Wall clock time and date at job start Fri Apr 10 2020 18:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.51285 * 2 1 4 4 N 1.46504 * 109.47265 * 59.99741 * 3 2 1 5 5 C 1.34779 * 119.99983 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99759 * 180.02562 * 5 4 3 8 8 C 1.52998 * 115.55030 * 34.41668 * 7 5 4 9 9 F 1.39910 * 109.46856 * 85.58570 * 8 7 5 10 10 F 1.39900 * 109.47232 * 205.58085 * 8 7 5 11 11 C 1.53008 * 117.49919 * 248.74838 * 7 5 4 12 12 C 1.52997 * 117.49735 * 180.08915 * 7 5 4 13 13 C 1.53293 * 109.51260 * 239.89935 * 2 1 3 14 14 N 1.47152 * 108.38249 * 292.32423 * 13 2 1 15 15 C 1.36938 * 120.98217 * 129.44539 * 14 13 2 16 16 H 1.08003 * 120.00473 * 206.23936 * 15 14 13 17 17 C 1.38812 * 119.99853 * 26.23845 * 15 14 13 18 18 N 1.31627 * 120.00120 * 16.91233 * 17 15 14 19 19 Si 1.86798 * 120.00281 * 196.91523 * 17 15 14 20 20 H 1.48499 * 109.47013 * 59.99997 * 19 17 15 21 21 H 1.48499 * 109.47564 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46857 * 300.00093 * 19 17 15 23 23 C 1.47156 * 118.03891 * 309.46663 * 14 13 2 24 24 C 1.53295 * 108.38046 * 50.53269 * 23 14 13 25 25 O 1.42946 * 109.26793 * 307.72230 * 24 23 14 26 26 H 1.08998 * 109.46790 * 60.00424 * 1 2 3 27 27 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47237 * 300.00000 * 1 2 3 29 29 H 1.09000 * 109.46913 * 299.99840 * 3 2 1 30 30 H 1.08997 * 109.47442 * 180.02562 * 3 2 1 31 31 H 0.96992 * 119.99620 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.47407 * 325.58594 * 8 7 5 33 33 H 1.08995 * 117.49563 * 359.97438 * 11 7 5 34 34 H 1.08992 * 117.49625 * 145.02176 * 11 7 5 35 35 H 1.08997 * 117.49983 * 214.97819 * 12 7 5 36 36 H 1.08998 * 117.50161 * 0.02562 * 12 7 5 37 37 H 1.08992 * 109.68678 * 52.05193 * 13 2 1 38 38 H 1.09003 * 109.68221 * 172.56938 * 13 2 1 39 39 H 0.97000 * 119.99964 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.68195 * 170.25861 * 23 14 13 41 41 H 1.09001 * 109.67861 * 290.81436 * 23 14 13 42 42 H 1.08997 * 109.50954 * 67.62819 * 24 23 14 43 43 H 1.08999 * 109.51033 * 187.72149 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1331 1.1962 5 6 1.8802 3.4231 1.4097 6 8 2.5779 4.0120 0.6113 7 6 1.3788 4.1337 2.6404 8 6 1.2584 3.2704 3.8978 9 9 2.4919 3.2318 4.5568 10 9 0.2922 3.8179 4.7486 11 6 0.3435 5.2430 2.4432 12 6 1.7828 5.5978 2.8246 13 6 2.0420 -0.7246 -1.2500 14 7 1.6971 -2.1504 -1.1339 15 6 1.0620 -2.8074 -2.1538 16 1 0.4494 -3.6711 -1.9412 17 6 1.2055 -2.3632 -3.4611 18 7 2.1870 -1.5438 -3.7738 19 14 0.0058 -2.9284 -4.7767 20 1 -1.3697 -2.5102 -4.4048 21 1 0.3739 -2.3158 -6.0784 22 1 0.0592 -4.4079 -4.8925 23 6 2.0543 -2.8494 0.1108 24 6 1.5417 -2.0211 1.2945 25 8 2.0075 -0.6758 1.1658 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6781 1.9562 -0.8900 30 1 3.1310 1.4414 -0.0005 31 1 0.9955 1.6621 1.8348 32 1 0.9644 2.2590 3.6174 33 1 0.0254 5.4589 1.4233 34 1 -0.4230 5.3579 3.2095 35 1 1.9626 5.9461 3.8417 36 1 2.4110 6.0472 2.0555 37 1 1.5699 -0.3038 -2.1377 38 1 3.1239 -0.6129 -1.3219 39 1 2.2875 -1.2337 -4.6874 40 1 1.5901 -3.8355 0.1243 41 1 3.1375 -2.9520 0.1763 42 1 0.4517 -2.0293 1.2997 43 1 1.9133 -2.4483 2.2259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107944399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:29 Heat of formation + Delta-G solvation = -127.550587 kcal Electronic energy + Delta-G solvation = -28274.928148 eV Core-core repulsion = 23992.821978 eV Total energy + Delta-G solvation = -4282.106169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.28109 -47.25437 -40.25197 -39.05304 -36.70003 -35.06348 -34.41198 -31.92839 -31.31095 -28.21272 -27.98165 -26.47482 -25.67503 -23.33721 -23.07713 -22.86558 -21.21859 -19.97388 -18.92721 -18.42093 -17.46065 -17.40638 -17.08830 -16.01681 -15.97423 -15.52012 -15.22305 -14.85184 -14.58565 -14.31592 -14.11463 -14.05033 -13.86184 -13.61821 -13.57852 -13.14140 -12.96067 -12.85426 -12.59832 -12.04027 -11.99750 -11.75033 -11.65399 -11.26116 -11.07951 -10.95685 -10.87920 -10.77006 -10.73144 -10.37771 -10.32339 -10.11953 -9.93682 -9.60684 -9.14101 -9.00036 -8.58513 -6.79718 -5.89443 -3.32975 2.28493 2.97585 3.13567 3.31300 3.37938 3.38323 3.47161 3.85409 3.96173 4.15547 4.32429 4.39128 4.53232 4.74904 4.89276 5.05409 5.24069 5.27565 5.28946 5.38827 5.45258 5.53635 5.59845 5.78044 5.85076 5.86899 5.92195 6.00552 6.06808 6.22406 6.34361 6.45667 6.58395 6.68349 6.76407 7.00743 7.39714 7.43891 7.65751 7.79823 8.11541 8.27920 9.05726 9.68762 10.25724 11.18617 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.003413 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.276349 B = 8202.830937 C = 8775.405883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 C 0.139 3.861 4 N -0.712 5.712 5 C 0.554 3.446 6 O -0.529 6.529 7 C -0.238 4.238 8 C 0.305 3.695 9 F -0.194 7.194 10 F -0.198 7.198 11 C -0.129 4.129 12 C -0.124 4.124 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.257 4.257 16 H 0.068 0.932 17 C 0.005 3.995 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.282 1.282 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.385 6.385 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.399 0.601 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.257 0.743 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 10.018 14.541 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.016 3.984 4 N -0.364 5.364 5 C 0.338 3.662 6 O -0.406 6.406 7 C -0.242 4.242 8 C 0.251 3.749 9 F -0.175 7.175 10 F -0.179 7.179 11 C -0.166 4.166 12 C -0.161 4.161 13 C 0.034 3.966 14 N -0.314 5.314 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.194 4.194 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.305 6.305 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.235 0.765 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.162 10.551 13.917 17.953 hybrid contribution -0.911 -0.851 -0.484 1.337 sum -5.073 9.700 13.433 17.328 Atomic orbital electron populations 1.22214 0.95676 1.03370 1.00701 1.22573 0.93599 0.90508 0.89741 1.21443 1.00132 0.89996 0.86826 1.45964 1.53045 1.11180 1.26174 1.18878 0.80130 0.81886 0.85302 1.90728 1.37319 1.66112 1.46423 1.22642 1.12564 0.93568 0.95455 1.20963 0.73316 0.97709 0.82925 1.93032 1.44312 1.97497 1.82645 1.92975 1.63570 1.88131 1.73231 1.23169 0.92993 0.95762 1.04695 1.23065 0.97925 0.90777 1.04374 1.21282 0.97875 0.83976 0.93508 1.43985 1.68605 1.04887 1.13904 1.19121 1.21810 1.12275 0.85403 0.91425 1.25035 0.97238 1.00035 0.97078 1.70004 1.29150 1.36712 1.18665 0.86357 0.80959 0.78380 0.81009 1.20967 1.21508 1.20824 1.21597 0.97599 0.95231 0.87305 1.23046 0.98322 0.83015 0.98839 1.87804 1.73088 1.25880 1.43693 0.91775 0.90668 0.94081 0.89753 0.90497 0.76517 0.86734 0.87061 0.86573 0.87349 0.86312 0.88500 0.95193 0.93330 0.91995 0.95599 0.93358 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 7.92 37.16 0.29 -2.32 16 2 C 0.08 1.36 0.76 -90.47 -0.07 1.29 16 3 C 0.14 2.27 4.82 -4.04 -0.02 2.25 16 4 N -0.71 -9.66 5.05 -60.29 -0.30 -9.96 16 5 C 0.55 7.76 7.39 -10.99 -0.08 7.68 16 6 O -0.53 -9.30 16.26 5.56 0.09 -9.21 16 7 C -0.24 -2.55 2.36 -155.66 -0.37 -2.92 16 8 C 0.30 3.03 5.27 37.16 0.20 3.23 16 9 F -0.19 -2.33 17.29 2.25 0.04 -2.29 16 10 F -0.20 -1.94 15.91 2.25 0.04 -1.90 16 11 C -0.13 -1.10 9.63 -26.69 -0.26 -1.35 16 12 C -0.12 -1.18 9.69 -26.69 -0.26 -1.44 16 13 C 0.16 3.61 4.11 -3.53 -0.01 3.60 16 14 N -0.59 -13.98 2.57 -171.83 -0.44 -14.43 16 15 C -0.26 -6.68 9.65 -15.06 -0.15 -6.83 16 16 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 17 C 0.01 0.14 4.95 -17.43 -0.09 0.05 16 18 N -0.90 -25.18 11.14 55.49 0.62 -24.56 16 19 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.11 2.17 6.74 -3.53 -0.02 2.15 16 24 C 0.05 0.75 6.60 37.31 0.25 1.00 16 25 O -0.39 -6.75 9.98 -35.23 -0.35 -7.10 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 28 H 0.04 0.54 6.87 -51.93 -0.36 0.18 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.40 4.63 5.50 -40.82 -0.22 4.41 16 32 H 0.12 0.94 6.39 -51.93 -0.33 0.61 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.12 0.82 7.22 -51.93 -0.37 0.44 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.12 1.24 7.67 -51.93 -0.40 0.84 16 37 H 0.10 2.41 6.13 -51.93 -0.32 2.10 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.77 6.26 -51.93 -0.32 0.44 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -30.39 350.42 -6.64 -37.03 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.99 Total: 4.93 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.59 Total: 6.38 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.13 Total: -48.95 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.26 Total: -16.31 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.39 -6.64 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107944399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.521 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds