Wall clock time and date at job start Fri Apr 10 2020 18:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36441 * 126.31876 * 2 1 4 4 O 1.35275 * 125.02141 * 0.04542 * 3 2 1 5 5 N 1.30724 * 109.96420 * 179.77073 * 3 2 1 6 6 C 1.35982 * 109.53466 * 0.23697 * 5 3 2 7 7 C 1.39346 * 133.39883 * 179.97438 * 6 5 3 8 8 C 1.39204 * 119.51871 * 180.02562 * 7 6 5 9 9 C 1.47667 * 119.92023 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99498 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00023 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47286 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47243 * 180.02562 * 13 12 11 15 15 N 1.46502 * 109.46896 * 180.02562 * 14 13 12 16 16 C 1.36938 * 119.99730 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99868 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99943 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00117 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00076 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47060 * 89.99547 * 20 18 16 22 22 H 1.48496 * 109.47055 * 209.99522 * 20 18 16 23 23 H 1.48499 * 109.46967 * 330.00008 * 20 18 16 24 24 C 1.40075 * 120.16590 * 359.93018 * 8 7 6 25 25 C 1.36520 * 120.44045 * 0.04487 * 24 8 7 26 26 C 1.38124 * 126.32013 * 180.17287 * 2 1 3 27 27 H 1.09005 * 109.46875 * 90.02276 * 1 2 3 28 28 H 1.08997 * 109.47142 * 210.01965 * 1 2 3 29 29 H 1.09003 * 109.47011 * 330.02351 * 1 2 3 30 30 H 0.96700 * 113.99596 * 269.71588 * 4 3 2 31 31 H 1.08005 * 120.23901 * 0.02562 * 7 6 5 32 32 H 0.97004 * 119.99977 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47429 * 300.00776 * 12 11 9 34 34 H 1.09005 * 109.47298 * 60.00062 * 12 11 9 35 35 H 1.09001 * 109.47047 * 300.00038 * 13 12 11 36 36 H 1.08999 * 109.46706 * 60.00151 * 13 12 11 37 37 H 1.09001 * 109.46929 * 299.99864 * 14 13 12 38 38 H 1.08998 * 109.46876 * 60.00054 * 14 13 12 39 39 H 0.96994 * 120.00276 * 359.97438 * 15 14 13 40 40 H 0.97003 * 119.99722 * 180.02562 * 19 18 16 41 41 H 1.08004 * 119.78270 * 180.02562 * 24 8 7 42 42 H 1.07999 * 119.91846 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8403 2.3810 0.0009 5 7 3.5275 0.7313 0.0049 6 6 3.6029 -0.6265 0.0031 7 6 4.6670 -1.5262 0.0059 8 6 4.4085 -2.8941 0.0021 9 6 5.5294 -3.8554 0.0045 10 8 6.6762 -3.4519 0.0092 11 7 5.2811 -5.1801 0.0014 12 6 6.3931 -6.1338 0.0031 13 6 5.8412 -7.5608 -0.0017 14 6 7.0026 -8.5568 0.0008 15 7 6.4740 -9.9232 -0.0044 16 6 7.3331 -10.9896 -0.0028 17 1 8.4002 -10.8233 0.0019 18 6 6.8324 -12.2842 -0.0072 19 7 7.6581 -13.3092 -0.0062 20 14 4.9866 -12.5717 -0.0161 21 1 4.5039 -12.6455 -1.4186 22 1 4.6810 -13.8471 0.6803 23 1 4.3077 -11.4510 0.6827 24 6 3.0878 -3.3609 -0.0029 25 6 2.0435 -2.4816 -0.0051 26 6 2.2831 -1.1129 -0.0034 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5135 30 1 1.7181 2.7554 -0.8823 31 1 5.6848 -1.1649 0.0109 32 1 4.3660 -5.5021 -0.0027 33 1 7.0062 -5.9787 -0.8846 34 1 7.0007 -5.9819 0.8953 35 1 5.2279 -7.7161 0.8860 36 1 5.2339 -7.7124 -0.8940 37 1 7.6162 -8.4016 -0.8866 38 1 7.6095 -8.4050 0.8934 39 1 5.5157 -10.0725 -0.0083 40 1 7.3081 -14.2139 -0.0097 41 1 2.8944 -4.4234 -0.0053 42 1 1.0285 -2.8508 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177026369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:07 Heat of formation + Delta-G solvation = 20.485050 kcal Electronic energy + Delta-G solvation = -24671.510208 eV Core-core repulsion = 20846.512532 eV Total energy + Delta-G solvation = -3824.997676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.74379 -40.05429 -38.48200 -36.81677 -36.14615 -34.92598 -34.48263 -32.09253 -31.12154 -30.34112 -29.24438 -27.74062 -25.69163 -23.85598 -23.27282 -22.16476 -21.38563 -21.32850 -20.62993 -19.16470 -18.40098 -17.70818 -17.45591 -17.11326 -16.21146 -16.03459 -15.72744 -15.23640 -14.74192 -14.59071 -14.49082 -14.43603 -14.09379 -13.74054 -13.61947 -13.45554 -13.27664 -12.81027 -12.78741 -12.58336 -12.04240 -11.86486 -11.81606 -11.19019 -11.04867 -10.97838 -10.85256 -10.71086 -10.51436 -10.18691 -10.03346 -9.59781 -9.17666 -8.90662 -8.81094 -8.65151 -7.24579 -5.77013 -3.13122 0.36072 0.56591 1.63445 2.02371 2.67676 2.90605 3.17780 3.35469 3.37656 3.43827 3.54773 3.81150 4.03949 4.35623 4.45105 4.49861 4.58019 4.68500 4.74420 4.80003 4.83143 4.97547 5.13904 5.21214 5.50121 5.52002 5.53585 5.71702 5.78922 5.86412 5.89250 5.93591 5.96986 6.00939 6.14062 6.18913 6.37736 6.69181 6.72232 6.89097 7.20129 7.38616 7.99337 8.09817 8.41765 9.20593 9.92584 10.12043 11.41337 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.001902 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.452827 B =14720.642738 C =15643.438926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.495 5.495 3 C 0.448 3.552 4 O -0.441 6.441 5 N -0.476 5.476 6 C 0.047 3.953 7 C 0.008 3.992 8 C -0.140 4.140 9 C 0.560 3.440 10 O -0.535 6.535 11 N -0.723 5.723 12 C 0.122 3.878 13 C -0.142 4.142 14 C 0.160 3.840 15 N -0.757 5.757 16 C -0.245 4.245 17 H 0.091 0.909 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.887 3.113 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.067 4.067 25 C -0.112 4.112 26 C 0.075 3.925 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.410 0.590 31 H 0.148 0.852 32 H 0.399 0.601 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.137 0.863 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.357 31.281 -1.698 37.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.197 5.197 3 C 0.145 3.855 4 O -0.242 6.242 5 N -0.206 5.206 6 C -0.071 4.071 7 C -0.013 4.013 8 C -0.146 4.146 9 C 0.347 3.653 10 O -0.413 6.413 11 N -0.375 5.375 12 C -0.001 4.001 13 C -0.180 4.180 14 C 0.032 3.968 15 N -0.402 5.402 16 C -0.375 4.375 17 H 0.109 0.891 18 C -0.193 4.193 19 N -0.582 5.582 20 Si 0.717 3.283 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.088 4.088 25 C -0.133 4.133 26 C -0.035 4.035 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.269 0.731 31 H 0.166 0.834 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.155 0.845 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.752 32.039 -1.085 37.139 hybrid contribution -2.776 -0.779 -0.484 2.924 sum -21.528 31.260 -1.568 37.988 Atomic orbital electron populations 1.22049 0.75667 1.05268 1.03763 1.45601 1.07665 1.05201 1.61222 1.20377 0.83961 0.81310 0.99864 1.84814 1.86363 1.18386 1.34646 1.70741 1.15434 1.11363 1.23051 1.18621 0.92068 0.89297 1.07131 1.20397 0.98526 0.89778 0.92554 1.19638 0.93374 0.93267 1.08286 1.18028 0.88380 0.82256 0.76620 1.90804 1.22062 1.78793 1.49643 1.45951 1.10704 1.05619 1.75208 1.21377 0.88596 0.87156 1.02982 1.22001 1.00262 0.93183 1.02589 1.20505 0.93404 0.83723 0.99159 1.42681 1.04884 1.01372 1.91310 1.19081 0.91143 0.84295 1.42998 0.89123 1.24694 0.97162 0.95360 1.02065 1.69709 1.33036 0.97872 1.57549 0.86512 0.86915 0.77152 0.77708 1.21092 1.21731 1.20400 1.20764 0.90869 0.99697 0.97447 1.19554 1.00103 0.88215 1.05459 1.18810 0.90781 0.88978 1.04926 0.90407 0.89265 0.88949 0.73139 0.83395 0.76581 0.90923 0.90923 0.91316 0.91302 0.95096 0.95147 0.80714 0.93052 0.84502 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.10 59.85 0.66 0.84 16 2 N -0.49 -3.40 3.22 -123.30 -0.40 -3.80 16 3 C 0.45 3.78 8.98 -88.90 -0.80 2.98 16 4 O -0.44 -2.36 13.51 -17.52 -0.24 -2.60 16 5 N -0.48 -5.51 11.31 -12.25 -0.14 -5.64 16 6 C 0.05 0.52 7.21 -84.70 -0.61 -0.09 16 7 C 0.01 0.09 9.64 -38.81 -0.37 -0.29 16 8 C -0.14 -1.45 5.87 -105.00 -0.62 -2.07 16 9 C 0.56 7.07 7.76 -12.41 -0.10 6.97 16 10 O -0.54 -8.80 16.32 5.30 0.09 -8.71 16 11 N -0.72 -7.78 5.50 -61.31 -0.34 -8.12 16 12 C 0.12 1.54 5.67 -4.05 -0.02 1.52 16 13 C -0.14 -1.94 5.44 -26.73 -0.15 -2.09 16 14 C 0.16 2.99 6.26 -4.04 -0.03 2.96 16 15 N -0.76 -17.81 5.41 -59.91 -0.32 -18.14 16 16 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 17 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 18 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 19 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 20 Si 0.89 21.85 27.74 -169.99 -4.71 17.14 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 24 C -0.07 -0.50 9.47 -39.51 -0.37 -0.88 16 25 C -0.11 -0.77 9.96 -39.94 -0.40 -1.16 16 26 C 0.07 0.65 6.87 -83.85 -0.58 0.08 16 27 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 28 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.13 8.12 -51.93 -0.42 -0.29 16 30 H 0.41 -0.03 9.06 45.56 0.41 0.39 16 31 H 0.15 1.77 7.63 -52.48 -0.40 1.37 16 32 H 0.40 3.12 6.47 -40.82 -0.26 2.85 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.13 5.53 -40.82 -0.23 7.90 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 41 H 0.14 0.65 6.36 -52.48 -0.33 0.32 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -38.64 360.69 -8.11 -46.74 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.63 Total: 4.71 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.63 Total: 1.62 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.42 Total: -64.34 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.15 Total: -11.31 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.64 -8.11 -46.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177026369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.229 kcal (2) G-P(sol) polarization free energy of solvation -38.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds