Wall clock time and date at job start Fri Apr 10 2020 18:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37454 * 126.48239 * 2 1 4 4 C 1.34476 * 106.93629 * 180.02562 * 3 2 1 5 5 N 1.34273 * 108.30122 * 359.75721 * 4 3 2 6 6 C 1.31126 * 109.29456 * 0.40097 * 5 4 3 7 7 N 1.38921 * 125.78344 * 179.87039 * 6 5 4 8 8 C 1.34782 * 120.00053 * 359.68533 * 7 6 5 9 9 O 1.21285 * 119.99694 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00096 * 180.02562 * 8 7 6 11 11 C 1.53066 * 119.24195 * 226.35837 * 10 8 7 12 12 C 1.54004 * 121.22680 * 154.84835 * 10 8 7 13 13 H 1.08995 * 121.76114 * 0.36070 * 12 10 8 14 14 C 1.54580 * 105.00861 * 223.47781 * 12 10 8 15 15 C 1.53759 * 103.30806 * 20.59644 * 14 12 10 16 16 N 1.47526 * 117.37203 * 20.28716 * 10 8 7 17 17 C 1.34774 * 127.04942 * 295.07021 * 16 10 8 18 18 O 1.21280 * 119.99761 * 359.97438 * 17 16 10 19 19 C 1.50698 * 120.00338 * 179.97438 * 17 16 10 20 20 C 1.50694 * 109.47166 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00563 * 0.02562 * 20 19 17 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.09000 * 109.47560 * 269.98260 * 1 2 3 29 29 H 1.09002 * 109.47052 * 29.98707 * 1 2 3 30 30 H 1.09003 * 109.47120 * 149.98160 * 1 2 3 31 31 H 1.07992 * 126.53141 * 0.02952 * 3 2 1 32 32 H 1.08008 * 125.84862 * 179.97438 * 4 3 2 33 33 H 0.96997 * 120.00520 * 179.69101 * 7 6 5 34 34 H 1.09000 * 117.46024 * 355.63214 * 11 10 8 35 35 H 1.09009 * 117.45183 * 140.40734 * 11 10 8 36 36 H 1.08991 * 110.73385 * 140.30359 * 14 12 10 37 37 H 1.08999 * 110.73122 * 263.44125 * 14 12 10 38 38 H 1.09004 * 110.99124 * 205.03797 * 15 14 12 39 39 H 1.09003 * 109.75514 * 82.32450 * 15 14 12 40 40 H 1.09007 * 109.46871 * 59.99694 * 19 17 16 41 41 H 1.09003 * 109.46889 * 300.00448 * 19 17 16 42 42 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2823 1.1052 0.0000 4 6 3.5496 0.6553 -0.0006 5 7 3.5204 -0.6871 0.0045 6 6 2.2737 -1.0934 -0.0005 7 7 1.8506 -2.4166 -0.0001 8 6 2.7571 -3.4141 -0.0007 9 8 3.9422 -3.1563 -0.0011 10 6 2.2981 -4.8494 -0.0008 11 6 2.9487 -5.8426 0.9652 12 6 3.1901 -5.9728 -0.5612 13 1 4.1803 -5.7697 -0.9689 14 6 2.2394 -6.8593 -1.3977 15 6 1.0522 -5.9270 -1.6904 16 7 0.9209 -5.1211 -0.4546 17 6 -0.2225 -4.7226 0.1371 18 8 -0.1811 -4.0668 1.1565 19 6 -1.5525 -5.0917 -0.4679 20 6 -2.6637 -4.5292 0.3805 21 1 -2.4303 -3.9608 1.2687 22 6 -3.9785 -4.7401 0.0227 23 7 -4.2627 -5.4318 -1.0591 24 14 -5.3559 -4.0434 1.0747 25 1 -6.6665 -4.4071 0.4785 26 1 -5.2630 -4.6041 2.4466 27 1 -5.2333 -2.5648 1.1350 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.9668 2.1380 0.0004 32 1 4.4386 1.2687 -0.0011 33 1 0.9028 -2.6228 0.0005 34 1 3.7792 -5.4826 1.5724 35 1 2.2999 -6.5758 1.4446 36 1 2.7272 -7.1902 -2.3145 37 1 1.8960 -7.7139 -0.8148 38 1 0.1428 -6.4990 -1.8750 39 1 1.2862 -5.2890 -2.5427 40 1 -1.6430 -6.1771 -0.5116 41 1 -1.6200 -4.6806 -1.4752 42 1 -5.1877 -5.5805 -1.3106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269024392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:25 Heat of formation + Delta-G solvation = 50.156647 kcal Electronic energy + Delta-G solvation = -27438.289098 eV Core-core repulsion = 23614.578079 eV Total energy + Delta-G solvation = -3823.711019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.97524 -40.76457 -38.58012 -37.59510 -34.62560 -33.82750 -33.22714 -32.73160 -30.50192 -29.06659 -28.51528 -26.93527 -24.86336 -23.72061 -23.41930 -21.86337 -21.31140 -20.22375 -19.82029 -18.83120 -17.75082 -16.99042 -16.40473 -15.99666 -15.95700 -15.60201 -15.40464 -14.84128 -14.39978 -14.38324 -14.23707 -13.71470 -13.54954 -13.38167 -13.23255 -12.87588 -12.86023 -12.60891 -12.50923 -12.21223 -11.87416 -11.41864 -11.18271 -10.96350 -10.80487 -10.68825 -10.55964 -10.36910 -10.12895 -9.93903 -9.52741 -9.49495 -9.45349 -8.98970 -8.60277 -8.42435 -7.74328 -6.22431 -4.23754 1.90368 2.32190 2.61679 3.06648 3.23849 3.25201 3.28752 3.30708 3.33677 3.37429 3.70099 4.32477 4.38764 4.50042 4.62153 4.73841 4.89913 5.01361 5.12663 5.15900 5.16857 5.24289 5.37345 5.48090 5.55975 5.62264 5.65916 5.71886 5.78102 5.83384 5.90715 5.98966 6.19046 6.29644 6.48204 6.77991 6.96935 7.09178 7.23473 7.30256 7.75713 7.79455 8.12096 8.16677 8.40096 8.81097 8.87640 9.42182 10.89434 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.005264 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.876130 B = 5317.735689 C = 7478.846698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.475 5.475 3 C -0.066 4.066 4 C -0.018 4.018 5 N -0.475 5.475 6 C 0.438 3.562 7 N -0.628 5.628 8 C 0.563 3.437 9 O -0.482 6.482 10 C 0.044 3.956 11 C -0.116 4.116 12 C -0.121 4.121 13 H 0.132 0.868 14 C -0.109 4.109 15 C 0.105 3.895 16 N -0.607 5.607 17 C 0.529 3.471 18 O -0.535 6.535 19 C 0.013 3.987 20 C -0.515 4.515 21 H 0.075 0.925 22 C 0.059 3.941 23 N -0.897 5.897 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.275 1.275 27 H -0.276 1.276 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.423 0.577 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.944 3.509 -2.679 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.165 5.165 3 C -0.198 4.198 4 C -0.166 4.166 5 N -0.201 5.201 6 C 0.087 3.913 7 N -0.284 5.284 8 C 0.348 3.652 9 O -0.351 6.351 10 C -0.046 4.046 11 C -0.155 4.155 12 C -0.140 4.140 13 H 0.149 0.851 14 C -0.147 4.147 15 C -0.018 4.018 16 N -0.345 5.345 17 C 0.322 3.678 18 O -0.411 6.411 19 C -0.026 4.026 20 C -0.554 4.554 21 H 0.093 0.907 22 C -0.143 4.143 23 N -0.536 5.536 24 Si 0.729 3.271 25 H -0.213 1.213 26 H -0.200 1.200 27 H -0.202 1.202 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.194 0.806 32 H 0.189 0.811 33 H 0.264 0.736 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.036 3.472 -2.191 12.717 hybrid contribution -2.263 0.887 0.471 2.476 sum 9.773 4.359 -1.720 10.838 Atomic orbital electron populations 1.22106 0.76051 1.04915 1.04307 1.45389 1.07509 1.05541 1.58083 1.22484 0.90932 0.91659 1.14678 1.22244 0.96373 0.90820 1.07166 1.70816 1.14952 1.11251 1.23042 1.19596 0.85691 0.81777 1.04214 1.42732 1.12332 1.00360 1.72961 1.19447 0.85385 0.84708 0.75698 1.90807 1.15403 1.83052 1.45844 1.21485 0.84916 0.88713 1.09482 1.23784 1.01386 0.98657 0.91630 1.24111 0.98935 0.95512 0.95441 0.85057 1.22257 0.94514 0.97845 1.00044 1.22444 0.99372 0.93045 0.86920 1.49035 1.02577 1.56029 1.26866 1.22219 0.84900 0.77291 0.83355 1.90574 1.86711 1.39544 1.24257 1.19261 0.86244 0.99246 0.97810 1.21075 0.89452 1.34383 1.10457 0.90679 1.24986 0.98896 0.95124 0.95263 1.69934 1.19494 1.39845 1.24299 0.86489 0.80542 0.79493 0.80535 1.21250 1.20046 1.20154 0.90003 0.89100 0.89529 0.80593 0.81124 0.73580 0.86846 0.87331 0.89019 0.90124 0.88373 0.91220 0.93062 0.93262 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.00 59.85 0.66 1.50 16 2 N -0.48 -7.12 3.19 -124.84 -0.40 -7.52 16 3 C -0.07 -0.85 11.60 -16.36 -0.19 -1.04 16 4 C -0.02 -0.27 11.84 -17.81 -0.21 -0.48 16 5 N -0.48 -9.07 9.43 -13.83 -0.13 -9.20 16 6 C 0.44 8.05 8.43 -319.12 -2.69 5.37 16 7 N -0.63 -11.72 5.28 -12.53 -0.07 -11.78 16 8 C 0.56 10.47 7.61 -10.98 -0.08 10.39 16 9 O -0.48 -9.86 15.54 5.55 0.09 -9.78 16 10 C 0.04 0.71 2.43 -131.85 -0.32 0.39 16 11 C -0.12 -1.56 10.12 -25.60 -0.26 -1.82 16 12 C -0.12 -1.46 6.83 -88.17 -0.60 -2.06 16 13 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 14 C -0.11 -1.11 6.84 -25.51 -0.17 -1.28 16 15 C 0.10 1.35 6.89 -2.76 -0.02 1.33 16 16 N -0.61 -10.08 3.03 -157.01 -0.48 -10.56 16 17 C 0.53 10.88 6.76 -10.99 -0.07 10.80 16 18 O -0.54 -12.37 14.17 5.56 0.08 -12.30 16 19 C 0.01 0.31 4.40 -29.04 -0.13 0.18 16 20 C -0.52 -13.60 8.92 -34.44 -0.31 -13.90 16 21 H 0.08 2.06 6.75 -52.49 -0.35 1.70 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 23 N -0.90 -24.46 13.29 55.43 0.74 -23.72 16 24 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.15 7.52 -51.93 -0.39 0.76 16 31 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.17 1.95 8.06 -52.48 -0.42 1.52 16 33 H 0.42 7.96 4.66 -40.82 -0.19 7.77 16 34 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.11 1.42 8.14 -51.92 -0.42 1.00 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.25 7.24 -51.93 -0.38 0.88 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.20 7.90 -51.92 -0.41 0.79 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -34.11 355.71 -9.83 -43.94 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.51 Total: 9.07 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: -4.50 Total: 10.82 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.34 Total: -62.78 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.17 Total: -22.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.11 -9.83 -43.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.100 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds