Wall clock time and date at job start Fri Apr 10 2020 18:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35586 * 117.00362 * 2 1 4 4 C 1.39095 * 120.52097 * 359.97438 * 3 2 1 5 5 C 1.38400 * 118.60735 * 179.77073 * 4 3 2 6 6 C 1.39707 * 119.60045 * 0.51363 * 5 4 3 7 7 N 1.39769 * 119.47366 * 179.74321 * 6 5 4 8 8 C 1.35928 * 126.48944 * 311.55270 * 7 6 5 9 9 N 1.30480 * 108.55489 * 179.97438 * 8 7 6 10 10 C 1.34153 * 109.37094 * 359.97438 * 9 8 7 11 11 C 1.34623 * 108.22280 * 0.02562 * 10 9 8 12 12 C 1.50697 * 126.58906 * 179.74420 * 11 10 9 13 13 C 1.52997 * 109.47671 * 84.25832 * 12 11 10 14 14 H 1.08999 * 109.47009 * 303.01466 * 13 12 11 15 15 N 1.46904 * 109.46938 * 63.00782 * 13 12 11 16 16 C 1.52993 * 109.47269 * 183.00836 * 13 12 11 17 17 O 1.42897 * 109.47111 * 176.14235 * 16 13 12 18 18 N 1.31771 * 121.04966 * 359.47318 * 6 5 4 19 19 C 1.33743 * 121.49598 * 0.25073 * 18 6 5 20 20 C 1.40974 * 119.85411 * 180.02562 * 19 18 6 21 21 H 1.07998 * 119.99709 * 183.89886 * 20 19 18 22 22 C 1.40038 * 120.00051 * 3.88865 * 20 19 18 23 23 N 1.30761 * 119.99926 * 353.47901 * 22 20 19 24 24 Si 1.86806 * 119.99715 * 173.47797 * 22 20 19 25 25 H 1.48498 * 109.46832 * 90.00268 * 24 22 20 26 26 H 1.48501 * 109.46615 * 210.00216 * 24 22 20 27 27 H 1.48495 * 109.47188 * 329.99884 * 24 22 20 28 28 H 1.08992 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47096 * 300.00847 * 1 2 3 30 30 H 1.09007 * 109.46631 * 59.99943 * 1 2 3 31 31 H 1.08002 * 120.69791 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.19811 * 180.26235 * 5 4 3 33 33 H 1.07996 * 125.72300 * 359.97288 * 8 7 6 34 34 H 1.08001 * 125.89316 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47015 * 204.26004 * 12 11 10 36 36 H 1.09006 * 109.46861 * 324.25954 * 12 11 10 37 37 H 1.00903 * 110.99808 * 296.05005 * 15 13 12 38 38 H 1.00897 * 110.99954 * 59.99886 * 15 13 12 39 39 H 1.09001 * 109.47323 * 296.14532 * 16 13 12 40 40 H 1.09002 * 109.47013 * 56.15063 * 16 13 12 41 41 H 0.96699 * 114.00389 * 179.97438 * 17 16 13 42 42 H 0.97004 * 119.99972 * 185.01436 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2080 0.0000 4 6 1.2979 2.3815 -0.0005 5 6 1.9671 3.5929 0.0043 6 6 3.3640 3.6096 -0.0012 7 7 4.0371 4.8345 -0.0017 8 6 3.7879 5.8935 -0.8166 9 7 4.6201 6.8528 -0.5172 10 6 5.4193 6.4524 0.4831 11 6 5.0738 5.1959 0.8208 12 6 5.7079 4.3471 1.8925 13 6 5.0799 4.6822 3.2468 14 1 5.1976 5.7468 3.4484 15 7 3.6506 4.3439 3.2208 16 6 5.7751 3.8751 4.3450 17 8 5.2504 4.2538 5.6190 18 7 4.0571 2.4889 -0.0007 19 6 3.4548 1.2948 0.0002 20 6 4.2303 0.1176 0.0012 21 1 3.7481 -0.8467 -0.0617 22 6 5.6259 0.1986 0.0836 23 7 6.2174 1.3636 0.0310 24 14 6.6425 -1.3577 0.2688 25 1 7.0004 -1.8779 -1.0753 26 1 7.8819 -1.0519 1.0274 27 1 5.8533 -2.3802 1.0013 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2184 2.3480 -0.0005 32 1 1.4127 4.5197 0.0083 33 1 3.0284 5.9341 -1.5833 34 1 6.2046 7.0372 0.9389 35 1 5.5434 3.2936 1.6663 36 1 6.7787 4.5480 1.9289 37 1 3.1571 4.9104 2.5473 38 1 3.5149 3.3614 3.0354 39 1 5.5995 2.8119 4.1811 40 1 6.8464 4.0746 4.3195 41 1 5.6461 3.7807 6.3638 42 1 7.1859 1.4155 0.0147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169072543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:53 Heat of formation + Delta-G solvation = -3.386386 kcal Electronic energy + Delta-G solvation = -27741.134461 eV Core-core repulsion = 23915.101642 eV Total energy + Delta-G solvation = -3826.032819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.15130 -40.73695 -38.62576 -38.52112 -36.09144 -35.85169 -34.15290 -32.51627 -31.63230 -30.65004 -29.14954 -28.12491 -27.30735 -26.49049 -23.95325 -23.68086 -22.21633 -21.78825 -20.81067 -19.54463 -18.72435 -18.51010 -18.03064 -17.35412 -17.25314 -16.67740 -16.38701 -16.05095 -15.93574 -15.60846 -15.06665 -14.75543 -14.71197 -14.42407 -14.29161 -14.21506 -13.98971 -13.94632 -13.59497 -13.45583 -13.02057 -12.92279 -12.68968 -12.54647 -12.16379 -12.09726 -11.83260 -11.71303 -11.39525 -10.96496 -10.92797 -10.85111 -10.17322 -9.84957 -9.78234 -9.17398 -9.01958 -8.40033 -6.46087 0.41087 0.85091 1.29398 1.41282 1.48556 1.54244 1.87065 2.16430 2.19801 2.70685 2.79844 3.26037 3.57581 3.63050 3.79385 3.87129 4.09012 4.14116 4.18273 4.27920 4.41681 4.46782 4.48840 4.51138 4.54332 4.60581 4.66396 4.70937 4.76458 4.82159 4.90800 5.18592 5.19920 5.27340 5.49828 5.62024 5.71025 5.85593 6.14802 6.19324 6.23846 6.33560 6.53609 6.71113 6.95357 7.00965 7.09825 7.87480 8.32893 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.006173 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.345249 B = 4535.076735 C = 5444.541063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C -0.030 4.030 4 C -0.130 4.130 5 C -0.266 4.266 6 C 0.299 3.701 7 N -0.389 5.389 8 C 0.177 3.823 9 N -0.508 5.508 10 C -0.053 4.053 11 C 0.007 3.993 12 C -0.084 4.084 13 C 0.104 3.896 14 H 0.082 0.918 15 N -0.825 5.825 16 C 0.092 3.908 17 O -0.577 6.577 18 N -0.480 5.480 19 C 0.233 3.767 20 C -0.433 4.433 21 H 0.090 0.910 22 C 0.033 3.967 23 N -0.734 5.734 24 Si 0.976 3.024 25 H -0.267 1.267 26 H -0.267 1.267 27 H -0.259 1.259 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.145 0.855 32 H 0.125 0.875 33 H 0.223 0.777 34 H 0.185 0.815 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.331 0.669 38 H 0.328 0.672 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.391 0.609 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 0.159 4.175 4.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.243 6.243 3 C -0.080 4.080 4 C -0.155 4.155 5 C -0.292 4.292 6 C 0.069 3.931 7 N -0.069 5.069 8 C -0.105 4.105 9 N -0.226 5.226 10 C -0.199 4.199 11 C -0.107 4.107 12 C -0.124 4.124 13 C -0.009 4.009 14 H 0.100 0.900 15 N -0.352 5.352 16 C 0.014 3.986 17 O -0.384 6.384 18 N -0.197 5.197 19 C 0.105 3.895 20 C -0.465 4.465 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.356 5.356 24 Si 0.797 3.203 25 H -0.192 1.192 26 H -0.192 1.192 27 H -0.182 1.182 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.143 0.857 33 H 0.239 0.761 34 H 0.203 0.797 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.240 0.760 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.321 1.403 4.263 4.678 hybrid contribution -0.218 -1.840 -0.684 1.975 sum -1.539 -0.437 3.579 3.920 Atomic orbital electron populations 1.23158 0.78228 1.04587 1.01187 1.85918 1.21761 1.26823 1.89751 1.20317 0.93241 0.84861 1.09537 1.21125 0.99779 0.90854 1.03701 1.20898 0.91651 0.98376 1.18276 1.18487 0.88036 0.85039 1.01526 1.42909 1.26182 1.10757 1.27050 1.25507 1.03100 0.82814 0.99042 1.70208 1.07568 1.29009 1.15801 1.22290 1.03793 0.94220 0.99616 1.21353 0.93896 0.96891 0.98607 1.20917 0.99750 1.00719 0.91015 1.21412 0.87877 1.00060 0.91502 0.90020 1.58984 1.10042 1.09155 1.57031 1.22046 0.96625 0.96641 0.83286 1.86514 1.67853 1.67891 1.16107 1.68238 1.36063 0.95466 1.19954 1.18179 0.86721 0.91168 0.93425 1.19772 0.91938 0.93047 1.41700 0.89204 1.26769 0.99104 1.00268 0.92944 1.70129 1.11101 1.26305 1.28033 0.85271 0.77664 0.78069 0.79290 1.19190 1.19165 1.18247 0.86844 0.92786 0.92753 0.83704 0.85665 0.76064 0.79750 0.89033 0.89081 0.85735 0.86069 0.94879 0.91149 0.75992 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.83 113.37 1.11 1.75 16 2 O -0.33 -13.14 9.62 -88.95 -0.86 -13.99 16 3 C -0.03 -1.33 6.74 23.22 0.16 -1.17 16 4 C -0.13 -4.93 9.12 22.51 0.21 -4.73 16 5 C -0.27 -10.27 9.69 22.66 0.22 -10.05 16 6 C 0.30 12.83 6.60 133.13 0.88 13.71 16 7 N -0.39 -15.50 2.81 -342.31 -0.96 -16.46 16 8 C 0.18 6.49 12.25 179.98 2.20 8.70 16 9 N -0.51 -19.21 11.24 -199.67 -2.24 -21.45 16 10 C -0.05 -1.91 11.78 83.51 0.98 -0.92 16 11 C 0.01 0.28 5.26 40.89 0.21 0.49 16 12 C -0.08 -2.99 5.20 29.85 0.16 -2.84 16 13 C 0.10 3.41 3.10 44.91 0.14 3.54 16 14 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 15 N -0.83 -29.86 9.12 -168.69 -1.54 -31.40 16 16 C 0.09 2.64 6.65 71.98 0.48 3.12 16 17 O -0.58 -16.05 13.59 -148.98 -2.02 -18.07 16 18 N -0.48 -23.18 6.37 -185.72 -1.18 -24.37 16 19 C 0.23 11.54 6.56 40.27 0.26 11.80 16 20 C -0.43 -21.50 8.93 23.38 0.21 -21.29 16 21 H 0.09 4.39 7.33 -2.91 -0.02 4.37 16 22 C 0.03 1.51 5.49 85.29 0.47 1.98 16 23 N -0.73 -35.04 10.92 21.84 0.24 -34.80 16 24 Si 0.98 35.41 29.57 68.60 2.03 37.44 16 25 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 26 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 27 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 28 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.05 1.33 7.69 -2.39 -0.02 1.31 16 30 H 0.05 1.33 7.69 -2.38 -0.02 1.31 16 31 H 0.15 4.43 6.44 -2.91 -0.02 4.41 16 32 H 0.13 4.24 8.04 -2.91 -0.02 4.22 16 33 H 0.22 6.67 8.06 -2.91 -0.02 6.64 16 34 H 0.19 5.56 8.06 -2.91 -0.02 5.53 16 35 H 0.09 3.91 6.01 -2.39 -0.01 3.90 16 36 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 37 H 0.33 12.49 7.99 -89.69 -0.72 11.78 16 38 H 0.33 13.10 9.00 -89.70 -0.81 12.29 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.39 6.84 9.12 -74.06 -0.68 6.16 16 42 H 0.28 12.32 8.30 -92.71 -0.77 11.55 16 Total: -1.00 -60.97 356.17 0.04 -60.93 By element: Atomic # 1 Polarization: 59.20 SS G_CDS: -1.11 Total: 58.10 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 7.69 Total: 4.09 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -5.69 Total: -128.48 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -2.88 Total: -32.07 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -60.97 0.04 -60.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169072543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.542 kcal (2) G-P(sol) polarization free energy of solvation -60.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds