Wall clock time and date at job start Fri Apr 10 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36441 * 126.31876 * 2 1 4 4 O 1.35275 * 125.02141 * 0.04542 * 3 2 1 5 5 N 1.30724 * 109.96420 * 179.77073 * 3 2 1 6 6 C 1.35982 * 109.53466 * 0.23697 * 5 3 2 7 7 C 1.39346 * 133.39883 * 179.97438 * 6 5 3 8 8 C 1.39204 * 119.51871 * 180.02562 * 7 6 5 9 9 C 1.47667 * 119.92023 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99498 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.46493 * 120.00023 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47286 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47243 * 180.02562 * 13 12 11 15 15 N 1.46502 * 109.46896 * 180.02562 * 14 13 12 16 16 C 1.36938 * 119.99730 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99868 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99943 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00117 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00076 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47060 * 89.99547 * 20 18 16 22 22 H 1.48496 * 109.47055 * 209.99522 * 20 18 16 23 23 H 1.48499 * 109.46967 * 330.00008 * 20 18 16 24 24 C 1.40075 * 120.16590 * 359.93018 * 8 7 6 25 25 C 1.36520 * 120.44045 * 0.04487 * 24 8 7 26 26 C 1.38124 * 126.32013 * 180.17287 * 2 1 3 27 27 H 1.09005 * 109.46875 * 90.02276 * 1 2 3 28 28 H 1.08997 * 109.47142 * 210.01965 * 1 2 3 29 29 H 1.09003 * 109.47011 * 330.02351 * 1 2 3 30 30 H 0.96700 * 113.99596 * 269.71588 * 4 3 2 31 31 H 1.08005 * 120.23901 * 0.02562 * 7 6 5 32 32 H 0.97004 * 119.99977 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47429 * 300.00776 * 12 11 9 34 34 H 1.09005 * 109.47298 * 60.00062 * 12 11 9 35 35 H 1.09001 * 109.47047 * 300.00038 * 13 12 11 36 36 H 1.08999 * 109.46706 * 60.00151 * 13 12 11 37 37 H 1.09001 * 109.46929 * 299.99864 * 14 13 12 38 38 H 1.08998 * 109.46876 * 60.00054 * 14 13 12 39 39 H 0.96994 * 120.00276 * 359.97438 * 15 14 13 40 40 H 0.97003 * 119.99722 * 180.02562 * 19 18 16 41 41 H 1.08004 * 119.78270 * 180.02562 * 24 8 7 42 42 H 1.07999 * 119.91846 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8403 2.3810 0.0009 5 7 3.5275 0.7313 0.0049 6 6 3.6029 -0.6265 0.0031 7 6 4.6670 -1.5262 0.0059 8 6 4.4085 -2.8941 0.0021 9 6 5.5294 -3.8554 0.0045 10 8 6.6762 -3.4519 0.0092 11 7 5.2811 -5.1801 0.0014 12 6 6.3931 -6.1338 0.0031 13 6 5.8412 -7.5608 -0.0017 14 6 7.0026 -8.5568 0.0008 15 7 6.4740 -9.9232 -0.0044 16 6 7.3331 -10.9896 -0.0028 17 1 8.4002 -10.8233 0.0019 18 6 6.8324 -12.2842 -0.0072 19 7 7.6581 -13.3092 -0.0062 20 14 4.9866 -12.5717 -0.0161 21 1 4.5039 -12.6455 -1.4186 22 1 4.6810 -13.8471 0.6803 23 1 4.3077 -11.4510 0.6827 24 6 3.0878 -3.3609 -0.0029 25 6 2.0435 -2.4816 -0.0051 26 6 2.2831 -1.1129 -0.0034 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3633 0.8902 0.5135 30 1 1.7181 2.7554 -0.8823 31 1 5.6848 -1.1649 0.0109 32 1 4.3660 -5.5021 -0.0027 33 1 7.0062 -5.9787 -0.8846 34 1 7.0007 -5.9819 0.8953 35 1 5.2279 -7.7161 0.8860 36 1 5.2339 -7.7124 -0.8940 37 1 7.6162 -8.4016 -0.8866 38 1 7.6095 -8.4050 0.8934 39 1 5.5157 -10.0725 -0.0083 40 1 7.3081 -14.2139 -0.0097 41 1 2.8944 -4.4234 -0.0053 42 1 1.0285 -2.8508 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177026369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:05 Heat of formation + Delta-G solvation = -12.378371 kcal Electronic energy + Delta-G solvation = -24672.935273 eV Core-core repulsion = 20846.512532 eV Total energy + Delta-G solvation = -3826.422741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.33471 -40.97916 -39.05229 -37.67670 -37.30128 -36.00845 -35.40772 -33.87987 -32.07442 -31.54109 -30.10797 -28.13505 -27.08125 -24.93448 -23.88252 -23.67013 -22.65901 -21.95781 -21.60701 -19.74150 -19.63199 -18.99514 -18.23590 -17.71636 -17.18588 -16.82523 -16.72443 -16.44894 -15.86851 -15.64211 -15.48651 -15.30540 -15.04872 -14.80779 -14.73750 -14.21832 -14.07447 -13.86246 -13.74665 -13.50672 -13.37876 -12.85890 -12.54695 -12.49947 -12.45832 -12.40265 -12.05260 -11.97208 -11.78645 -11.52663 -11.19887 -11.06270 -10.95240 -10.16786 -9.45972 -9.29197 -9.28059 -8.00913 -5.35965 -0.31367 -0.07946 1.16430 1.40434 1.46254 1.46456 1.53828 1.82266 2.03905 2.51745 2.62465 2.79803 3.27072 3.30217 3.57474 3.66124 3.78809 3.88578 4.10636 4.12893 4.18037 4.25010 4.28385 4.39164 4.42780 4.58068 4.69098 4.75444 4.75507 4.91194 4.96204 5.16927 5.22114 5.24719 5.29831 5.33053 5.40425 5.58218 5.65559 5.77068 6.22484 6.51937 6.52916 6.59612 7.09811 7.19047 7.84220 8.05818 9.20579 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.001902 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.452827 B =14720.642738 C =15643.438926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.487 5.487 3 C 0.455 3.545 4 O -0.441 6.441 5 N -0.529 5.529 6 C 0.019 3.981 7 C -0.018 4.018 8 C -0.145 4.145 9 C 0.559 3.441 10 O -0.585 6.585 11 N -0.706 5.706 12 C 0.130 3.870 13 C -0.122 4.122 14 C 0.152 3.848 15 N -0.757 5.757 16 C -0.242 4.242 17 H 0.051 0.949 18 C -0.069 4.069 19 N -0.986 5.986 20 Si 0.964 3.036 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.243 1.243 24 C -0.063 4.063 25 C -0.096 4.096 26 C 0.073 3.927 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.433 0.567 31 H 0.122 0.878 32 H 0.417 0.583 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.025 0.975 38 H 0.023 0.977 39 H 0.370 0.630 40 H 0.258 0.742 41 H 0.171 0.829 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.551 31.949 -1.822 40.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.189 5.189 3 C 0.151 3.849 4 O -0.246 6.246 5 N -0.261 5.261 6 C -0.098 4.098 7 C -0.038 4.038 8 C -0.151 4.151 9 C 0.347 3.653 10 O -0.466 6.466 11 N -0.359 5.359 12 C 0.005 3.995 13 C -0.160 4.160 14 C 0.026 3.974 15 N -0.403 5.403 16 C -0.373 4.373 17 H 0.069 0.931 18 C -0.261 4.261 19 N -0.636 5.636 20 Si 0.790 3.210 21 H -0.202 1.202 22 H -0.224 1.224 23 H -0.167 1.167 24 C -0.083 4.083 25 C -0.117 4.117 26 C -0.038 4.038 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.296 0.704 31 H 0.140 0.860 32 H 0.256 0.744 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.203 0.797 40 H 0.067 0.933 41 H 0.189 0.811 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -24.024 32.769 -1.226 40.651 hybrid contribution -1.112 -0.838 -0.458 1.466 sum -25.137 31.931 -1.683 40.673 Atomic orbital electron populations 1.22437 0.72706 1.06695 1.05557 1.45816 1.09168 1.03995 1.59892 1.20451 0.83708 0.82491 0.98254 1.84779 1.85979 1.17095 1.36773 1.70640 1.17775 1.12096 1.25560 1.18737 0.93343 0.89446 1.08307 1.20285 0.97817 0.90854 0.94863 1.19494 0.94098 0.92065 1.09416 1.18408 0.88308 0.82910 0.75626 1.90780 1.24193 1.79615 1.51990 1.45709 1.11219 1.04669 1.74271 1.21143 0.89016 0.87118 1.02188 1.21765 0.98276 0.91672 1.04264 1.20669 0.95502 0.82821 0.98445 1.42626 1.04736 1.01871 1.91100 1.19053 0.90325 0.86113 1.41855 0.93068 1.25659 1.03233 0.94866 1.02296 1.69918 1.35877 0.98387 1.59451 0.85276 0.79800 0.77630 0.78255 1.20159 1.22444 1.16703 1.21072 0.89243 1.01534 0.96497 1.19981 1.01812 0.86922 1.02962 1.19077 0.89994 0.90257 1.04489 0.88374 0.87571 0.87897 0.70396 0.85988 0.74390 0.91863 0.91950 0.89666 0.89497 0.95721 0.95847 0.79665 0.93313 0.81136 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.05 11.10 127.77 1.42 1.47 16 2 N -0.49 -5.48 3.22 -654.88 -2.11 -7.59 16 3 C 0.45 7.23 8.98 179.75 1.61 8.84 16 4 O -0.44 -4.06 13.51 -85.59 -1.16 -5.22 16 5 N -0.53 -12.65 11.31 -306.53 -3.47 -16.12 16 6 C 0.02 0.44 7.21 39.36 0.28 0.72 16 7 C -0.02 -0.43 9.64 22.77 0.22 -0.21 16 8 C -0.15 -2.94 5.87 -20.11 -0.12 -3.06 16 9 C 0.56 13.99 7.76 86.73 0.67 14.66 16 10 O -0.58 -20.18 16.32 -3.95 -0.06 -20.24 16 11 N -0.71 -13.69 5.50 -466.15 -2.57 -16.25 16 12 C 0.13 3.08 5.67 86.38 0.49 3.57 16 13 C -0.12 -2.96 5.44 30.60 0.17 -2.79 16 14 C 0.15 5.53 6.26 86.38 0.54 6.07 16 15 N -0.76 -34.44 5.41 -343.44 -1.86 -36.29 16 16 C -0.24 -13.95 10.47 84.03 0.88 -13.07 16 17 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 19 N -0.99 -63.53 13.97 21.65 0.30 -63.23 16 20 Si 0.96 44.08 27.74 68.60 1.90 45.98 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.24 -9.62 6.52 99.48 0.65 -8.97 16 24 C -0.06 -0.73 9.47 22.31 0.21 -0.52 16 25 C -0.10 -0.92 9.96 22.04 0.22 -0.70 16 26 C 0.07 1.12 6.87 38.92 0.27 1.38 16 27 H 0.10 -0.26 8.14 -2.38 -0.02 -0.28 16 28 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.10 -0.09 8.12 -2.39 -0.02 -0.11 16 30 H 0.43 -0.84 9.06 -74.06 -0.67 -1.51 16 31 H 0.12 3.42 7.63 -2.91 -0.02 3.39 16 32 H 0.42 4.84 6.47 -92.71 -0.60 4.24 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.37 15.36 5.53 -92.71 -0.51 14.85 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.17 0.72 6.36 -2.91 -0.02 0.70 16 42 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -89.19 360.69 -2.43 -91.62 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.75 Total: 14.60 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 7.33 Total: 12.75 kcal Atomic # 7 Polarization: -129.79 SS G_CDS: -9.70 Total: -139.49 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -1.22 Total: -25.46 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Total: -89.19 -2.43 -91.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177026369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.247 kcal (2) G-P(sol) polarization free energy of solvation -89.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds