Wall clock time and date at job start Fri Apr 10 2020 18:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.55234 * 2 1 4 4 N 1.46504 * 109.47082 * 305.12104 * 3 2 1 5 5 C 1.34771 * 120.00328 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00290 * 180.02562 * 5 4 3 8 8 H 1.09002 * 112.84687 * 311.20373 * 7 5 4 9 9 C 1.53775 * 113.61628 * 180.02562 * 7 5 4 10 10 C 1.53776 * 87.08146 * 220.01943 * 9 7 5 11 11 C 1.53777 * 113.61250 * 82.50076 * 7 5 4 12 12 F 1.39898 * 113.61592 * 254.53025 * 11 7 5 13 13 F 1.39904 * 113.61568 * 25.43875 * 11 7 5 14 14 C 1.53293 * 109.51057 * 120.12202 * 2 1 3 15 15 N 1.47152 * 108.41769 * 67.63942 * 14 2 1 16 16 C 1.36932 * 120.98645 * 230.49193 * 15 14 2 17 17 H 1.08000 * 120.00187 * 153.83504 * 16 15 14 18 18 C 1.38817 * 119.99883 * 333.84068 * 16 15 14 19 19 N 1.31621 * 119.99841 * 158.68074 * 18 16 15 20 20 Si 1.86798 * 119.99999 * 338.67277 * 18 16 15 21 21 H 1.48500 * 109.46909 * 91.87111 * 20 18 16 22 22 H 1.48501 * 109.47217 * 211.86820 * 20 18 16 23 23 H 1.48499 * 109.47362 * 331.87226 * 20 18 16 24 24 C 1.47152 * 118.03135 * 50.51701 * 15 14 2 25 25 C 1.53299 * 108.38567 * 309.46527 * 24 15 14 26 26 O 1.42958 * 109.22366 * 52.30450 * 25 24 15 27 27 H 1.09000 * 109.46918 * 299.87915 * 1 2 3 28 28 H 1.09000 * 109.46797 * 59.87769 * 1 2 3 29 29 H 1.08999 * 109.46886 * 179.87479 * 1 2 3 30 30 H 1.08997 * 109.47523 * 65.12055 * 3 2 1 31 31 H 1.08998 * 109.47282 * 185.12679 * 3 2 1 32 32 H 0.97001 * 119.99665 * 0.02562 * 4 3 2 33 33 H 1.08996 * 113.61307 * 334.56967 * 9 7 5 34 34 H 1.09005 * 113.61169 * 105.46818 * 9 7 5 35 35 H 1.09003 * 113.61733 * 139.98225 * 10 9 7 36 36 H 1.09000 * 113.61524 * 270.79761 * 10 9 7 37 37 H 1.09002 * 109.68389 * 307.90161 * 14 2 1 38 38 H 1.09004 * 109.68229 * 187.38558 * 14 2 1 39 39 H 0.96995 * 119.99867 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.68148 * 69.18598 * 24 15 14 41 41 H 1.09000 * 109.68400 * 189.73773 * 24 15 14 42 42 H 1.08995 * 109.50732 * 172.22701 * 25 24 15 43 43 H 1.08997 * 109.51020 * 292.32466 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4567 2.1679 -1.1298 5 6 1.7670 3.4638 -1.3316 6 8 2.5312 4.0288 -0.5781 7 6 1.1644 4.2109 -2.4934 8 1 1.2486 3.6682 -3.4350 9 6 1.6184 5.6772 -2.5851 10 6 0.1697 6.0196 -2.9706 11 6 -0.2493 4.7476 -2.2140 12 9 -1.2606 4.0224 -2.8533 13 9 -0.5088 4.9631 -0.8562 14 6 2.0420 -0.7251 1.2498 15 7 1.6967 -2.1509 1.1343 16 6 1.0630 -2.8077 2.1551 17 1 0.4509 -3.6720 1.9435 18 6 1.2071 -2.3625 3.4620 19 7 0.3138 -2.6906 4.3713 20 14 2.6689 -1.2979 3.9302 21 1 2.3040 0.1344 3.7875 22 1 3.0510 -1.5734 5.3386 23 1 3.8138 -1.6084 3.0369 24 6 2.0530 -2.8501 -0.1105 25 6 1.5397 -2.0221 -1.2941 26 8 2.0070 -0.6771 -1.1655 27 1 -0.3633 0.5120 0.8911 28 1 -0.3633 0.5157 -0.8889 29 1 -0.3633 -1.0277 -0.0022 30 1 1.7563 1.9289 0.9322 31 1 3.1282 1.4416 -0.0918 32 1 0.8458 1.7159 -1.7326 33 1 1.9272 6.0992 -1.6288 34 1 2.3380 5.8624 -3.3827 35 1 -0.1975 6.9395 -2.5156 36 1 -0.0194 5.9732 -4.0431 37 1 1.5704 -0.3040 2.1377 38 1 3.1240 -0.6141 1.3213 39 1 0.4147 -2.3798 5.2846 40 1 3.1361 -2.9529 -0.1767 41 1 1.5887 -3.8362 -0.1235 42 1 1.9115 -2.4491 -2.2255 43 1 0.4498 -2.0308 -1.2991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108016653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:31 Heat of formation + Delta-G solvation = -123.511156 kcal Electronic energy + Delta-G solvation = -28466.472072 eV Core-core repulsion = 24184.541065 eV Total energy + Delta-G solvation = -4281.931007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.13257 -47.45741 -40.26254 -39.27466 -37.30208 -35.16014 -34.56727 -32.03597 -31.61072 -28.53854 -28.07055 -26.45788 -25.46666 -25.16838 -23.63430 -21.64325 -20.93178 -20.18016 -19.16698 -18.32184 -17.81720 -17.16797 -16.70730 -16.49507 -16.16203 -15.60687 -15.40981 -14.83372 -14.61140 -14.52842 -14.23455 -14.08170 -13.98981 -13.86331 -13.69839 -13.52498 -13.23070 -12.71239 -12.39106 -12.37608 -12.11752 -11.89662 -11.78821 -11.57632 -11.55714 -11.41400 -11.14646 -11.09030 -10.88063 -10.41887 -10.24062 -9.98206 -9.74177 -9.55052 -9.42946 -9.05977 -8.59601 -7.06430 -6.03330 -3.39680 2.27578 2.98621 3.15372 3.27257 3.41250 3.45191 3.47377 3.86610 3.96221 3.99289 4.07050 4.45556 4.70260 4.71227 4.85346 5.04302 5.08871 5.13682 5.18980 5.21273 5.28142 5.38035 5.39041 5.70852 5.73370 5.76505 5.79396 5.87655 5.96755 6.03222 6.20796 6.25092 6.38905 6.42395 6.47787 6.58910 6.73267 7.41875 7.59177 7.80405 8.09498 8.22711 8.80485 9.61547 9.97683 11.12121 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003730 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.385105 B = 7505.481470 C = 7854.042607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 C 0.134 3.866 4 N -0.711 5.711 5 C 0.520 3.480 6 O -0.530 6.530 7 C -0.167 4.167 8 H 0.141 0.859 9 C -0.112 4.112 10 C -0.164 4.164 11 C 0.270 3.730 12 F -0.186 7.186 13 F -0.169 7.169 14 C 0.110 3.890 15 N -0.603 5.603 16 C -0.263 4.263 17 H 0.088 0.912 18 C 0.027 3.973 19 N -0.903 5.903 20 Si 0.875 3.125 21 H -0.286 1.286 22 H -0.300 1.300 23 H -0.270 1.270 24 C 0.112 3.888 25 C 0.043 3.957 26 O -0.381 6.381 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.404 0.596 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 14.553 -18.045 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C 0.011 3.989 4 N -0.363 5.363 5 C 0.305 3.695 6 O -0.407 6.407 7 C -0.190 4.190 8 H 0.159 0.841 9 C -0.150 4.150 10 C -0.202 4.202 11 C 0.233 3.767 12 F -0.167 7.167 13 F -0.150 7.150 14 C -0.017 4.017 15 N -0.327 5.327 16 C -0.391 4.391 17 H 0.106 0.894 18 C -0.172 4.172 19 N -0.546 5.546 20 Si 0.705 3.295 21 H -0.213 1.213 22 H -0.228 1.228 23 H -0.195 1.195 24 C -0.013 4.013 25 C -0.034 4.034 26 O -0.300 6.300 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.505 14.966 -17.394 22.952 hybrid contribution 0.142 -0.055 0.429 0.455 sum 0.646 14.912 -16.966 22.597 Atomic orbital electron populations 1.22229 0.94789 1.03950 1.01252 1.22249 0.94230 0.90323 0.88457 1.21418 0.98860 0.89399 0.89256 1.45977 1.48405 1.10799 1.31076 1.19918 0.81860 0.82099 0.85667 1.90713 1.35615 1.67727 1.46639 1.24113 0.94202 0.99648 1.00990 0.84115 1.22749 0.96026 0.91386 1.04795 1.24076 0.96817 0.96901 1.02383 1.21974 0.84025 0.93813 0.76889 1.93045 1.63572 1.79413 1.80651 1.93085 1.94780 1.95011 1.32135 1.21889 0.98045 0.85893 0.95849 1.44304 1.69252 1.03779 1.15415 1.18877 1.22389 1.13114 0.84681 0.89398 1.25234 0.97814 0.98570 0.95596 1.69830 1.33532 1.47838 1.03372 0.87082 0.85471 0.79814 0.77125 1.21341 1.22792 1.19498 1.21633 0.97791 0.95670 0.86241 1.23089 0.98877 0.82642 0.98820 1.87837 1.72880 1.26080 1.43197 0.91517 0.93461 0.90157 0.89849 0.90499 0.75994 0.87280 0.88567 0.88227 0.86658 0.89894 0.94694 0.92605 0.95139 0.90996 0.89613 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 7.87 37.16 0.29 -2.48 16 2 C 0.09 1.56 0.78 -90.47 -0.07 1.49 16 3 C 0.13 2.19 4.85 -4.04 -0.02 2.17 16 4 N -0.71 -9.77 5.20 -60.29 -0.31 -10.08 16 5 C 0.52 7.10 6.80 -10.99 -0.07 7.02 16 6 O -0.53 -9.05 15.90 5.55 0.09 -8.96 16 7 C -0.17 -1.56 4.03 -90.96 -0.37 -1.93 16 8 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 9 C -0.11 -0.84 7.38 -25.92 -0.19 -1.03 16 10 C -0.16 -1.03 7.87 -25.90 -0.20 -1.23 16 11 C 0.27 2.67 3.10 -25.90 -0.08 2.59 16 12 F -0.19 -1.97 17.41 2.25 0.04 -1.94 16 13 F -0.17 -2.21 16.69 2.25 0.04 -2.17 16 14 C 0.11 2.37 3.07 -3.53 -0.01 2.36 16 15 N -0.60 -13.93 2.35 -171.82 -0.40 -14.33 16 16 C -0.26 -7.12 10.09 -15.06 -0.15 -7.28 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 18 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 19 N -0.90 -27.20 13.97 55.49 0.78 -26.42 16 20 Si 0.88 22.19 24.32 -169.99 -4.13 18.05 16 21 H -0.29 -6.99 6.58 56.52 0.37 -6.61 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.27 -6.79 6.66 56.52 0.38 -6.42 16 24 C 0.11 2.14 6.73 -3.53 -0.02 2.11 16 25 C 0.04 0.69 6.60 37.31 0.25 0.94 16 26 O -0.38 -6.46 10.18 -35.23 -0.36 -6.82 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.66 6.57 -51.93 -0.34 0.32 16 29 H 0.08 1.49 6.11 -51.93 -0.32 1.17 16 30 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.40 4.89 6.98 -40.82 -0.29 4.61 16 33 H 0.11 1.03 7.43 -51.93 -0.39 0.64 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.95 4.68 -51.93 -0.24 1.71 16 38 H 0.04 0.78 6.94 -51.93 -0.36 0.42 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.85 6.25 -51.93 -0.32 0.52 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -32.65 343.33 -5.93 -38.58 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.09 Total: 3.49 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.75 Total: 5.43 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.06 Total: -50.83 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.27 Total: -15.78 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.65 -5.93 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108016653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.934 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds