Wall clock time and date at job start Fri Apr 10 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46708 * 2 1 4 4 C 1.34968 * 116.99551 * 184.82515 * 3 2 1 5 5 O 1.21696 * 120.00376 * 5.13988 * 4 3 2 6 6 C 1.41304 * 119.99418 * 185.14717 * 4 3 2 7 7 C 1.34099 * 118.64432 * 185.14227 * 6 4 3 8 8 N 1.36671 * 118.83106 * 0.46574 * 7 6 4 9 9 C 1.38892 * 119.99848 * 118.49847 * 8 7 6 10 10 C 1.40075 * 120.75363 * 351.68418 * 9 8 7 11 11 N 1.31656 * 119.13393 * 179.71332 * 10 9 8 12 12 C 1.33609 * 120.79007 * 0.57342 * 11 10 9 13 13 C 1.41125 * 119.17439 * 179.67642 * 12 11 10 14 14 H 1.07996 * 120.00273 * 185.42108 * 13 12 11 15 15 C 1.40059 * 119.99905 * 5.42551 * 13 12 11 16 16 N 1.30720 * 119.99797 * 354.61254 * 15 13 12 17 17 Si 1.86799 * 120.00070 * 174.61393 * 15 13 12 18 18 H 1.48491 * 109.47250 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46952 * 120.00227 * 17 15 13 20 20 H 1.48503 * 109.46911 * 239.99878 * 17 15 13 21 21 N 1.33612 * 121.65217 * 359.69990 * 12 11 10 22 22 C 1.31645 * 120.79164 * 0.02562 * 21 12 11 23 23 C 1.50377 * 122.33743 * 180.74178 * 7 6 4 24 24 C 1.53226 * 109.58355 * 342.82998 * 23 7 6 25 25 N 1.47176 * 108.47542 * 49.97686 * 24 23 7 26 26 C 1.46818 * 110.36632 * 289.79730 * 25 24 23 27 27 H 1.09006 * 109.46906 * 184.97792 * 1 2 3 28 28 H 1.08998 * 109.47432 * 304.97482 * 1 2 3 29 29 H 1.08996 * 109.47520 * 64.97956 * 1 2 3 30 30 H 1.08991 * 109.47553 * 239.99697 * 2 1 3 31 31 H 1.09003 * 109.47005 * 119.99648 * 2 1 3 32 32 H 0.97003 * 120.00366 * 298.76974 * 8 7 6 33 33 H 1.07998 * 120.42855 * 0.02562 * 10 9 8 34 34 H 0.97002 * 119.99974 * 185.00025 * 16 15 13 35 35 H 1.07998 * 120.43342 * 179.97438 * 22 21 12 36 36 H 1.09008 * 109.43666 * 103.07490 * 23 7 6 37 37 H 1.09000 * 109.43518 * 222.94895 * 23 7 6 38 38 H 1.09001 * 109.82779 * 290.20093 * 24 23 7 39 39 H 1.08998 * 109.69257 * 169.67294 * 24 23 7 40 40 H 1.00896 * 110.99912 * 53.30288 * 25 24 23 41 41 H 1.09000 * 109.34788 * 291.37717 * 26 25 24 42 42 H 1.08991 * 109.35107 * 171.82427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3403 1.5256 -0.1012 5 8 4.0702 0.5686 -0.2809 6 6 3.8893 2.8235 0.0018 7 6 5.2044 2.9836 -0.2064 8 7 5.9602 1.8887 -0.5192 9 6 6.6289 1.8309 -1.7351 10 6 6.4051 2.7991 -2.7224 11 7 7.0606 2.7167 -3.8612 12 6 7.9210 1.7192 -4.0845 13 6 8.6001 1.6601 -5.3202 14 1 9.2311 0.8142 -5.5498 15 6 8.4558 2.6986 -6.2489 16 7 7.6121 3.6698 -6.0174 17 14 9.4690 2.6956 -7.8182 18 1 10.3429 1.4952 -7.8410 19 1 8.5614 2.6702 -8.9933 20 1 10.3086 3.9195 -7.8677 21 7 8.1542 0.7759 -3.1674 22 6 7.5377 0.7995 -2.0045 23 6 5.8780 4.3240 -0.1020 24 6 4.8244 5.4347 -0.1662 25 7 3.7578 5.1221 0.7986 26 6 2.9760 3.9673 0.3395 27 1 -0.3633 -1.0239 0.0892 28 1 -0.3634 0.5890 0.8420 29 1 -0.3634 0.4346 -0.9312 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 6.0265 1.1503 0.1063 33 1 5.7078 3.6055 -2.5496 34 1 7.4587 4.3500 -6.6918 35 1 7.7303 0.0339 -1.2676 36 1 6.4183 4.3858 0.8427 37 1 6.5787 4.4431 -0.9284 38 1 4.4047 5.4886 -1.1707 39 1 5.2817 6.3901 0.0910 40 1 4.1389 4.9582 1.7184 41 1 2.4048 4.2468 -0.5457 42 1 2.2888 3.6600 1.1278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170517946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:58 Heat of formation + Delta-G solvation = -22.992827 kcal Electronic energy + Delta-G solvation = -26879.025170 eV Core-core repulsion = 23052.142152 eV Total energy + Delta-G solvation = -3826.883018 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17577 -41.03499 -39.80762 -37.84355 -36.89729 -35.41277 -33.83518 -33.21987 -32.26382 -31.82843 -30.39007 -27.61898 -25.86552 -24.94412 -24.83113 -23.84933 -23.10893 -22.52507 -20.21358 -19.81626 -18.91891 -18.28706 -18.07951 -17.55955 -17.28603 -16.83282 -16.53255 -16.22191 -15.88300 -15.36368 -15.09460 -14.98006 -14.75641 -14.50620 -14.38549 -13.92392 -13.84914 -13.68715 -13.54635 -13.06979 -12.96121 -12.91124 -12.67022 -12.55948 -12.47559 -12.15876 -12.09678 -11.95886 -11.57189 -11.45176 -11.36953 -11.27934 -10.89943 -10.02561 -9.54167 -9.34727 -8.65630 -8.41988 -6.49303 -0.15527 0.76897 0.90621 1.41263 1.50205 1.58078 1.87397 1.96486 2.22360 2.53213 2.74725 3.38587 3.63890 3.82661 3.88357 3.92530 3.95622 3.98327 4.07555 4.10977 4.16978 4.20395 4.31963 4.39747 4.46240 4.62173 4.68544 4.84088 4.88157 4.90974 4.92788 5.05665 5.11577 5.14330 5.23146 5.36143 5.43179 5.56197 5.90903 6.14193 6.39844 6.45087 6.48203 6.67173 6.74473 6.85900 7.15044 8.15833 8.39539 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003621 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.590524 B = 7730.966542 C = 8469.109406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.502 3.498 5 O -0.546 6.546 6 C -0.283 4.283 7 C 0.252 3.748 8 N -0.658 5.658 9 C -0.041 4.041 10 C 0.106 3.894 11 N -0.507 5.507 12 C 0.342 3.658 13 C -0.444 4.444 14 H 0.086 0.914 15 C 0.026 3.974 16 N -0.753 5.753 17 Si 0.997 3.003 18 H -0.258 1.258 19 H -0.261 1.261 20 H -0.262 1.262 21 N -0.592 5.592 22 C 0.113 3.887 23 C -0.140 4.140 24 C 0.064 3.936 25 N -0.670 5.670 26 C 0.128 3.872 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.409 0.591 33 H 0.143 0.857 34 H 0.284 0.716 35 H 0.158 0.842 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.352 0.648 41 H 0.082 0.918 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 3.026 13.393 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.352 3.648 5 O -0.438 6.438 6 C -0.291 4.291 7 C 0.148 3.852 8 N -0.287 5.287 9 C -0.144 4.144 10 C -0.070 4.070 11 N -0.224 5.224 12 C 0.102 3.898 13 C -0.480 4.480 14 H 0.104 0.896 15 C -0.196 4.196 16 N -0.376 5.376 17 Si 0.816 3.184 18 H -0.182 1.182 19 H -0.185 1.185 20 H -0.187 1.187 21 N -0.312 5.312 22 C -0.060 4.060 23 C -0.180 4.180 24 C -0.066 4.066 25 N -0.298 5.298 26 C -0.003 4.003 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.250 0.750 33 H 0.161 0.839 34 H 0.095 0.905 35 H 0.175 0.825 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.171 0.829 41 H 0.100 0.900 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.829 3.478 12.022 16.549 hybrid contribution 0.695 -1.666 0.537 1.883 sum -10.134 1.812 12.559 16.239 Atomic orbital electron populations 1.21797 0.90100 1.04284 1.03702 1.22773 0.97310 0.80394 1.01518 1.86196 1.23992 1.32615 1.84286 1.19979 0.80702 0.90455 0.73635 1.90820 1.60857 1.44623 1.47546 1.20496 0.93986 0.94878 1.19761 1.19767 0.88834 0.89748 0.86831 1.40924 1.51274 1.19655 1.16814 1.19031 1.03462 1.02539 0.89412 1.23050 0.97937 0.96894 0.89113 1.69249 1.09493 1.24514 1.19121 1.20206 0.90801 0.85206 0.93551 1.19509 1.24596 1.05879 0.98034 0.89617 1.26968 0.96220 0.93172 1.03263 1.70171 1.25547 1.08389 1.33507 0.84943 0.78315 0.79559 0.75554 1.18183 1.18543 1.18671 1.68609 1.29330 1.29819 1.03421 1.22743 0.92051 0.96433 0.94800 1.21862 1.00260 0.91251 1.04671 1.22167 0.89908 0.97124 0.97445 1.60983 1.25547 1.37279 1.05982 1.20575 0.93527 0.84423 1.01766 0.88470 0.90452 0.91845 0.93565 0.91496 0.75026 0.83947 0.90544 0.82462 0.86865 0.90606 0.91187 0.87294 0.82927 0.90018 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.05 1.26 6.20 71.98 0.45 1.70 16 3 O -0.35 -9.63 9.37 -58.85 -0.55 -10.18 16 4 C 0.50 15.90 7.60 68.57 0.52 16.42 16 5 O -0.55 -20.49 13.37 19.19 0.26 -20.23 16 6 C -0.28 -7.78 5.75 -20.21 -0.12 -7.90 16 7 C 0.25 7.33 4.98 40.76 0.20 7.53 16 8 N -0.66 -22.95 3.49 -175.28 -0.61 -23.56 16 9 C -0.04 -1.77 6.49 38.92 0.25 -1.52 16 10 C 0.11 5.09 9.41 85.17 0.80 5.89 16 11 N -0.51 -28.67 7.86 -193.43 -1.52 -30.19 16 12 C 0.34 20.12 7.35 134.94 0.99 21.11 16 13 C -0.44 -25.43 9.35 23.42 0.22 -25.21 16 14 H 0.09 4.79 7.85 -2.91 -0.02 4.77 16 15 C 0.03 1.36 5.49 85.30 0.47 1.83 16 16 N -0.75 -40.33 11.42 21.84 0.25 -40.08 16 17 Si 1.00 38.59 29.57 68.60 2.03 40.62 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 21 N -0.59 -32.58 10.34 -193.44 -2.00 -34.59 16 22 C 0.11 5.31 11.21 85.17 0.95 6.27 16 23 C -0.14 -3.33 5.51 29.82 0.16 -3.17 16 24 C 0.06 1.25 6.64 86.33 0.57 1.82 16 25 N -0.67 -12.03 6.96 -517.90 -3.61 -15.64 16 26 C 0.13 2.70 5.99 85.42 0.51 3.21 16 27 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.24 7.95 -2.39 -0.02 1.22 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.41 13.82 7.41 -92.71 -0.69 13.13 16 33 H 0.14 6.18 6.28 -2.91 -0.02 6.16 16 34 H 0.28 13.51 8.30 -92.71 -0.77 12.74 16 35 H 0.16 6.25 8.06 -2.91 -0.02 6.23 16 36 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.08 2.23 6.20 -2.39 -0.01 2.22 16 38 H 0.07 1.58 8.07 -2.39 -0.02 1.56 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.35 5.15 8.76 -89.70 -0.79 4.36 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 1.78 7.96 -2.39 -0.02 1.76 16 Total: -1.00 -70.46 349.77 0.58 -69.88 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -0.39 Total: 37.41 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 6.73 Total: 26.56 kcal Atomic # 7 Polarization: -136.57 SS G_CDS: -7.49 Total: -144.05 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.29 Total: -30.41 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -70.46 0.58 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170517946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.883 kcal (2) G-P(sol) polarization free energy of solvation -70.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds