228 1.22248 1.04899 0.90942 1.00589 0.85085 1.23130 0.91125 0.98227 1.04095 1.23360 1.02501 0.98022 0.97367 0.84146 1.21294 0.89572 0.73332 0.91488 1.92999 1.93522 1.34468 1.97210 1.93020 1.66246 1.77521 1.81422 1.21282 0.97869 0.83963 0.93536 1.44006 1.68633 1.04913 1.13889 1.19192 1.21386 1.12466 0.85300 0.91375 1.25062 0.97275 1.00058 0.97154 1.70022 1.29195 1.36833 1.18460 0.86219 0.80648 0.78056 0.81827 1.20250 1.21618 1.21460 1.21606 0.97585 0.95236 0.87354 1.23041 0.98284 0.83097 0.98760 1.87826 1.72919 1.25821 1.43806 0.93969 0.90746 0.91846 0.90708 0.89909 0.76155 0.86919 0.86849 0.86995 0.95238 0.88577 0.93452 0.95626 0.92017 0.90158 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 7.87 37.16 0.29 -2.32 16 2 C 0.08 1.40 0.78 -90.47 -0.07 1.33 16 3 C 0.14 2.31 4.85 -4.04 -0.02 2.29 16 4 N -0.71 -9.62 5.19 -60.30 -0.31 -9.93 16 5 C 0.54 7.42 7.61 -10.99 -0.08 7.33 16 6 O -0.54 -9.65 16.26 5.56 0.09 -9.56 16 7 C -0.17 -1.54 5.87 -91.74 -0.54 -2.08 16 8 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 9 C -0.13 -0.88 9.88 -26.73 -0.26 -1.15 16 10 C -0.19 -1.75 5.41 -90.58 -0.49 -2.24 16 11 H 0.14 1.58 7.67 -51.93 -0.40 1.18 16 12 C 0.30 2.37 5.50 37.16 0.20 2.57 16 13 F -0.20 -1.98 17.34 2.25 0.04 -1.94 16 14 F -0.20 -2.13 17.29 2.25 0.04 -2.09 16 15 C 0.16 3.65 4.10 -3.53 -0.01 3.64 16 16 N -0.59 -14.11 2.57 -171.82 -0.44 -14.55 16 17 C -0.25 -6.64 9.65 -15.06 -0.15 -6.79 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.34 11.14 55.49 0.62 -24.73 16 21 Si 0.90 20.95 29.58 -169.99 -5.03 15.92 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 2.18 6.73 -3.53 -0.02 2.16 16 26 C 0.05 0.77 6.60 37.31 0.25 1.02 16 27 O -0.38 -6.89 10.18 -35.23 -0.36 -7.25 16 28 H 0.04 0.55 6.57 -51.92 -0.34 0.21 16 29 H 0.07 1.33 6.12 -51.93 -0.32 1.01 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.40 4.63 6.99 -40.82 -0.29 4.35 16 34 H 0.11 0.43 8.05 -51.93 -0.42 0.01 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 0.46 7.90 -51.93 -0.41 0.05 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 2.42 6.16 -51.93 -0.32 2.10 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.77 6.25 -51.92 -0.32 0.45 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -31.73 355.67 -7.15 -38.87 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.16 Total: 4.13 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.99 Total: 5.78 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.14 Total: -49.21 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.27 Total: -16.81 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.73 -7.15 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107912781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.998 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds