Wall clock time and date at job start Fri Apr 10 2020 18:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35586 * 117.00362 * 2 1 4 4 C 1.39095 * 120.52097 * 359.97438 * 3 2 1 5 5 C 1.38400 * 118.60735 * 179.77073 * 4 3 2 6 6 C 1.39707 * 119.60045 * 0.51363 * 5 4 3 7 7 N 1.39769 * 119.47366 * 179.74321 * 6 5 4 8 8 C 1.35928 * 126.48944 * 311.55270 * 7 6 5 9 9 N 1.30480 * 108.55489 * 179.97438 * 8 7 6 10 10 C 1.34153 * 109.37094 * 359.97438 * 9 8 7 11 11 C 1.34623 * 108.22280 * 0.02562 * 10 9 8 12 12 C 1.50697 * 126.58906 * 179.74420 * 11 10 9 13 13 C 1.52997 * 109.47671 * 84.25832 * 12 11 10 14 14 H 1.08999 * 109.47009 * 303.01466 * 13 12 11 15 15 N 1.46904 * 109.46938 * 63.00782 * 13 12 11 16 16 C 1.52993 * 109.47269 * 183.00836 * 13 12 11 17 17 O 1.42897 * 109.47111 * 176.14235 * 16 13 12 18 18 N 1.31771 * 121.04966 * 359.47318 * 6 5 4 19 19 C 1.33743 * 121.49598 * 0.25073 * 18 6 5 20 20 C 1.40974 * 119.85411 * 180.02562 * 19 18 6 21 21 H 1.07998 * 119.99709 * 183.89886 * 20 19 18 22 22 C 1.40038 * 120.00051 * 3.88865 * 20 19 18 23 23 N 1.30761 * 119.99926 * 353.47901 * 22 20 19 24 24 Si 1.86806 * 119.99715 * 173.47797 * 22 20 19 25 25 H 1.48498 * 109.46832 * 90.00268 * 24 22 20 26 26 H 1.48501 * 109.46615 * 210.00216 * 24 22 20 27 27 H 1.48495 * 109.47188 * 329.99884 * 24 22 20 28 28 H 1.08992 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47096 * 300.00847 * 1 2 3 30 30 H 1.09007 * 109.46631 * 59.99943 * 1 2 3 31 31 H 1.08002 * 120.69791 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.19811 * 180.26235 * 5 4 3 33 33 H 1.07996 * 125.72300 * 359.97288 * 8 7 6 34 34 H 1.08001 * 125.89316 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47015 * 204.26004 * 12 11 10 36 36 H 1.09006 * 109.46861 * 324.25954 * 12 11 10 37 37 H 1.00903 * 110.99808 * 296.05005 * 15 13 12 38 38 H 1.00897 * 110.99954 * 59.99886 * 15 13 12 39 39 H 1.09001 * 109.47323 * 296.14532 * 16 13 12 40 40 H 1.09002 * 109.47013 * 56.15063 * 16 13 12 41 41 H 0.96699 * 114.00389 * 179.97438 * 17 16 13 42 42 H 0.97004 * 119.99972 * 185.01436 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2080 0.0000 4 6 1.2979 2.3815 -0.0005 5 6 1.9671 3.5929 0.0043 6 6 3.3640 3.6096 -0.0012 7 7 4.0371 4.8345 -0.0017 8 6 3.7879 5.8935 -0.8166 9 7 4.6201 6.8528 -0.5172 10 6 5.4193 6.4524 0.4831 11 6 5.0738 5.1959 0.8208 12 6 5.7079 4.3471 1.8925 13 6 5.0799 4.6822 3.2468 14 1 5.1976 5.7468 3.4484 15 7 3.6506 4.3439 3.2208 16 6 5.7751 3.8751 4.3450 17 8 5.2504 4.2538 5.6190 18 7 4.0571 2.4889 -0.0007 19 6 3.4548 1.2948 0.0002 20 6 4.2303 0.1176 0.0012 21 1 3.7481 -0.8467 -0.0617 22 6 5.6259 0.1986 0.0836 23 7 6.2174 1.3636 0.0310 24 14 6.6425 -1.3577 0.2688 25 1 7.0004 -1.8779 -1.0753 26 1 7.8819 -1.0519 1.0274 27 1 5.8533 -2.3802 1.0013 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2184 2.3480 -0.0005 32 1 1.4127 4.5197 0.0083 33 1 3.0284 5.9341 -1.5833 34 1 6.2046 7.0372 0.9389 35 1 5.5434 3.2936 1.6663 36 1 6.7787 4.5480 1.9289 37 1 3.1571 4.9104 2.5473 38 1 3.5149 3.3614 3.0354 39 1 5.5995 2.8119 4.1811 40 1 6.8464 4.0746 4.3195 41 1 5.6461 3.7807 6.3638 42 1 7.1859 1.4155 0.0147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169072543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:53 Heat of formation + Delta-G solvation = 15.195078 kcal Electronic energy + Delta-G solvation = -27740.328708 eV Core-core repulsion = 23915.101642 eV Total energy + Delta-G solvation = -3825.227066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66402 -39.16936 -37.34177 -37.03135 -34.81099 -34.21829 -32.60424 -30.89589 -30.16843 -29.08011 -27.80466 -26.77955 -25.71356 -25.14448 -22.41345 -22.07495 -20.81386 -20.34584 -19.31869 -17.95307 -17.26264 -16.98858 -16.77024 -15.93215 -15.78235 -15.11037 -14.98998 -14.68518 -14.50307 -14.15412 -13.56597 -13.39589 -13.21935 -13.03771 -12.85735 -12.75258 -12.62358 -12.49511 -12.21395 -11.99671 -11.53324 -11.41690 -11.19882 -10.99010 -10.75704 -10.73242 -10.49984 -10.20935 -9.80078 -9.79268 -9.45633 -9.31349 -8.53588 -8.37877 -8.15919 -7.71716 -7.40081 -6.76279 -4.74464 1.99852 2.46385 2.81445 2.94467 2.95560 3.01361 3.37010 3.63573 3.73600 4.17146 4.35264 4.44140 4.94695 5.15990 5.23299 5.30466 5.45768 5.48451 5.51610 5.59481 5.65371 5.66757 5.81017 5.84545 5.90939 5.92130 5.93251 6.11668 6.22422 6.26326 6.35516 6.68887 6.83073 6.84463 7.07123 7.14791 7.27116 7.31440 7.57946 7.82905 7.85510 7.87392 7.95464 8.04953 8.37019 8.54383 8.65353 9.53407 9.95620 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.006173 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.345249 B = 4535.076735 C = 5444.541063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C -0.019 4.019 4 C -0.134 4.134 5 C -0.277 4.277 6 C 0.312 3.688 7 N -0.382 5.382 8 C 0.183 3.817 9 N -0.495 5.495 10 C -0.049 4.049 11 C 0.022 3.978 12 C -0.092 4.092 13 C 0.100 3.900 14 H 0.080 0.920 15 N -0.828 5.828 16 C 0.087 3.913 17 O -0.560 6.560 18 N -0.463 5.463 19 C 0.262 3.738 20 C -0.397 4.397 21 H 0.097 0.903 22 C 0.066 3.934 23 N -0.706 5.706 24 Si 0.911 3.089 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.258 1.258 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.199 0.801 34 H 0.162 0.838 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.337 0.663 38 H 0.339 0.661 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.369 0.631 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 -0.132 3.691 4.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.068 4.068 4 C -0.158 4.158 5 C -0.303 4.303 6 C 0.082 3.918 7 N -0.061 5.061 8 C -0.099 4.099 9 N -0.213 5.213 10 C -0.196 4.196 11 C -0.093 4.093 12 C -0.133 4.133 13 C -0.012 4.012 14 H 0.098 0.902 15 N -0.357 5.357 16 C 0.008 3.992 17 O -0.364 6.364 18 N -0.181 5.181 19 C 0.135 3.865 20 C -0.428 4.428 21 H 0.115 0.885 22 C -0.161 4.161 23 N -0.327 5.327 24 Si 0.734 3.266 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.182 1.182 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.215 0.785 34 H 0.179 0.821 35 H 0.137 0.863 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.214 0.786 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.821 1.091 3.758 3.998 hybrid contribution -0.210 -1.831 -0.540 1.921 sum -1.031 -0.740 3.218 3.459 Atomic orbital electron populations 1.22816 0.81135 1.02286 1.00179 1.85960 1.18750 1.27374 1.89817 1.20262 0.93506 0.83530 1.09546 1.20788 0.98211 0.91795 1.05042 1.20585 0.92008 0.97322 1.20391 1.18283 0.87307 0.85007 1.01215 1.42828 1.25791 1.11011 1.26516 1.24925 1.02751 0.83292 0.98914 1.70180 1.07098 1.28695 1.15344 1.21867 1.03573 0.94216 0.99957 1.21047 0.93743 0.96379 0.98165 1.21012 0.98928 1.02686 0.90648 1.21395 0.88674 0.99773 0.91407 0.90173 1.58929 1.09038 1.10147 1.57557 1.22149 0.95573 0.97877 0.83573 1.86582 1.67081 1.67236 1.15481 1.68314 1.35041 0.94989 1.19720 1.17826 0.85170 0.90788 0.92719 1.19644 0.90840 0.93135 1.39191 0.88492 1.26120 0.98727 0.97591 0.93655 1.70054 1.10897 1.24775 1.26979 0.86238 0.79160 0.81637 0.79542 1.19242 1.19934 1.18183 0.89570 0.93865 0.93953 0.86939 0.87789 0.78463 0.82086 0.86251 0.90414 0.85006 0.84851 0.93614 0.93614 0.78551 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.83 101.05 0.99 1.46 16 2 O -0.31 -6.16 9.62 -18.46 -0.18 -6.34 16 3 C -0.02 -0.42 6.74 -38.11 -0.26 -0.68 16 4 C -0.13 -2.63 9.12 -39.20 -0.36 -2.99 16 5 C -0.28 -5.51 9.69 -38.97 -0.38 -5.89 16 6 C 0.31 6.71 6.60 -154.58 -1.02 5.69 16 7 N -0.38 -7.70 2.81 -59.55 -0.17 -7.86 16 8 C 0.18 3.46 12.25 -89.58 -1.10 2.37 16 9 N -0.50 -9.67 11.24 -14.46 -0.16 -9.84 16 10 C -0.05 -0.92 11.78 -17.82 -0.21 -1.13 16 11 C 0.02 0.43 5.26 -81.48 -0.43 0.00 16 12 C -0.09 -1.66 5.20 -27.89 -0.14 -1.81 16 13 C 0.10 1.67 3.10 -67.72 -0.21 1.46 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 15 N -0.83 -15.05 9.12 -4.67 -0.04 -15.09 16 16 C 0.09 1.29 6.65 37.15 0.25 1.53 16 17 O -0.56 -8.23 13.59 -35.23 -0.48 -8.71 16 18 N -0.46 -10.97 6.37 -10.05 -0.06 -11.03 16 19 C 0.26 6.33 6.56 -84.85 -0.56 5.77 16 20 C -0.40 -9.52 8.93 -37.87 -0.34 -9.86 16 21 H 0.10 2.27 7.33 -52.49 -0.38 1.88 16 22 C 0.07 1.48 5.49 -17.33 -0.10 1.38 16 23 N -0.71 -16.40 10.92 55.55 0.61 -15.79 16 24 Si 0.91 16.95 29.57 -169.99 -5.03 11.92 16 25 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 27 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.58 7.69 -51.93 -0.40 0.19 16 30 H 0.04 0.57 7.69 -51.93 -0.40 0.17 16 31 H 0.11 1.89 6.44 -52.49 -0.34 1.55 16 32 H 0.10 1.89 8.04 -52.49 -0.42 1.46 16 33 H 0.20 3.14 8.06 -52.49 -0.42 2.72 16 34 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 35 H 0.12 2.50 6.01 -51.93 -0.31 2.19 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.34 6.41 7.99 -39.29 -0.31 6.10 16 38 H 0.34 6.66 9.00 -39.29 -0.35 6.30 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.37 3.57 9.12 45.56 0.42 3.98 16 42 H 0.28 5.96 8.30 -40.82 -0.34 5.62 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -27.92 356.17 -8.60 -36.52 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -4.60 Total: 23.54 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.85 Total: -2.68 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.17 Total: -59.62 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.66 Total: -15.05 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.92 -8.60 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169072543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.719 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds