Wall clock time and date at job start Fri Apr 10 2020 18:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40166 * 119.82173 * 2 1 4 4 C 1.35687 * 119.26689 * 179.76335 * 3 2 1 5 5 C 1.50705 * 120.48252 * 180.24164 * 4 3 2 6 6 N 1.36164 * 119.02992 * 0.50958 * 4 3 2 7 7 N 1.40104 * 133.22528 * 179.76801 * 6 4 3 8 8 C 1.31981 * 106.92424 * 179.97438 * 7 6 4 9 9 C 1.48133 * 125.32263 * 179.97438 * 8 7 6 10 10 O 1.21525 * 120.00006 * 0.02795 * 9 8 7 11 11 N 1.34771 * 120.00032 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00186 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47244 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47252 * 180.02562 * 13 12 11 15 15 N 1.46492 * 109.47197 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00079 * 180.02562 * 15 14 13 17 17 H 1.08009 * 120.00035 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00291 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00269 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47223 * 60.00091 * 20 18 16 22 22 H 1.48493 * 109.47507 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46967 * 300.00332 * 20 18 16 24 24 N 1.33464 * 109.35369 * 0.02562 * 8 7 6 25 25 C 1.32495 * 109.75532 * 359.97438 * 24 8 7 26 26 N 1.31258 * 119.81528 * 180.27635 * 2 1 3 27 27 H 1.08999 * 109.47015 * 269.72693 * 1 2 3 28 28 H 1.09000 * 109.46646 * 29.71845 * 1 2 3 29 29 H 1.09000 * 109.47248 * 149.72563 * 1 2 3 30 30 H 1.08000 * 120.36901 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.47346 * 270.26825 * 5 4 3 32 32 H 1.08999 * 109.46716 * 30.26990 * 5 4 3 33 33 H 1.09001 * 109.46865 * 150.26276 * 5 4 3 34 34 H 0.96999 * 120.00258 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46967 * 300.00012 * 12 11 9 36 36 H 1.09005 * 109.46946 * 59.99785 * 12 11 9 37 37 H 1.09001 * 109.47413 * 300.00063 * 13 12 11 38 38 H 1.09005 * 109.47060 * 60.00179 * 13 12 11 39 39 H 1.09001 * 109.46876 * 300.00286 * 14 13 12 40 40 H 1.08997 * 109.47181 * 59.99780 * 14 13 12 41 41 H 0.96994 * 120.00433 * 359.97438 * 15 14 13 42 42 H 0.97003 * 120.00493 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2041 1.2160 0.0000 4 6 3.5609 1.2029 0.0049 5 6 4.3379 2.4942 0.0105 6 7 4.2101 0.0060 -0.0009 7 7 5.5650 -0.3506 -0.0025 8 6 5.6151 -1.6695 -0.0084 9 6 6.8554 -2.4795 -0.0126 10 8 7.9396 -1.9305 -0.0101 11 7 6.7814 -3.8251 -0.0191 12 6 8.0080 -4.6262 -0.0238 13 6 7.6463 -6.1128 -0.0301 14 6 8.9273 -6.9494 -0.0344 15 7 8.5809 -8.3728 -0.0411 16 6 9.5713 -9.3185 -0.0452 17 1 10.6079 -9.0149 -0.0440 18 6 9.2431 -10.6672 -0.0510 19 7 7.9801 -11.0371 -0.0530 20 14 10.5942 -11.9572 -0.0560 21 1 11.4352 -11.7979 1.1575 22 1 9.9854 -13.3116 -0.0626 23 1 11.4361 -11.7876 -1.2675 24 7 4.3736 -2.1593 -0.0112 25 6 3.4994 -1.1636 -0.0065 26 7 2.1597 -1.1388 -0.0055 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3632 0.8925 -0.5095 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6672 2.1531 0.0004 31 1 4.5249 2.8102 -1.0157 32 1 3.7628 3.2620 0.5281 33 1 5.2880 2.3443 0.5234 34 1 5.9160 -4.2633 -0.0206 35 1 8.5926 -4.3903 -0.9130 36 1 8.5938 -4.3989 0.8670 37 1 7.0619 -6.3484 0.8593 38 1 7.0603 -6.3403 -0.9207 39 1 9.5120 -6.7139 -0.9236 40 1 9.5129 -6.7218 0.8563 41 1 7.6501 -8.6455 -0.0418 42 1 7.7507 -11.9796 -0.0575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175231825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:03 Heat of formation + Delta-G solvation = 106.035371 kcal Electronic energy + Delta-G solvation = -24683.761331 eV Core-core repulsion = 20894.766147 eV Total energy + Delta-G solvation = -3788.995185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.41838 -40.14022 -39.05924 -36.07906 -35.97578 -34.40098 -32.99738 -32.14890 -31.73157 -29.78820 -29.49887 -28.48153 -26.26918 -24.50844 -23.50773 -22.59159 -22.03138 -21.19652 -20.39761 -18.99643 -18.57993 -17.51406 -17.30507 -16.85891 -15.96299 -15.73401 -15.57687 -14.81057 -14.70838 -14.62007 -14.36267 -14.03731 -14.02515 -13.79716 -13.25460 -13.22504 -13.15679 -12.98922 -12.83923 -12.57357 -12.32097 -12.00472 -11.65088 -10.96295 -10.88214 -10.80856 -10.76304 -10.58072 -10.55251 -10.41517 -10.12844 -10.04311 -9.67230 -9.26512 -9.15855 -8.83625 -6.89403 -5.72847 -3.01909 -0.20617 0.09060 1.21117 1.40782 2.48651 2.66211 2.82119 3.11924 3.40150 3.47828 3.51628 3.53045 3.63037 3.95100 4.22549 4.44088 4.52740 4.57388 4.62579 4.70806 4.88762 4.92233 5.00294 5.11713 5.25928 5.32585 5.40941 5.51848 5.54430 5.61051 5.64797 5.69953 5.93202 6.08004 6.21954 6.33269 6.36305 6.82946 6.87127 6.88595 7.14856 7.44654 7.73374 7.91977 8.46006 9.56935 10.14439 10.49086 11.50028 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.001877 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.333280 B =14914.173136 C =15939.152345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.237 3.763 3 C -0.224 4.224 4 C 0.206 3.794 5 C -0.124 4.124 6 N -0.331 5.331 7 N -0.269 5.269 8 C 0.244 3.756 9 C 0.608 3.392 10 O -0.509 6.509 11 N -0.697 5.697 12 C 0.122 3.878 13 C -0.139 4.139 14 C 0.157 3.843 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 N -0.500 5.500 25 C 0.453 3.547 26 N -0.458 5.458 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.176 0.824 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 32.761 0.167 37.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 C -0.249 4.249 4 C 0.089 3.911 5 C -0.181 4.181 6 N -0.113 5.113 7 N -0.103 5.103 8 C -0.040 4.040 9 C 0.387 3.613 10 O -0.381 6.381 11 N -0.349 5.349 12 C 0.000 4.000 13 C -0.177 4.177 14 C 0.029 3.971 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 N -0.235 5.235 25 C 0.093 3.907 26 N -0.175 5.175 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.193 0.807 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.873 32.102 0.162 36.267 hybrid contribution 0.081 -0.251 0.001 0.264 sum -16.792 31.851 0.163 36.006 Atomic orbital electron populations 1.20921 0.85921 1.05138 1.04714 1.22115 0.98257 0.86729 0.85770 1.21681 0.91304 1.01557 1.10315 1.20939 0.92079 0.86494 0.91581 1.21106 1.01220 0.90585 1.05193 1.49027 1.07441 1.08053 1.46766 1.78871 0.88998 1.13244 1.29169 1.24257 0.93148 0.89648 0.96985 1.16291 0.84447 0.82192 0.78348 1.90862 1.26736 1.71580 1.48903 1.45836 1.11961 1.04549 1.72536 1.21538 0.85144 0.90291 1.03077 1.21968 1.00610 0.91950 1.03206 1.20513 0.93063 0.85276 0.98273 1.42326 1.06749 0.99099 1.89610 1.19202 0.88515 0.86685 1.42763 0.91133 1.24758 0.96235 0.97078 1.03028 1.69652 1.15295 1.15599 1.57725 0.86237 0.80918 0.80986 0.77858 1.21251 1.21695 1.21256 1.70853 0.97570 1.26890 1.28142 1.22637 0.90156 0.81585 0.96338 1.67916 1.01521 1.28924 1.19090 0.88502 0.89058 0.88944 0.80698 0.88308 0.88202 0.88901 0.74918 0.90628 0.90633 0.90967 0.90961 0.95969 0.95969 0.78231 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.21 10.19 36.01 0.37 0.16 16 2 C 0.24 1.41 6.83 -82.11 -0.56 0.85 16 3 C -0.22 -0.88 9.39 -39.77 -0.37 -1.26 16 4 C 0.21 1.39 6.86 -81.58 -0.56 0.83 16 5 C -0.12 -0.44 10.13 36.01 0.36 -0.07 16 6 N -0.33 -3.83 3.91 -10.07 -0.04 -3.87 16 7 N -0.27 -3.86 12.67 32.02 0.41 -3.45 16 8 C 0.24 3.68 7.92 -156.79 -1.24 2.43 16 9 C 0.61 9.46 7.84 -12.20 -0.10 9.37 16 10 O -0.51 -9.17 17.07 5.34 0.09 -9.08 16 11 N -0.70 -9.65 5.55 -61.16 -0.34 -9.99 16 12 C 0.12 1.75 5.67 -4.04 -0.02 1.72 16 13 C -0.14 -2.22 5.44 -26.73 -0.15 -2.37 16 14 C 0.16 3.19 6.26 -4.04 -0.03 3.16 16 15 N -0.73 -19.05 5.60 -59.91 -0.34 -19.39 16 16 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 17 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 20 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 N -0.50 -7.42 10.89 -12.23 -0.13 -7.55 16 25 C 0.45 5.95 8.99 -323.04 -2.90 3.05 16 26 N -0.46 -4.92 10.40 -10.01 -0.10 -5.02 16 27 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.09 -0.08 8.09 -51.93 -0.42 -0.50 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.18 -0.11 8.06 -52.49 -0.42 -0.54 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.03 8.09 -51.93 -0.42 -0.39 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.41 5.28 8.14 -40.82 -0.33 4.95 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -38.03 368.63 -10.32 -48.35 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.68 Total: 4.41 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -5.44 Total: 10.28 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: 0.18 Total: -77.34 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.03 -10.32 -48.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175231825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.384 kcal (2) G-P(sol) polarization free energy of solvation -38.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds