Wall clock time and date at job start Fri Apr 10 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46708 * 2 1 4 4 C 1.34968 * 116.99551 * 184.82515 * 3 2 1 5 5 O 1.21696 * 120.00376 * 5.13988 * 4 3 2 6 6 C 1.41304 * 119.99418 * 185.14717 * 4 3 2 7 7 C 1.34099 * 118.64432 * 185.14227 * 6 4 3 8 8 N 1.36671 * 118.83106 * 0.46574 * 7 6 4 9 9 C 1.38892 * 119.99848 * 118.49847 * 8 7 6 10 10 C 1.40075 * 120.75363 * 351.68418 * 9 8 7 11 11 N 1.31656 * 119.13393 * 179.71332 * 10 9 8 12 12 C 1.33609 * 120.79007 * 0.57342 * 11 10 9 13 13 C 1.41125 * 119.17439 * 179.67642 * 12 11 10 14 14 H 1.07996 * 120.00273 * 185.42108 * 13 12 11 15 15 C 1.40059 * 119.99905 * 5.42551 * 13 12 11 16 16 N 1.30720 * 119.99797 * 354.61254 * 15 13 12 17 17 Si 1.86799 * 120.00070 * 174.61393 * 15 13 12 18 18 H 1.48491 * 109.47250 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46952 * 120.00227 * 17 15 13 20 20 H 1.48503 * 109.46911 * 239.99878 * 17 15 13 21 21 N 1.33612 * 121.65217 * 359.69990 * 12 11 10 22 22 C 1.31645 * 120.79164 * 0.02562 * 21 12 11 23 23 C 1.50377 * 122.33743 * 180.74178 * 7 6 4 24 24 C 1.53226 * 109.58355 * 342.82998 * 23 7 6 25 25 N 1.47176 * 108.47542 * 49.97686 * 24 23 7 26 26 C 1.46818 * 110.36632 * 289.79730 * 25 24 23 27 27 H 1.09006 * 109.46906 * 184.97792 * 1 2 3 28 28 H 1.08998 * 109.47432 * 304.97482 * 1 2 3 29 29 H 1.08996 * 109.47520 * 64.97956 * 1 2 3 30 30 H 1.08991 * 109.47553 * 239.99697 * 2 1 3 31 31 H 1.09003 * 109.47005 * 119.99648 * 2 1 3 32 32 H 0.97003 * 120.00366 * 298.76974 * 8 7 6 33 33 H 1.07998 * 120.42855 * 0.02562 * 10 9 8 34 34 H 0.97002 * 119.99974 * 185.00025 * 16 15 13 35 35 H 1.07998 * 120.43342 * 179.97438 * 22 21 12 36 36 H 1.09008 * 109.43666 * 103.07490 * 23 7 6 37 37 H 1.09000 * 109.43518 * 222.94895 * 23 7 6 38 38 H 1.09001 * 109.82779 * 290.20093 * 24 23 7 39 39 H 1.08998 * 109.69257 * 169.67294 * 24 23 7 40 40 H 1.00896 * 110.99912 * 53.30288 * 25 24 23 41 41 H 1.09000 * 109.34788 * 291.37717 * 26 25 24 42 42 H 1.08991 * 109.35107 * 171.82427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3403 1.5256 -0.1012 5 8 4.0702 0.5686 -0.2809 6 6 3.8893 2.8235 0.0018 7 6 5.2044 2.9836 -0.2064 8 7 5.9602 1.8887 -0.5192 9 6 6.6289 1.8309 -1.7351 10 6 6.4051 2.7991 -2.7224 11 7 7.0606 2.7167 -3.8612 12 6 7.9210 1.7192 -4.0845 13 6 8.6001 1.6601 -5.3202 14 1 9.2311 0.8142 -5.5498 15 6 8.4558 2.6986 -6.2489 16 7 7.6121 3.6698 -6.0174 17 14 9.4690 2.6956 -7.8182 18 1 10.3429 1.4952 -7.8410 19 1 8.5614 2.6702 -8.9933 20 1 10.3086 3.9195 -7.8677 21 7 8.1542 0.7759 -3.1674 22 6 7.5377 0.7995 -2.0045 23 6 5.8780 4.3240 -0.1020 24 6 4.8244 5.4347 -0.1662 25 7 3.7578 5.1221 0.7986 26 6 2.9760 3.9673 0.3395 27 1 -0.3633 -1.0239 0.0892 28 1 -0.3634 0.5890 0.8420 29 1 -0.3634 0.4346 -0.9312 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 6.0265 1.1503 0.1063 33 1 5.7078 3.6055 -2.5496 34 1 7.4587 4.3500 -6.6918 35 1 7.7303 0.0339 -1.2676 36 1 6.4183 4.3858 0.8427 37 1 6.5787 4.4431 -0.9284 38 1 4.4047 5.4886 -1.1707 39 1 5.2817 6.3901 0.0910 40 1 4.1389 4.9582 1.7184 41 1 2.4048 4.2468 -0.5457 42 1 2.2888 3.6600 1.1278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170517946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:58 Heat of formation + Delta-G solvation = -1.841050 kcal Electronic energy + Delta-G solvation = -26878.107960 eV Core-core repulsion = 23052.142152 eV Total energy + Delta-G solvation = -3825.965808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85792 -39.37702 -38.45399 -36.61095 -35.45372 -33.60203 -32.16981 -31.87853 -31.01144 -30.67099 -28.77321 -25.87159 -24.74100 -23.62292 -23.20315 -22.68443 -21.56832 -21.26282 -18.93424 -17.95703 -17.55861 -16.85318 -16.66088 -16.30325 -15.66088 -15.52852 -15.02025 -14.81766 -14.42467 -14.17324 -13.83586 -13.78408 -13.22841 -13.18438 -12.88313 -12.73905 -12.69029 -12.62238 -12.08819 -11.91722 -11.57268 -11.52555 -11.34969 -11.30083 -11.16989 -10.72461 -10.67137 -10.36691 -10.29175 -9.99895 -9.58849 -9.37600 -9.14858 -8.64843 -8.56957 -7.41353 -6.96317 -6.56559 -4.55803 1.16140 2.59451 2.80149 3.05545 3.05815 3.08624 3.12116 3.23591 3.87458 3.91214 4.34668 4.60256 4.77505 4.89017 4.94523 4.98734 5.14749 5.20181 5.24365 5.40193 5.51483 5.64877 5.68045 5.71226 5.74687 5.78563 5.83389 5.86230 5.91054 5.92948 6.06378 6.14680 6.35163 6.52382 6.71363 6.86250 6.95546 7.04140 7.24014 7.28903 8.00688 8.10463 8.15601 8.25360 8.41248 8.57234 9.04495 10.07778 10.23054 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003621 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.590524 B = 7730.966542 C = 8469.109406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.358 6.358 4 C 0.509 3.491 5 O -0.516 6.516 6 C -0.298 4.298 7 C 0.268 3.732 8 N -0.656 5.656 9 C -0.075 4.075 10 C 0.122 3.878 11 N -0.479 5.479 12 C 0.372 3.628 13 C -0.401 4.401 14 H 0.093 0.907 15 C 0.066 3.934 16 N -0.716 5.716 17 Si 0.917 3.083 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.570 5.570 22 C 0.134 3.866 23 C -0.148 4.148 24 C 0.058 3.942 25 N -0.680 5.680 26 C 0.124 3.876 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.127 0.873 34 H 0.275 0.725 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.340 0.660 41 H 0.083 0.917 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 2.012 12.044 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.358 3.642 5 O -0.406 6.406 6 C -0.307 4.307 7 C 0.161 3.839 8 N -0.284 5.284 9 C -0.178 4.178 10 C -0.055 4.055 11 N -0.196 5.196 12 C 0.134 3.866 13 C -0.436 4.436 14 H 0.111 0.889 15 C -0.160 4.160 16 N -0.339 5.339 17 Si 0.741 3.259 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.197 1.197 21 N -0.288 5.288 22 C -0.041 4.041 23 C -0.188 4.188 24 C -0.072 4.072 25 N -0.307 5.307 26 C -0.007 4.007 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.246 0.754 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.157 0.843 41 H 0.101 0.899 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.383 2.434 10.567 14.340 hybrid contribution 0.522 -1.293 0.654 1.540 sum -8.861 1.141 11.222 14.344 Atomic orbital electron populations 1.21787 0.93024 1.02583 1.03314 1.22488 0.95035 0.81598 1.02069 1.86189 1.25259 1.31202 1.84939 1.19557 0.80097 0.90194 0.74353 1.90830 1.60028 1.43501 1.46266 1.20097 0.93878 0.94594 1.22134 1.19318 0.88676 0.89406 0.86499 1.41030 1.51032 1.18405 1.17890 1.19092 1.05653 1.04524 0.88530 1.22775 0.97629 0.95760 0.89312 1.69319 1.08747 1.24129 1.17407 1.19867 0.89790 0.84335 0.92657 1.19262 1.22980 1.04591 0.96782 0.88926 1.26081 0.95447 0.94295 1.00164 1.70115 1.24170 1.07655 1.31914 0.86106 0.80114 0.79481 0.80207 1.18186 1.19711 1.19724 1.68625 1.28191 1.29657 1.02372 1.22242 0.91722 0.95139 0.94994 1.21847 1.00249 0.92225 1.04501 1.22164 0.90412 0.96828 0.97799 1.60989 1.25799 1.38390 1.05489 1.20520 0.93804 0.85161 1.01198 0.90683 0.91590 0.91656 0.91701 0.92173 0.75414 0.85593 0.91384 0.85322 0.89143 0.88289 0.89924 0.89686 0.84342 0.89851 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.77 6.20 37.16 0.23 1.00 16 3 O -0.36 -5.16 9.37 -41.23 -0.39 -5.55 16 4 C 0.51 8.36 7.60 31.90 0.24 8.60 16 5 O -0.52 -9.80 13.37 -19.42 -0.26 -10.06 16 6 C -0.30 -4.37 5.75 -105.15 -0.60 -4.97 16 7 C 0.27 4.09 4.98 -82.05 -0.41 3.68 16 8 N -0.66 -11.65 3.49 -6.75 -0.02 -11.68 16 9 C -0.08 -1.63 6.49 -83.28 -0.54 -2.17 16 10 C 0.12 2.88 9.41 -16.94 -0.16 2.72 16 11 N -0.48 -13.09 7.86 -12.49 -0.10 -13.18 16 12 C 0.37 10.46 7.35 -158.21 -1.16 9.30 16 13 C -0.40 -10.98 9.35 -37.80 -0.35 -11.33 16 14 H 0.09 2.45 7.85 -52.49 -0.41 2.04 16 15 C 0.07 1.67 5.49 -17.34 -0.10 1.58 16 16 N -0.72 -18.67 11.42 55.55 0.63 -18.03 16 17 Si 0.92 18.49 29.57 -169.99 -5.03 13.46 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 N -0.57 -15.12 10.34 -12.49 -0.13 -15.25 16 22 C 0.13 3.08 11.21 -16.94 -0.19 2.89 16 23 C -0.15 -1.89 5.51 -27.92 -0.15 -2.05 16 24 C 0.06 0.64 6.64 -3.56 -0.02 0.62 16 25 N -0.68 -7.22 6.96 -115.05 -0.80 -8.02 16 26 C 0.12 1.48 5.99 -5.25 -0.03 1.45 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.88 7.95 -51.93 -0.41 0.46 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.41 7.00 7.41 -40.82 -0.30 6.70 16 33 H 0.13 2.70 6.28 -52.49 -0.33 2.37 16 34 H 0.27 6.43 8.30 -40.82 -0.34 6.09 16 35 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 36 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.10 1.50 6.20 -51.93 -0.32 1.17 16 38 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.34 3.14 8.76 -39.29 -0.34 2.79 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -31.13 349.77 -9.16 -40.29 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.47 Total: 12.37 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -2.87 Total: 10.37 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.42 Total: -66.16 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.65 Total: -15.61 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.13 -9.16 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170517946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.445 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds