Wall clock time and date at job start Fri Apr 10 2020 18:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.51421 * 2 1 4 4 N 1.46498 * 109.47208 * 305.10272 * 3 2 1 5 5 C 1.34772 * 119.99899 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00202 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00153 * 179.97438 * 5 4 3 8 8 H 1.09004 * 115.54854 * 325.71771 * 7 5 4 9 9 C 1.52999 * 117.50191 * 111.38533 * 7 5 4 10 10 C 1.53003 * 60.02982 * 107.50625 * 9 7 5 11 11 H 1.09005 * 117.50008 * 252.52293 * 10 9 7 12 12 C 1.53002 * 117.49944 * 107.50519 * 10 9 7 13 13 F 1.39901 * 109.47026 * 111.39187 * 12 10 9 14 14 F 1.39902 * 109.46789 * 231.38825 * 12 10 9 15 15 C 1.53296 * 109.50900 * 120.10239 * 2 1 3 16 16 N 1.47157 * 108.38509 * 67.67273 * 15 2 1 17 17 C 1.36933 * 120.98376 * 230.51113 * 16 15 2 18 18 H 1.07996 * 120.00162 * 153.33040 * 17 16 15 19 19 C 1.38814 * 119.99730 * 333.33354 * 17 16 15 20 20 N 1.31621 * 119.99854 * 343.53601 * 19 17 16 21 21 Si 1.86800 * 119.99932 * 163.54617 * 19 17 16 22 22 H 1.48495 * 109.47137 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47588 * 119.99634 * 21 19 17 24 24 H 1.48508 * 109.46892 * 239.99370 * 21 19 17 25 25 C 1.47159 * 118.03516 * 50.53227 * 16 15 2 26 26 C 1.53295 * 108.38484 * 309.46923 * 25 16 15 27 27 O 1.42958 * 109.55467 * 239.87392 * 2 1 3 28 28 H 1.09007 * 109.47020 * 59.99763 * 1 2 3 29 29 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47285 * 300.00178 * 1 2 3 31 31 H 1.08996 * 109.47038 * 185.09702 * 3 2 1 32 32 H 1.09004 * 109.46772 * 65.09936 * 3 2 1 33 33 H 0.97002 * 120.00146 * 359.97438 * 4 3 2 34 34 H 1.08993 * 117.50079 * 215.00084 * 9 7 5 35 35 H 1.09003 * 117.49914 * 0.02562 * 9 7 5 36 36 H 1.09002 * 109.46862 * 351.38943 * 12 10 9 37 37 H 1.08998 * 109.68125 * 187.39153 * 15 2 1 38 38 H 1.08994 * 109.68299 * 307.91533 * 15 2 1 39 39 H 0.97005 * 119.99741 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.67755 * 69.18701 * 25 16 15 41 41 H 1.08991 * 109.67961 * 189.73943 * 25 16 15 42 42 H 1.09000 * 109.51124 * 172.22739 * 26 25 16 43 43 H 1.09009 * 109.50946 * 292.37784 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4556 2.1677 -1.1300 5 6 1.7652 3.4638 -1.3317 6 8 2.5281 4.0295 -0.5776 7 6 1.1634 4.2101 -2.4944 8 1 0.9999 3.6213 -3.3971 9 6 0.1521 5.3138 -2.1783 10 6 1.5540 5.6797 -2.6700 11 1 2.2465 6.1064 -1.9443 12 6 1.6853 6.2103 -4.0990 13 9 2.0459 7.5616 -4.0633 14 9 2.6688 5.4830 -4.7779 15 6 2.0420 -0.7247 1.2501 16 7 1.6969 -2.1505 1.1339 17 6 1.0626 -2.8077 2.1542 18 1 0.4443 -3.6671 1.9410 19 6 1.2142 -2.3691 3.4624 20 7 2.1963 -1.5492 3.7720 21 14 0.0247 -2.9426 4.7836 22 1 -0.9822 -3.8530 4.1816 23 1 0.7730 -3.6636 5.8444 24 1 -0.6628 -1.7665 5.3750 25 6 2.0541 -2.8495 -0.1108 26 6 1.5416 -2.0212 -1.2946 27 8 2.0085 -0.6761 -1.1652 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1272 1.4426 -0.0913 32 1 1.7546 1.9290 0.9322 33 1 0.8457 1.7151 -1.7334 34 1 -0.6766 5.4512 -2.8729 35 1 -0.0777 5.5005 -1.1292 36 1 0.7317 6.1022 -4.6158 37 1 3.1239 -0.6136 1.3216 38 1 1.5701 -0.3035 2.1377 39 1 2.3025 -1.2430 4.6863 40 1 3.1374 -2.9521 -0.1763 41 1 1.5900 -3.8355 -0.1243 42 1 1.9141 -2.4479 -2.2259 43 1 0.4516 -2.0293 -1.2997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107912781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:23 Heat of formation + Delta-G solvation = -155.288862 kcal Electronic energy + Delta-G solvation = -27395.479554 eV Core-core repulsion = 23112.170563 eV Total energy + Delta-G solvation = -4283.308991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.86590 -47.91906 -41.31533 -40.42739 -37.77615 -36.51590 -35.93709 -33.26996 -33.12527 -29.59449 -28.76253 -28.00504 -27.28244 -25.03221 -24.64889 -22.85642 -22.40010 -21.28056 -20.27804 -19.07473 -18.88790 -18.12837 -17.91450 -17.49408 -17.38764 -16.83099 -16.70627 -16.12528 -16.06135 -15.61192 -15.52568 -15.23140 -14.83662 -14.72035 -14.59483 -14.38132 -14.29797 -13.94573 -13.82439 -13.48082 -13.17666 -13.10329 -12.92454 -12.81424 -12.54042 -12.43591 -12.11875 -11.98398 -11.95235 -11.86679 -11.72121 -11.57246 -11.18210 -10.99553 -10.74998 -10.50867 -10.16323 -8.72159 -7.90234 -5.37718 1.38729 1.45053 1.47473 1.57509 1.98668 2.47365 2.52194 2.77530 2.86807 3.24488 3.32119 3.42667 3.49556 3.60086 3.78223 3.91885 4.00487 4.06198 4.10535 4.24639 4.25743 4.42133 4.46356 4.54697 4.62980 4.71140 4.72643 4.79074 4.91427 4.97170 5.02407 5.04841 5.12214 5.20704 5.34856 5.36805 5.53067 5.61428 6.29068 6.37000 6.51551 7.06367 7.19168 7.75515 8.29752 9.15527 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.002735 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.560852 B =10235.546129 C =10802.379137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.149 3.851 4 N -0.698 5.698 5 C 0.532 3.468 6 O -0.591 6.591 7 C -0.170 4.170 8 H 0.165 0.835 9 C -0.097 4.097 10 C -0.209 4.209 11 H 0.106 0.894 12 C 0.295 3.705 13 F -0.216 7.216 14 F -0.219 7.219 15 C 0.168 3.832 16 N -0.607 5.607 17 C -0.257 4.257 18 H 0.075 0.925 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.290 1.290 25 C 0.100 3.900 26 C 0.053 3.947 27 O -0.386 6.386 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.417 0.583 34 H 0.160 0.840 35 H 0.103 0.897 36 H 0.166 0.834 37 H -0.011 1.011 38 H 0.066 0.934 39 H 0.250 0.750 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 11.462 -18.237 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.024 3.976 4 N -0.350 5.350 5 C 0.320 3.680 6 O -0.472 6.472 7 C -0.191 4.191 8 H 0.182 0.818 9 C -0.134 4.134 10 C -0.228 4.228 11 H 0.124 0.876 12 C 0.242 3.758 13 F -0.197 7.197 14 F -0.200 7.200 15 C 0.041 3.959 16 N -0.331 5.331 17 C -0.387 4.387 18 H 0.092 0.908 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.186 1.186 23 H -0.223 1.223 24 H -0.217 1.217 25 C -0.025 4.025 26 C -0.024 4.024 27 O -0.306 6.306 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.256 0.744 34 H 0.178 0.822 35 H 0.121 0.879 36 H 0.183 0.817 37 H 0.007 0.993 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.773 11.953 -17.702 23.091 hybrid contribution 0.268 -0.778 1.475 1.689 sum -8.505 11.176 -16.227 21.460 Atomic orbital electron populations 1.22105 0.93576 1.02978 1.02296 1.22178 0.94919 0.90351 0.87278 1.21005 0.97624 0.89263 0.89749 1.45726 1.48358 1.10606 1.30290 1.20249 0.80365 0.81821 0.85556 1.90707 1.38150 1.68993 1.49396 1.22257 1.06257 0.90971 0.99617 0.81803 1.23351 0.90968 0.94415 1.04706 1.23311 1.03910 0.97790 0.97819 0.87611 1.21801 0.90883 0.72115 0.90966 1.92968 1.93802 1.35683 1.97234 1.92983 1.67431 1.77931 1.81698 1.21046 0.95258 0.84458 0.95148 1.44267 1.68619 1.05510 1.14724 1.19543 1.20893 1.12273 0.85985 0.90772 1.25824 0.98798 1.00748 0.99280 1.70196 1.31135 1.38617 1.18400 0.85210 0.78762 0.77517 0.78985 1.18630 1.22348 1.21663 1.21837 0.96949 0.96447 0.87256 1.23114 0.99234 0.81688 0.98383 1.87836 1.73332 1.26493 1.42916 0.89941 0.91946 0.92565 0.93052 0.91080 0.74447 0.82232 0.87851 0.81667 0.99295 0.91521 0.94109 0.97190 0.90888 0.86482 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 7.87 71.98 0.57 -4.07 16 2 C 0.09 3.36 0.78 -10.69 -0.01 3.35 16 3 C 0.15 5.07 4.85 86.38 0.42 5.48 16 4 N -0.70 -17.99 5.19 -463.07 -2.41 -20.39 16 5 C 0.53 14.29 7.61 87.66 0.67 14.96 16 6 O -0.59 -21.88 16.26 -3.03 -0.05 -21.93 16 7 C -0.17 -2.68 5.87 -11.52 -0.07 -2.75 16 8 H 0.16 1.53 8.14 -2.38 -0.02 1.51 16 9 C -0.10 -0.97 9.88 30.59 0.30 -0.67 16 10 C -0.21 -3.41 5.41 -10.77 -0.06 -3.47 16 11 H 0.11 2.48 7.67 -2.38 -0.02 2.46 16 12 C 0.30 3.89 5.50 71.98 0.40 4.29 16 13 F -0.22 -3.94 17.34 44.97 0.78 -3.16 16 14 F -0.22 -4.24 17.29 44.97 0.78 -3.46 16 15 C 0.17 7.99 4.10 86.35 0.35 8.34 16 16 N -0.61 -29.42 2.57 -697.53 -1.79 -31.21 16 17 C -0.26 -13.54 9.65 84.03 0.81 -12.72 16 18 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 19 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 20 N -0.94 -55.02 11.14 21.65 0.24 -54.78 16 21 Si 0.97 43.67 29.58 68.60 2.03 45.70 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 25 C 0.10 3.97 6.73 86.35 0.58 4.55 16 26 C 0.05 1.63 6.60 72.08 0.48 2.11 16 27 O -0.39 -13.20 10.18 -148.98 -1.52 -14.72 16 28 H 0.08 1.84 6.57 -2.38 -0.02 1.82 16 29 H 0.06 2.08 6.12 -2.39 -0.01 2.07 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.42 8.22 6.99 -92.71 -0.65 7.57 16 34 H 0.16 0.16 8.05 -2.39 -0.02 0.14 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.17 0.47 7.90 -2.39 -0.02 0.45 16 37 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H 0.07 3.56 6.16 -2.39 -0.01 3.54 16 39 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 40 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 42 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.06 1.81 6.25 -2.38 -0.01 1.79 16 Total: -1.00 -74.45 355.67 3.31 -71.13 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.39 Total: 15.79 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 4.86 Total: 17.04 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.96 Total: -106.39 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.57 Total: -36.65 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.56 Total: -6.62 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -74.45 3.31 -71.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107912781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.158 kcal (2) G-P(sol) polarization free energy of solvation -74.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds