Wall clock time and date at job start Fri Apr 10 2020 18:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.51285 * 2 1 4 4 N 1.46504 * 109.47265 * 59.99741 * 3 2 1 5 5 C 1.34779 * 119.99983 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99759 * 180.02562 * 5 4 3 8 8 C 1.52998 * 115.55030 * 34.41668 * 7 5 4 9 9 F 1.39910 * 109.46856 * 85.58570 * 8 7 5 10 10 F 1.39900 * 109.47232 * 205.58085 * 8 7 5 11 11 C 1.53008 * 117.49919 * 248.74838 * 7 5 4 12 12 C 1.52997 * 117.49735 * 180.08915 * 7 5 4 13 13 C 1.53293 * 109.51260 * 239.89935 * 2 1 3 14 14 N 1.47152 * 108.38249 * 292.32423 * 13 2 1 15 15 C 1.36938 * 120.98217 * 129.44539 * 14 13 2 16 16 H 1.08003 * 120.00473 * 206.23936 * 15 14 13 17 17 C 1.38812 * 119.99853 * 26.23845 * 15 14 13 18 18 N 1.31627 * 120.00120 * 16.91233 * 17 15 14 19 19 Si 1.86798 * 120.00281 * 196.91523 * 17 15 14 20 20 H 1.48499 * 109.47013 * 59.99997 * 19 17 15 21 21 H 1.48499 * 109.47564 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46857 * 300.00093 * 19 17 15 23 23 C 1.47156 * 118.03891 * 309.46663 * 14 13 2 24 24 C 1.53295 * 108.38046 * 50.53269 * 23 14 13 25 25 O 1.42946 * 109.26793 * 307.72230 * 24 23 14 26 26 H 1.08998 * 109.46790 * 60.00424 * 1 2 3 27 27 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47237 * 300.00000 * 1 2 3 29 29 H 1.09000 * 109.46913 * 299.99840 * 3 2 1 30 30 H 1.08997 * 109.47442 * 180.02562 * 3 2 1 31 31 H 0.96992 * 119.99620 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.47407 * 325.58594 * 8 7 5 33 33 H 1.08995 * 117.49563 * 359.97438 * 11 7 5 34 34 H 1.08992 * 117.49625 * 145.02176 * 11 7 5 35 35 H 1.08997 * 117.49983 * 214.97819 * 12 7 5 36 36 H 1.08998 * 117.50161 * 0.02562 * 12 7 5 37 37 H 1.08992 * 109.68678 * 52.05193 * 13 2 1 38 38 H 1.09003 * 109.68221 * 172.56938 * 13 2 1 39 39 H 0.97000 * 119.99964 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.68195 * 170.25861 * 23 14 13 41 41 H 1.09001 * 109.67861 * 290.81436 * 23 14 13 42 42 H 1.08997 * 109.50954 * 67.62819 * 24 23 14 43 43 H 1.08999 * 109.51033 * 187.72149 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5532 2.1331 1.1962 5 6 1.8802 3.4231 1.4097 6 8 2.5779 4.0120 0.6113 7 6 1.3788 4.1337 2.6404 8 6 1.2584 3.2704 3.8978 9 9 2.4919 3.2318 4.5568 10 9 0.2922 3.8179 4.7486 11 6 0.3435 5.2430 2.4432 12 6 1.7828 5.5978 2.8246 13 6 2.0420 -0.7246 -1.2500 14 7 1.6971 -2.1504 -1.1339 15 6 1.0620 -2.8074 -2.1538 16 1 0.4494 -3.6711 -1.9412 17 6 1.2055 -2.3632 -3.4611 18 7 2.1870 -1.5438 -3.7738 19 14 0.0058 -2.9284 -4.7767 20 1 -1.3697 -2.5102 -4.4048 21 1 0.3739 -2.3158 -6.0784 22 1 0.0592 -4.4079 -4.8925 23 6 2.0543 -2.8494 0.1108 24 6 1.5417 -2.0211 1.2945 25 8 2.0075 -0.6758 1.1658 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6781 1.9562 -0.8900 30 1 3.1310 1.4414 -0.0005 31 1 0.9955 1.6621 1.8348 32 1 0.9644 2.2590 3.6174 33 1 0.0254 5.4589 1.4233 34 1 -0.4230 5.3579 3.2095 35 1 1.9626 5.9461 3.8417 36 1 2.4110 6.0472 2.0555 37 1 1.5699 -0.3038 -2.1377 38 1 3.1239 -0.6129 -1.3219 39 1 2.2875 -1.2337 -4.6874 40 1 1.5901 -3.8355 0.1243 41 1 3.1375 -2.9520 0.1763 42 1 0.4517 -2.0293 1.2997 43 1 1.9133 -2.4483 2.2259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107944399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:28 Heat of formation + Delta-G solvation = -147.068844 kcal Electronic energy + Delta-G solvation = -28275.774523 eV Core-core repulsion = 23992.821978 eV Total energy + Delta-G solvation = -4282.952545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.06676 -48.05233 -41.42614 -40.46438 -37.62698 -36.55768 -35.99341 -33.33405 -33.18288 -29.61201 -29.08190 -27.99074 -27.13630 -25.01374 -24.22524 -23.57553 -22.76154 -21.06486 -20.27452 -19.48613 -18.91203 -18.26853 -18.19658 -17.46041 -17.08051 -16.77251 -16.75242 -16.14236 -15.93789 -15.63525 -15.58238 -15.23529 -15.05451 -14.79480 -14.67395 -14.46897 -14.36340 -14.00267 -13.81009 -13.47441 -13.19251 -12.92578 -12.79900 -12.75590 -12.53491 -12.47515 -12.43935 -12.18545 -11.96805 -11.86781 -11.77383 -11.53078 -11.24937 -11.04574 -10.75695 -10.49855 -10.25771 -8.71910 -7.89703 -5.36420 1.25539 1.47102 1.48881 1.55782 1.86689 2.33325 2.48369 2.66682 2.78013 3.09021 3.17489 3.25000 3.48557 3.56838 3.61572 3.91082 3.97511 4.01439 4.10160 4.12732 4.41708 4.45795 4.50853 4.55445 4.61401 4.64138 4.71312 4.77749 4.84943 4.95902 5.03967 5.08113 5.11166 5.20365 5.23898 5.36324 5.53468 5.61671 6.28853 6.34207 6.36253 7.01877 7.07260 7.76453 8.30187 9.15837 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.003413 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.276349 B = 8202.830937 C = 8775.405883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 C 0.149 3.851 4 N -0.701 5.701 5 C 0.554 3.446 6 O -0.571 6.571 7 C -0.248 4.248 8 C 0.308 3.692 9 F -0.207 7.207 10 F -0.194 7.194 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.168 3.832 14 N -0.607 5.607 15 C -0.262 4.262 16 H 0.074 0.926 17 C -0.047 4.047 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.276 1.276 23 C 0.101 3.899 24 C 0.053 3.947 25 O -0.385 6.385 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.412 0.588 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.068 0.932 38 H -0.008 1.008 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.011 0.989 42 H 0.063 0.937 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 10.091 16.841 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 C 0.024 3.976 4 N -0.353 5.353 5 C 0.340 3.660 6 O -0.450 6.450 7 C -0.253 4.253 8 C 0.254 3.746 9 F -0.189 7.189 10 F -0.175 7.175 11 C -0.144 4.144 12 C -0.165 4.165 13 C 0.041 3.959 14 N -0.331 5.331 15 C -0.392 4.392 16 H 0.091 0.909 17 C -0.243 4.243 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.202 1.202 23 C -0.024 4.024 24 C -0.025 4.025 25 O -0.305 6.305 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.250 0.750 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.157 0.843 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.010 0.990 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.081 0.919 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.399 10.599 16.276 20.450 hybrid contribution -0.156 -0.911 -1.171 1.492 sum -6.555 9.688 15.106 19.105 Atomic orbital electron populations 1.22124 0.93739 1.03001 1.02260 1.22205 0.94786 0.90382 0.87479 1.21105 0.98902 0.89579 0.87977 1.45767 1.52962 1.11186 1.25396 1.19388 0.79178 0.81575 0.85831 1.90715 1.39140 1.66966 1.48197 1.22536 1.14503 0.93925 0.94301 1.21066 0.72830 0.98441 0.82272 1.93010 1.45384 1.97558 1.82919 1.92983 1.63245 1.88210 1.73042 1.23303 0.92694 0.92936 1.05462 1.23139 0.98780 0.89700 1.04894 1.21049 0.95388 0.84388 0.95092 1.44241 1.68608 1.05527 1.14706 1.19482 1.21378 1.12152 0.86140 0.90862 1.25767 0.98719 1.00680 0.99099 1.70178 1.31027 1.38460 1.18526 0.85368 0.79197 0.77964 0.78092 1.19998 1.22388 1.20217 1.21822 0.96980 0.96392 0.87219 1.23114 0.99215 0.81684 0.98465 1.87817 1.73433 1.26466 1.42775 0.92457 0.91919 0.90272 0.90420 0.92544 0.74983 0.84626 0.87004 0.84332 0.85818 0.87688 0.91390 0.99036 0.94063 0.90992 0.97098 0.91905 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 7.92 71.98 0.57 -4.10 16 2 C 0.09 3.24 0.76 -10.70 -0.01 3.23 16 3 C 0.15 4.89 4.82 86.38 0.42 5.31 16 4 N -0.70 -17.96 5.05 -463.05 -2.34 -20.29 16 5 C 0.55 14.96 7.39 87.66 0.65 15.61 16 6 O -0.57 -20.25 16.26 -3.04 -0.05 -20.30 16 7 C -0.25 -4.79 2.36 -52.93 -0.13 -4.92 16 8 C 0.31 5.21 5.27 71.98 0.38 5.59 16 9 F -0.21 -4.54 17.29 44.97 0.78 -3.77 16 10 F -0.19 -3.11 15.91 44.97 0.72 -2.40 16 11 C -0.11 -1.52 9.63 30.62 0.29 -1.23 16 12 C -0.13 -2.22 9.69 30.62 0.30 -1.92 16 13 C 0.17 7.83 4.11 86.35 0.36 8.19 16 14 N -0.61 -29.06 2.57 -697.54 -1.79 -30.86 16 15 C -0.26 -13.70 9.65 84.03 0.81 -12.89 16 16 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 17 C -0.05 -2.54 4.95 84.86 0.42 -2.12 16 18 N -0.94 -54.31 11.14 21.65 0.24 -54.07 16 19 Si 0.97 43.34 29.59 68.60 2.03 45.37 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.10 3.95 6.74 86.35 0.58 4.53 16 24 C 0.05 1.58 6.60 72.08 0.48 2.06 16 25 O -0.39 -12.77 9.98 -148.98 -1.49 -14.25 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 2.09 6.12 -2.39 -0.01 2.08 16 28 H 0.08 1.79 6.87 -2.39 -0.02 1.77 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.41 8.29 5.50 -92.71 -0.51 7.78 16 32 H 0.14 1.71 6.39 -2.39 -0.02 1.69 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.14 1.39 7.22 -2.39 -0.02 1.38 16 35 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 2.14 7.67 -2.39 -0.02 2.12 16 37 H 0.07 3.56 6.13 -2.39 -0.01 3.55 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.06 1.76 6.26 -2.39 -0.01 1.75 16 43 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -67.95 350.42 3.74 -64.20 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.53 Total: 19.01 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 5.11 Total: 17.35 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -3.89 Total: -105.22 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.54 Total: -34.55 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 1.49 Total: -6.16 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.95 3.74 -64.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107944399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.865 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds