Wall clock time and date at job start Fri Apr 10 2020 18:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.55234 * 2 1 4 4 N 1.46504 * 109.47082 * 305.12104 * 3 2 1 5 5 C 1.34771 * 120.00328 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00290 * 180.02562 * 5 4 3 8 8 H 1.09002 * 112.84687 * 311.20373 * 7 5 4 9 9 C 1.53775 * 113.61628 * 180.02562 * 7 5 4 10 10 C 1.53776 * 87.08146 * 220.01943 * 9 7 5 11 11 C 1.53777 * 113.61250 * 82.50076 * 7 5 4 12 12 F 1.39898 * 113.61592 * 254.53025 * 11 7 5 13 13 F 1.39904 * 113.61568 * 25.43875 * 11 7 5 14 14 C 1.53293 * 109.51057 * 120.12202 * 2 1 3 15 15 N 1.47152 * 108.41769 * 67.63942 * 14 2 1 16 16 C 1.36932 * 120.98645 * 230.49193 * 15 14 2 17 17 H 1.08000 * 120.00187 * 153.83504 * 16 15 14 18 18 C 1.38817 * 119.99883 * 333.84068 * 16 15 14 19 19 N 1.31621 * 119.99841 * 158.68074 * 18 16 15 20 20 Si 1.86798 * 119.99999 * 338.67277 * 18 16 15 21 21 H 1.48500 * 109.46909 * 91.87111 * 20 18 16 22 22 H 1.48501 * 109.47217 * 211.86820 * 20 18 16 23 23 H 1.48499 * 109.47362 * 331.87226 * 20 18 16 24 24 C 1.47152 * 118.03135 * 50.51701 * 15 14 2 25 25 C 1.53299 * 108.38567 * 309.46527 * 24 15 14 26 26 O 1.42958 * 109.22366 * 52.30450 * 25 24 15 27 27 H 1.09000 * 109.46918 * 299.87915 * 1 2 3 28 28 H 1.09000 * 109.46797 * 59.87769 * 1 2 3 29 29 H 1.08999 * 109.46886 * 179.87479 * 1 2 3 30 30 H 1.08997 * 109.47523 * 65.12055 * 3 2 1 31 31 H 1.08998 * 109.47282 * 185.12679 * 3 2 1 32 32 H 0.97001 * 119.99665 * 0.02562 * 4 3 2 33 33 H 1.08996 * 113.61307 * 334.56967 * 9 7 5 34 34 H 1.09005 * 113.61169 * 105.46818 * 9 7 5 35 35 H 1.09003 * 113.61733 * 139.98225 * 10 9 7 36 36 H 1.09000 * 113.61524 * 270.79761 * 10 9 7 37 37 H 1.09002 * 109.68389 * 307.90161 * 14 2 1 38 38 H 1.09004 * 109.68229 * 187.38558 * 14 2 1 39 39 H 0.96995 * 119.99867 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.68148 * 69.18598 * 24 15 14 41 41 H 1.09000 * 109.68400 * 189.73773 * 24 15 14 42 42 H 1.08995 * 109.50732 * 172.22701 * 25 24 15 43 43 H 1.08997 * 109.51020 * 292.32466 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4567 2.1679 -1.1298 5 6 1.7670 3.4638 -1.3316 6 8 2.5312 4.0288 -0.5781 7 6 1.1644 4.2109 -2.4934 8 1 1.2486 3.6682 -3.4350 9 6 1.6184 5.6772 -2.5851 10 6 0.1697 6.0196 -2.9706 11 6 -0.2493 4.7476 -2.2140 12 9 -1.2606 4.0224 -2.8533 13 9 -0.5088 4.9631 -0.8562 14 6 2.0420 -0.7251 1.2498 15 7 1.6967 -2.1509 1.1343 16 6 1.0630 -2.8077 2.1551 17 1 0.4509 -3.6720 1.9435 18 6 1.2071 -2.3625 3.4620 19 7 0.3138 -2.6906 4.3713 20 14 2.6689 -1.2979 3.9302 21 1 2.3040 0.1344 3.7875 22 1 3.0510 -1.5734 5.3386 23 1 3.8138 -1.6084 3.0369 24 6 2.0530 -2.8501 -0.1105 25 6 1.5397 -2.0221 -1.2941 26 8 2.0070 -0.6771 -1.1655 27 1 -0.3633 0.5120 0.8911 28 1 -0.3633 0.5157 -0.8889 29 1 -0.3633 -1.0277 -0.0022 30 1 1.7563 1.9289 0.9322 31 1 3.1282 1.4416 -0.0918 32 1 0.8458 1.7159 -1.7326 33 1 1.9272 6.0992 -1.6288 34 1 2.3380 5.8624 -3.3827 35 1 -0.1975 6.9395 -2.5156 36 1 -0.0194 5.9732 -4.0431 37 1 1.5704 -0.3040 2.1377 38 1 3.1240 -0.6141 1.3213 39 1 0.4147 -2.3798 5.2846 40 1 3.1361 -2.9529 -0.1767 41 1 1.5887 -3.8362 -0.1235 42 1 1.9115 -2.4491 -2.2255 43 1 0.4498 -2.0308 -1.2991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108016653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:31 Heat of formation + Delta-G solvation = -146.976145 kcal Electronic energy + Delta-G solvation = -28467.489590 eV Core-core repulsion = 24184.541065 eV Total energy + Delta-G solvation = -4282.948525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.92923 -48.26691 -41.42835 -40.58742 -38.10735 -36.70651 -36.06261 -33.67255 -33.37901 -30.04286 -29.06939 -28.06786 -26.62681 -25.96437 -25.33646 -23.00047 -22.13640 -21.02493 -20.65235 -19.25378 -19.05706 -18.61335 -17.77228 -17.51206 -17.40906 -17.07216 -16.68099 -16.25701 -15.92679 -15.86194 -15.61324 -15.45206 -15.08971 -14.92941 -14.75718 -14.53419 -14.36116 -14.11666 -13.95213 -13.87606 -13.56918 -13.13540 -13.07795 -12.77831 -12.70226 -12.45226 -12.41147 -12.26025 -12.14485 -12.05725 -11.88009 -11.66764 -11.30696 -11.08851 -10.94449 -10.51949 -10.25694 -8.98442 -8.23279 -5.54440 1.22674 1.28695 1.35093 1.41858 1.94140 2.33901 2.44975 2.61652 2.73831 2.94037 3.13747 3.20331 3.32476 3.42775 3.69200 3.78767 3.83185 3.90906 4.25582 4.29762 4.38257 4.41167 4.46167 4.48046 4.50655 4.52266 4.59509 4.68111 4.75035 4.76968 4.83227 4.93212 5.01149 5.09654 5.17305 5.25622 5.29912 5.75847 6.05921 6.19277 6.36290 6.78832 7.04390 7.51546 7.92861 8.95985 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019354 B = 0.003730 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.385105 B = 7505.481470 C = 7854.042607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C 0.141 3.859 4 N -0.706 5.706 5 C 0.515 3.485 6 O -0.570 6.570 7 C -0.162 4.162 8 H 0.176 0.824 9 C -0.111 4.111 10 C -0.142 4.142 11 C 0.250 3.750 12 F -0.191 7.191 13 F -0.195 7.195 14 C 0.105 3.895 15 N -0.616 5.616 16 C -0.244 4.244 17 H 0.064 0.936 18 C -0.025 4.025 19 N -0.949 5.949 20 Si 0.928 3.072 21 H -0.277 1.277 22 H -0.307 1.307 23 H -0.266 1.266 24 C 0.104 3.896 25 C 0.049 3.951 26 O -0.375 6.375 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.414 0.586 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 16.035 -21.641 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.061 3.939 3 C 0.016 3.984 4 N -0.358 5.358 5 C 0.301 3.699 6 O -0.449 6.449 7 C -0.183 4.183 8 H 0.194 0.806 9 C -0.148 4.148 10 C -0.180 4.180 11 C 0.213 3.787 12 F -0.172 7.172 13 F -0.176 7.176 14 C -0.021 4.021 15 N -0.341 5.341 16 C -0.373 4.373 17 H 0.081 0.919 18 C -0.220 4.220 19 N -0.595 5.595 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.236 1.236 23 H -0.191 1.191 24 C -0.020 4.020 25 C -0.028 4.028 26 O -0.294 6.294 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.252 0.748 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.145 0.855 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.006 16.457 -21.058 26.745 hybrid contribution -0.032 -0.600 1.472 1.590 sum 0.974 15.857 -19.585 25.219 Atomic orbital electron populations 1.22156 0.94144 1.03090 1.02187 1.21939 0.94490 0.90598 0.86875 1.21141 0.98628 0.88717 0.89910 1.45893 1.48405 1.11060 1.30408 1.20720 0.81098 0.81731 0.86314 1.90697 1.37462 1.68410 1.48327 1.24335 0.93464 1.00316 1.00220 0.80624 1.22765 0.97633 0.89780 1.04652 1.24110 0.94944 0.95189 1.03718 1.22587 0.83909 0.96008 0.76172 1.93032 1.63854 1.79803 1.80507 1.93033 1.94962 1.95255 1.34367 1.21882 0.97583 0.85471 0.97214 1.44415 1.69231 1.04687 1.15792 1.18845 1.20958 1.11856 0.85681 0.91878 1.25736 0.99784 1.00670 0.95856 1.69936 1.35338 1.50526 1.03686 0.86211 0.82776 0.79063 0.76201 1.20360 1.23585 1.19100 1.21888 0.98219 0.96345 0.85559 1.23173 0.99245 0.81509 0.98862 1.87860 1.72908 1.26533 1.42149 0.92847 0.90295 0.91836 0.91169 0.91003 0.74827 0.89782 0.85700 0.87458 0.83408 0.92211 0.95147 0.92869 0.94685 0.90646 0.85498 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 7.87 71.98 0.57 -4.57 16 2 C 0.10 3.47 0.78 -10.69 -0.01 3.46 16 3 C 0.14 4.46 4.85 86.38 0.42 4.87 16 4 N -0.71 -18.08 5.20 -463.06 -2.41 -20.48 16 5 C 0.51 13.24 6.80 87.66 0.60 13.84 16 6 O -0.57 -19.21 15.90 -3.04 -0.05 -19.26 16 7 C -0.16 -2.53 4.03 -11.02 -0.04 -2.57 16 8 H 0.18 1.48 8.14 -2.39 -0.02 1.46 16 9 C -0.11 -1.34 7.38 31.12 0.23 -1.11 16 10 C -0.14 -1.27 7.87 31.13 0.25 -1.02 16 11 C 0.25 4.35 3.10 31.13 0.10 4.45 16 12 F -0.19 -3.54 17.41 44.97 0.78 -2.76 16 13 F -0.20 -4.96 16.69 44.97 0.75 -4.21 16 14 C 0.10 4.48 3.07 86.35 0.26 4.75 16 15 N -0.62 -28.27 2.35 -697.52 -1.64 -29.91 16 16 C -0.24 -13.47 10.09 84.04 0.85 -12.63 16 17 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 18 C -0.02 -1.44 5.23 84.86 0.44 -1.00 16 19 N -0.95 -59.01 13.97 21.65 0.30 -58.71 16 20 Si 0.93 46.94 24.32 68.60 1.67 48.61 16 21 H -0.28 -13.41 6.58 99.48 0.65 -12.76 16 22 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 23 H -0.27 -13.12 6.66 99.48 0.66 -12.45 16 24 C 0.10 3.79 6.73 86.36 0.58 4.38 16 25 C 0.05 1.41 6.60 72.08 0.48 1.88 16 26 O -0.38 -11.65 10.18 -148.98 -1.52 -13.17 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 2.03 6.57 -2.39 -0.02 2.01 16 29 H 0.06 2.29 6.11 -2.39 -0.01 2.27 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.41 8.83 6.98 -92.71 -0.65 8.18 16 33 H 0.08 1.49 7.43 -2.39 -0.02 1.47 16 34 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.06 2.84 4.68 -2.39 -0.01 2.83 16 38 H 0.03 1.34 6.94 -2.38 -0.02 1.32 16 39 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 2.66 7.96 -2.39 -0.02 2.64 16 42 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.06 1.65 6.25 -2.39 -0.01 1.63 16 Total: -1.00 -73.52 343.33 2.90 -70.62 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.30 Total: 14.54 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 4.71 Total: 14.73 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -3.74 Total: -109.10 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.56 Total: -32.43 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 1.53 Total: -6.97 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.67 Total: 48.61 kcal Total: -73.52 2.90 -70.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108016653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.358 kcal (2) G-P(sol) polarization free energy of solvation -73.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds