Wall clock time and date at job start Fri Apr 10 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37454 * 126.48239 * 2 1 4 4 C 1.34476 * 106.93629 * 180.02562 * 3 2 1 5 5 N 1.34273 * 108.30122 * 359.75721 * 4 3 2 6 6 C 1.31126 * 109.29456 * 0.40097 * 5 4 3 7 7 N 1.38921 * 125.78344 * 179.87039 * 6 5 4 8 8 C 1.34782 * 120.00053 * 359.68533 * 7 6 5 9 9 O 1.21285 * 119.99694 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00096 * 180.02562 * 8 7 6 11 11 C 1.53066 * 119.24195 * 226.35837 * 10 8 7 12 12 C 1.54004 * 121.22680 * 154.84835 * 10 8 7 13 13 H 1.08995 * 121.76114 * 0.36070 * 12 10 8 14 14 C 1.54580 * 105.00861 * 223.47781 * 12 10 8 15 15 C 1.53759 * 103.30806 * 20.59644 * 14 12 10 16 16 N 1.47526 * 117.37203 * 20.28716 * 10 8 7 17 17 C 1.34774 * 127.04942 * 295.07021 * 16 10 8 18 18 O 1.21280 * 119.99761 * 359.97438 * 17 16 10 19 19 C 1.50698 * 120.00338 * 179.97438 * 17 16 10 20 20 C 1.50694 * 109.47166 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00563 * 0.02562 * 20 19 17 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.09000 * 109.47560 * 269.98260 * 1 2 3 29 29 H 1.09002 * 109.47052 * 29.98707 * 1 2 3 30 30 H 1.09003 * 109.47120 * 149.98160 * 1 2 3 31 31 H 1.07992 * 126.53141 * 0.02952 * 3 2 1 32 32 H 1.08008 * 125.84862 * 179.97438 * 4 3 2 33 33 H 0.96997 * 120.00520 * 179.69101 * 7 6 5 34 34 H 1.09000 * 117.46024 * 355.63214 * 11 10 8 35 35 H 1.09009 * 117.45183 * 140.40734 * 11 10 8 36 36 H 1.08991 * 110.73385 * 140.30359 * 14 12 10 37 37 H 1.08999 * 110.73122 * 263.44125 * 14 12 10 38 38 H 1.09004 * 110.99124 * 205.03797 * 15 14 12 39 39 H 1.09003 * 109.75514 * 82.32450 * 15 14 12 40 40 H 1.09007 * 109.46871 * 59.99694 * 19 17 16 41 41 H 1.09003 * 109.46889 * 300.00448 * 19 17 16 42 42 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2823 1.1052 0.0000 4 6 3.5496 0.6553 -0.0006 5 7 3.5204 -0.6871 0.0045 6 6 2.2737 -1.0934 -0.0005 7 7 1.8506 -2.4166 -0.0001 8 6 2.7571 -3.4141 -0.0007 9 8 3.9422 -3.1563 -0.0011 10 6 2.2981 -4.8494 -0.0008 11 6 2.9487 -5.8426 0.9652 12 6 3.1901 -5.9728 -0.5612 13 1 4.1803 -5.7697 -0.9689 14 6 2.2394 -6.8593 -1.3977 15 6 1.0522 -5.9270 -1.6904 16 7 0.9209 -5.1211 -0.4546 17 6 -0.2225 -4.7226 0.1371 18 8 -0.1811 -4.0668 1.1565 19 6 -1.5525 -5.0917 -0.4679 20 6 -2.6637 -4.5292 0.3805 21 1 -2.4303 -3.9608 1.2687 22 6 -3.9785 -4.7401 0.0227 23 7 -4.2627 -5.4318 -1.0591 24 14 -5.3559 -4.0434 1.0747 25 1 -6.6665 -4.4071 0.4785 26 1 -5.2630 -4.6041 2.4466 27 1 -5.2333 -2.5648 1.1350 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.9668 2.1380 0.0004 32 1 4.4386 1.2687 -0.0011 33 1 0.9028 -2.6228 0.0005 34 1 3.7792 -5.4826 1.5724 35 1 2.2999 -6.5758 1.4446 36 1 2.7272 -7.1902 -2.3145 37 1 1.8960 -7.7139 -0.8148 38 1 0.1428 -6.4990 -1.8750 39 1 1.2862 -5.2890 -2.5427 40 1 -1.6430 -6.1771 -0.5116 41 1 -1.6200 -4.6806 -1.4752 42 1 -5.1877 -5.5805 -1.3106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269024392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:24 Heat of formation + Delta-G solvation = 30.157613 kcal Electronic energy + Delta-G solvation = -27439.156321 eV Core-core repulsion = 23614.578079 eV Total energy + Delta-G solvation = -3824.578242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.16914 -42.02269 -40.04282 -38.99729 -35.98118 -35.14406 -34.98692 -34.11623 -31.61329 -30.87456 -29.72357 -28.01507 -26.40975 -25.25466 -24.59662 -23.12719 -22.47654 -21.34353 -21.15883 -20.14462 -19.01658 -18.60431 -18.11601 -17.29723 -17.22415 -17.00438 -16.70365 -16.35192 -15.88978 -15.76814 -15.68194 -14.96419 -14.78973 -14.45298 -14.33189 -14.18251 -14.08903 -13.97808 -13.62546 -13.59492 -13.26888 -12.96392 -12.76835 -12.60518 -12.22734 -12.04354 -11.90629 -11.81092 -11.60125 -11.41243 -11.12253 -10.76620 -10.69358 -10.63223 -10.61861 -9.76553 -8.93304 -8.25481 -6.32624 0.66481 1.13559 1.41219 1.41633 1.43010 1.50885 1.65422 1.77023 2.13065 2.17267 2.41408 2.50636 3.10747 3.20164 3.41850 3.51469 3.74246 3.83115 3.90857 4.13777 4.20491 4.24496 4.30796 4.35591 4.51853 4.54104 4.57287 4.66485 4.72764 4.79745 4.85598 4.98992 5.05806 5.15255 5.21649 5.23241 5.34194 5.65981 5.72975 5.98307 6.01020 6.09062 6.47368 6.79892 6.83414 7.14622 7.23735 7.37794 8.85959 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.005264 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.876130 B = 5317.735689 C = 7478.846698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.474 5.474 3 C -0.039 4.039 4 C -0.046 4.046 5 N -0.513 5.513 6 C 0.395 3.605 7 N -0.633 5.633 8 C 0.556 3.444 9 O -0.511 6.511 10 C 0.010 3.990 11 C -0.114 4.114 12 C -0.085 4.085 13 H 0.146 0.854 14 C -0.097 4.097 15 C 0.094 3.906 16 N -0.599 5.599 17 C 0.533 3.467 18 O -0.569 6.569 19 C 0.022 3.978 20 C -0.534 4.534 21 H 0.059 0.941 22 C 0.017 3.983 23 N -0.921 5.921 24 Si 0.958 3.042 25 H -0.278 1.278 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.226 0.774 32 H 0.198 0.802 33 H 0.418 0.582 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.149 3.942 -3.297 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.164 5.164 3 C -0.171 4.171 4 C -0.193 4.193 5 N -0.239 5.239 6 C 0.045 3.955 7 N -0.287 5.287 8 C 0.342 3.658 9 O -0.383 6.383 10 C -0.080 4.080 11 C -0.152 4.152 12 C -0.105 4.105 13 H 0.164 0.836 14 C -0.134 4.134 15 C -0.027 4.027 16 N -0.335 5.335 17 C 0.326 3.674 18 O -0.448 6.448 19 C -0.017 4.017 20 C -0.572 4.572 21 H 0.077 0.923 22 C -0.182 4.182 23 N -0.560 5.560 24 Si 0.783 3.217 25 H -0.203 1.203 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.101 0.899 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.215 0.785 33 H 0.259 0.741 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.252 3.890 -2.843 13.165 hybrid contribution -2.278 0.833 0.636 2.507 sum 9.975 4.723 -2.206 11.255 Atomic orbital electron populations 1.22284 0.74653 1.05942 1.04708 1.45651 1.08452 1.05254 1.57027 1.23299 0.89960 0.92898 1.10899 1.22830 0.98512 0.89695 1.08249 1.70700 1.16002 1.13710 1.23537 1.19777 0.86475 0.82347 1.06945 1.42777 1.12012 1.01017 1.72893 1.19936 0.85155 0.85658 0.75051 1.90767 1.16256 1.83654 1.47614 1.21688 0.84820 0.88284 1.13209 1.23875 1.01051 0.97469 0.92825 1.24367 0.98983 0.92631 0.94471 0.83590 1.22327 0.92798 0.96828 1.01477 1.22768 1.00819 0.93443 0.85670 1.48805 1.02069 1.55123 1.27484 1.21589 0.85423 0.77370 0.83035 1.90548 1.87366 1.41137 1.25726 1.19022 0.87233 0.98418 0.97068 1.21280 0.90925 1.34569 1.10471 0.92324 1.25675 1.00868 0.95352 0.96316 1.70008 1.20061 1.40586 1.25345 0.85609 0.78118 0.79124 0.78847 1.20328 1.20177 1.19431 0.89914 0.85212 0.91336 0.75754 0.78494 0.74103 0.86584 0.86925 0.85228 0.89173 0.88374 0.90087 0.93765 0.93823 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 11.00 127.77 1.41 2.96 16 2 N -0.47 -13.91 3.19 -548.89 -1.75 -15.66 16 3 C -0.04 -0.92 11.60 82.95 0.96 0.04 16 4 C -0.05 -1.32 11.84 83.46 0.99 -0.33 16 5 N -0.51 -19.91 9.43 -197.68 -1.86 -21.78 16 6 C 0.40 14.87 8.43 260.20 2.19 17.06 16 7 N -0.63 -24.59 5.28 -311.95 -1.65 -26.24 16 8 C 0.56 21.27 7.61 87.66 0.67 21.94 16 9 O -0.51 -21.51 15.54 -3.04 -0.05 -21.56 16 10 C 0.01 0.32 2.43 3.02 0.01 0.33 16 11 C -0.11 -2.97 10.12 31.33 0.32 -2.66 16 12 C -0.09 -1.88 6.83 -9.20 -0.06 -1.94 16 13 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 14 C -0.10 -1.67 6.84 31.39 0.21 -1.46 16 15 C 0.09 2.29 6.89 86.32 0.59 2.88 16 16 N -0.60 -19.95 3.03 -769.04 -2.33 -22.29 16 17 C 0.53 22.57 6.76 87.66 0.59 23.17 16 18 O -0.57 -27.38 14.17 -3.03 -0.04 -27.42 16 19 C 0.02 1.03 4.40 29.10 0.13 1.15 16 20 C -0.53 -28.84 8.92 25.60 0.23 -28.61 16 21 H 0.06 3.31 6.75 -2.91 -0.02 3.29 16 22 C 0.02 0.92 5.46 84.66 0.46 1.38 16 23 N -0.92 -50.39 13.29 21.45 0.28 -50.11 16 24 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 1.87 7.52 -2.39 -0.02 1.86 16 31 H 0.23 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.42 16.60 4.66 -92.71 -0.43 16.16 16 34 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 36 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 2.41 7.24 -2.38 -0.02 2.40 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 2.12 7.90 -2.38 -0.02 2.11 16 41 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -77.04 355.71 3.94 -73.10 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.62 Total: 31.64 kcal Atomic # 6 Polarization: 27.22 SS G_CDS: 8.70 Total: 35.92 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -7.31 Total: -136.07 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.09 Total: -48.98 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -77.04 3.94 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269024392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.256 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds