Wall clock time and date at job start Fri Apr 10 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40166 * 119.82173 * 2 1 4 4 C 1.35687 * 119.26689 * 179.76335 * 3 2 1 5 5 C 1.50705 * 120.48252 * 180.24164 * 4 3 2 6 6 N 1.36164 * 119.02992 * 0.50958 * 4 3 2 7 7 N 1.40104 * 133.22528 * 179.76801 * 6 4 3 8 8 C 1.31981 * 106.92424 * 179.97438 * 7 6 4 9 9 C 1.48133 * 125.32263 * 179.97438 * 8 7 6 10 10 O 1.21525 * 120.00006 * 0.02795 * 9 8 7 11 11 N 1.34771 * 120.00032 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00186 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47244 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47252 * 180.02562 * 13 12 11 15 15 N 1.46492 * 109.47197 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00079 * 180.02562 * 15 14 13 17 17 H 1.08009 * 120.00035 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00291 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00269 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47223 * 60.00091 * 20 18 16 22 22 H 1.48493 * 109.47507 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46967 * 300.00332 * 20 18 16 24 24 N 1.33464 * 109.35369 * 0.02562 * 8 7 6 25 25 C 1.32495 * 109.75532 * 359.97438 * 24 8 7 26 26 N 1.31258 * 119.81528 * 180.27635 * 2 1 3 27 27 H 1.08999 * 109.47015 * 269.72693 * 1 2 3 28 28 H 1.09000 * 109.46646 * 29.71845 * 1 2 3 29 29 H 1.09000 * 109.47248 * 149.72563 * 1 2 3 30 30 H 1.08000 * 120.36901 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.47346 * 270.26825 * 5 4 3 32 32 H 1.08999 * 109.46716 * 30.26990 * 5 4 3 33 33 H 1.09001 * 109.46865 * 150.26276 * 5 4 3 34 34 H 0.96999 * 120.00258 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46967 * 300.00012 * 12 11 9 36 36 H 1.09005 * 109.46946 * 59.99785 * 12 11 9 37 37 H 1.09001 * 109.47413 * 300.00063 * 13 12 11 38 38 H 1.09005 * 109.47060 * 60.00179 * 13 12 11 39 39 H 1.09001 * 109.46876 * 300.00286 * 14 13 12 40 40 H 1.08997 * 109.47181 * 59.99780 * 14 13 12 41 41 H 0.96994 * 120.00433 * 359.97438 * 15 14 13 42 42 H 0.97003 * 120.00493 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2041 1.2160 0.0000 4 6 3.5609 1.2029 0.0049 5 6 4.3379 2.4942 0.0105 6 7 4.2101 0.0060 -0.0009 7 7 5.5650 -0.3506 -0.0025 8 6 5.6151 -1.6695 -0.0084 9 6 6.8554 -2.4795 -0.0126 10 8 7.9396 -1.9305 -0.0101 11 7 6.7814 -3.8251 -0.0191 12 6 8.0080 -4.6262 -0.0238 13 6 7.6463 -6.1128 -0.0301 14 6 8.9273 -6.9494 -0.0344 15 7 8.5809 -8.3728 -0.0411 16 6 9.5713 -9.3185 -0.0452 17 1 10.6079 -9.0149 -0.0440 18 6 9.2431 -10.6672 -0.0510 19 7 7.9801 -11.0371 -0.0530 20 14 10.5942 -11.9572 -0.0560 21 1 11.4352 -11.7979 1.1575 22 1 9.9854 -13.3116 -0.0626 23 1 11.4361 -11.7876 -1.2675 24 7 4.3736 -2.1593 -0.0112 25 6 3.4994 -1.1636 -0.0065 26 7 2.1597 -1.1388 -0.0055 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3632 0.8925 -0.5095 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6672 2.1531 0.0004 31 1 4.5249 2.8102 -1.0157 32 1 3.7628 3.2620 0.5281 33 1 5.2880 2.3443 0.5234 34 1 5.9160 -4.2633 -0.0206 35 1 8.5926 -4.3903 -0.9130 36 1 8.5938 -4.3989 0.8670 37 1 7.0619 -6.3484 0.8593 38 1 7.0603 -6.3403 -0.9207 39 1 9.5120 -6.7139 -0.9236 40 1 9.5129 -6.7218 0.8563 41 1 7.6501 -8.6455 -0.0418 42 1 7.7507 -11.9796 -0.0575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175231825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:02 Heat of formation + Delta-G solvation = 79.168949 kcal Electronic energy + Delta-G solvation = -24684.926347 eV Core-core repulsion = 20894.766147 eV Total energy + Delta-G solvation = -3790.160200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.21846 -41.15066 -39.93156 -37.59124 -36.58988 -36.05649 -33.94134 -33.51232 -32.67101 -31.38254 -30.22702 -28.83857 -27.61687 -25.96460 -24.41581 -23.97471 -22.79114 -22.62915 -21.55152 -19.77456 -19.36804 -19.11924 -18.31169 -18.13317 -17.24525 -16.93845 -16.53478 -16.04267 -15.84023 -15.43615 -15.30293 -15.25260 -14.84739 -14.73291 -14.60939 -14.22276 -13.92968 -13.86913 -13.44611 -13.32099 -13.06338 -12.90509 -12.78892 -12.68739 -12.64857 -12.47946 -12.12261 -12.09283 -11.84854 -11.74913 -11.61029 -11.14888 -10.92895 -10.83085 -10.34842 -9.99941 -9.01274 -7.95372 -5.24983 -0.82230 -0.61186 0.47606 0.48675 1.47582 1.51431 1.52925 1.57645 1.81617 2.03085 2.19378 2.56341 2.78626 3.08885 3.14363 3.38082 3.68241 3.71010 3.97747 4.05485 4.15821 4.25506 4.26294 4.40362 4.43555 4.51503 4.60999 4.67833 4.70249 4.79462 4.80530 4.84068 4.86800 5.05816 5.07520 5.18528 5.30583 5.30681 5.32862 5.49323 6.02120 6.24310 6.27076 6.51828 6.76313 7.33004 8.08171 8.31589 9.28016 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.026376 B = 0.001877 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.333280 B =14914.173136 C =15939.152345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.238 3.762 3 C -0.189 4.189 4 C 0.176 3.824 5 C -0.119 4.119 6 N -0.333 5.333 7 N -0.293 5.293 8 C 0.227 3.773 9 C 0.611 3.389 10 O -0.541 6.541 11 N -0.686 5.686 12 C 0.132 3.868 13 C -0.121 4.121 14 C 0.153 3.847 15 N -0.748 5.748 16 C -0.250 4.250 17 H 0.077 0.923 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.277 1.277 24 N -0.531 5.531 25 C 0.436 3.564 26 N -0.496 5.496 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.236 0.764 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.068 0.932 34 H 0.420 0.580 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.375 0.625 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 35.532 0.184 40.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.076 3.924 3 C -0.213 4.213 4 C 0.061 3.939 5 C -0.176 4.176 6 N -0.115 5.115 7 N -0.128 5.128 8 C -0.057 4.057 9 C 0.392 3.608 10 O -0.415 6.415 11 N -0.338 5.338 12 C 0.009 3.991 13 C -0.159 4.159 14 C 0.027 3.973 15 N -0.391 5.391 16 C -0.382 4.382 17 H 0.095 0.905 18 C -0.270 4.270 19 N -0.620 5.620 20 Si 0.806 3.194 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.203 1.203 24 N -0.267 5.267 25 C 0.076 3.924 26 N -0.216 5.216 27 H 0.132 0.868 28 H 0.149 0.851 29 H 0.100 0.900 30 H 0.252 0.748 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.258 0.742 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.207 0.793 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.715 34.946 0.180 39.642 hybrid contribution 0.403 -0.887 -0.003 0.974 sum -18.312 34.059 0.177 38.670 Atomic orbital electron populations 1.21170 0.82641 1.06621 1.06080 1.23077 1.00168 0.86349 0.82808 1.22408 0.89987 1.03025 1.05844 1.21916 0.93486 0.86098 0.92433 1.21242 1.00403 0.89902 1.06057 1.49093 1.06231 1.09386 1.46811 1.78682 0.91235 1.12948 1.29941 1.23960 0.93055 0.89983 0.98722 1.16374 0.84428 0.82399 0.77641 1.90824 1.27899 1.72196 1.50627 1.45712 1.12099 1.04177 1.71832 1.21374 0.85265 0.89061 1.03386 1.21727 0.98527 0.92245 1.03434 1.20668 0.95172 0.83123 0.98383 1.42547 1.05896 1.01049 1.89592 1.19637 0.89402 0.87586 1.41553 0.90509 1.25631 0.98533 0.99263 1.03563 1.69813 1.17268 1.15617 1.59310 0.85157 0.78174 0.77859 0.78232 1.20319 1.22019 1.20328 1.70697 0.97760 1.28516 1.29749 1.22815 0.91021 0.81849 0.96756 1.68041 1.00296 1.31565 1.21654 0.86790 0.85053 0.89990 0.74795 0.87318 0.83976 0.91348 0.74234 0.90361 0.90370 0.90773 0.90767 0.95542 0.95537 0.79314 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.02 10.19 71.24 0.73 0.74 16 2 C 0.24 2.17 6.83 43.11 0.29 2.46 16 3 C -0.19 -0.70 9.39 22.15 0.21 -0.49 16 4 C 0.18 2.01 6.86 41.30 0.28 2.29 16 5 C -0.12 -0.54 10.13 71.24 0.72 0.18 16 6 N -0.33 -7.80 3.91 -185.76 -0.73 -8.53 16 7 N -0.29 -8.84 12.67 -52.60 -0.67 -9.51 16 8 C 0.23 7.27 7.92 137.40 1.09 8.36 16 9 C 0.61 20.01 7.84 86.87 0.68 20.69 16 10 O -0.54 -20.38 17.07 -3.80 -0.06 -20.44 16 11 N -0.69 -19.65 5.55 -465.69 -2.59 -22.24 16 12 C 0.13 3.79 5.67 86.38 0.49 4.28 16 13 C -0.12 -3.87 5.44 30.59 0.17 -3.70 16 14 C 0.15 6.22 6.26 86.38 0.54 6.76 16 15 N -0.75 -39.20 5.60 -343.46 -1.92 -41.12 16 16 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 19 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 20 Si 0.98 47.14 29.55 68.60 2.03 49.16 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 N -0.53 -16.71 10.89 -192.62 -2.10 -18.81 16 25 C 0.44 11.79 8.99 261.57 2.35 14.14 16 26 N -0.50 -10.47 10.40 -185.59 -1.93 -12.40 16 27 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.13 -1.01 8.09 -2.39 -0.02 -1.03 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.24 -2.03 8.06 -2.91 -0.02 -2.06 16 31 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.14 -0.60 8.09 -2.39 -0.02 -0.62 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.42 11.15 8.14 -92.71 -0.76 10.39 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.37 20.70 7.67 -92.71 -0.71 19.99 16 42 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -87.31 368.63 0.78 -86.54 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.40 Total: 19.63 kcal Atomic # 6 Polarization: 29.19 SS G_CDS: 8.86 Total: 38.05 kcal Atomic # 7 Polarization: -163.28 SS G_CDS: -9.65 Total: -172.93 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -87.31 0.78 -86.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175231825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.706 kcal (2) G-P(sol) polarization free energy of solvation -87.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds