Wall clock time and date at job start Fri Apr 10 2020 18:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46903 * 110.99764 * 2 1 4 4 C 1.46894 * 111.00054 * 123.95342 * 2 1 3 5 5 C 1.53002 * 109.47093 * 169.99840 * 4 2 1 6 6 N 1.46493 * 109.47200 * 179.97438 * 5 4 2 7 7 C 1.34280 * 125.75328 * 124.99860 * 6 5 4 8 8 C 1.38051 * 107.41448 * 180.02562 * 7 6 5 9 9 C 1.47418 * 126.41334 * 179.97438 * 8 7 6 10 10 O 1.21633 * 120.00021 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00055 * 180.27730 * 9 8 7 12 12 C 1.40568 * 120.00178 * 179.72567 * 11 9 8 13 13 C 1.40659 * 126.08240 * 359.69552 * 12 11 9 14 14 N 1.30904 * 108.38847 * 179.81794 * 13 12 11 15 15 N 1.40074 * 108.40723 * 0.43698 * 14 13 12 16 16 C 1.37319 * 126.06675 * 179.72033 * 15 14 13 17 17 H 1.08004 * 120.00106 * 180.02562 * 16 15 14 18 18 C 1.38983 * 120.00478 * 0.02562 * 16 15 14 19 19 N 1.31295 * 119.99901 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00339 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46935 * 60.00513 * 20 18 16 22 22 H 1.48502 * 109.47377 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47296 * 300.00380 * 20 18 16 24 24 C 1.35688 * 126.08260 * 180.02562 * 12 11 9 25 25 C 1.41293 * 107.16866 * 0.24711 * 8 7 6 26 26 N 1.30449 * 108.02758 * 359.58886 * 25 8 7 27 27 H 1.09003 * 109.46690 * 296.04388 * 1 2 3 28 28 H 1.08995 * 109.47057 * 56.04913 * 1 2 3 29 29 H 1.09001 * 109.47062 * 176.04777 * 1 2 3 30 30 H 1.09000 * 109.46816 * 183.95379 * 3 2 1 31 31 H 1.08998 * 109.47018 * 303.95272 * 3 2 1 32 32 H 1.08999 * 109.46960 * 63.95514 * 3 2 1 33 33 H 1.09003 * 109.46938 * 50.00318 * 4 2 1 34 34 H 1.08998 * 109.47594 * 290.00123 * 4 2 1 35 35 H 1.09003 * 109.46838 * 60.00417 * 5 4 2 36 36 H 1.08998 * 109.47131 * 300.00566 * 5 4 2 37 37 H 1.08000 * 126.29312 * 0.02562 * 7 6 5 38 38 H 0.97000 * 120.00112 * 359.73111 * 11 9 8 39 39 H 1.07999 * 125.80246 * 359.97438 * 13 12 11 40 40 H 0.96998 * 120.00714 * 179.97438 * 19 18 16 41 41 H 1.07996 * 126.24767 * 359.97438 * 24 12 11 42 42 H 1.08002 * 125.97994 * 179.73085 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5045 -0.9553 0.9703 6 7 4.0297 -1.7186 2.1050 7 6 4.7408 -2.8548 2.0245 8 6 5.0387 -3.2480 3.3139 9 6 5.8052 -4.4436 3.7091 10 8 6.2435 -5.1939 2.8580 11 7 6.0161 -4.7080 5.0137 12 6 6.7421 -5.8511 5.3908 13 6 7.2984 -6.8042 4.5187 14 7 7.9009 -7.7184 5.2361 15 7 7.7453 -7.3923 6.5895 16 6 8.2304 -8.1100 7.6549 17 1 8.0516 -7.7670 8.6633 18 6 8.9514 -9.2778 7.4358 19 7 9.1692 -9.6946 6.2100 20 14 9.6118 -10.2537 8.8852 21 1 8.4822 -10.6860 9.7468 22 1 10.3403 -11.4481 8.3871 23 1 10.5385 -9.4026 9.6740 24 6 7.0256 -6.2347 6.6611 25 6 4.4658 -2.2934 4.1839 26 7 3.8742 -1.3872 3.4556 27 1 -0.3633 0.4512 0.9234 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5090 -1.7406 1.1755 34 1 1.7976 -0.2248 2.0628 35 1 3.9910 0.0194 0.9323 36 1 3.7024 -1.4965 0.0450 37 1 5.0271 -3.3669 1.1178 38 1 5.6669 -4.1095 5.6925 39 1 7.2406 -6.7836 3.4404 40 1 9.6727 -10.5094 6.0569 41 1 6.7353 -5.7181 7.5640 42 1 4.5120 -2.3099 5.2628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865056265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:11 Heat of formation + Delta-G solvation = 140.916304 kcal Electronic energy + Delta-G solvation = -24961.966771 eV Core-core repulsion = 21174.484137 eV Total energy + Delta-G solvation = -3787.482634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42053 -39.67733 -38.32083 -37.95224 -34.14699 -33.81938 -33.01287 -30.51951 -30.16022 -29.36386 -28.11042 -27.54665 -25.24370 -24.64185 -22.76548 -22.03565 -20.84326 -20.71478 -19.87244 -19.22897 -17.91578 -17.17135 -16.37607 -16.18916 -15.62204 -15.38351 -15.18103 -15.06123 -14.91219 -14.36283 -14.12725 -14.06610 -13.70409 -13.27392 -13.02137 -12.92751 -12.88358 -12.71456 -12.46047 -12.24447 -12.08715 -11.64451 -11.61418 -11.37021 -11.20254 -11.03641 -10.85563 -10.52065 -10.06692 -9.69411 -9.12690 -9.09352 -8.96060 -8.73226 -8.69794 -7.98175 -6.59834 -6.49805 -4.16067 1.54944 2.11087 2.20565 3.00825 3.08353 3.12230 3.44428 3.51217 3.73896 3.94162 3.95740 4.23817 4.32634 4.57187 4.60364 4.70477 4.75329 4.81518 4.89387 4.91555 5.01017 5.05155 5.08052 5.21536 5.30498 5.35574 5.39759 5.42425 5.48428 5.79318 6.29309 6.32651 6.37772 6.40034 6.57530 6.72685 6.98357 7.05371 7.22241 7.32860 7.45398 7.92653 8.29746 8.38683 8.71925 9.00333 9.45048 9.74679 10.46276 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.052097 B = 0.001913 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.326739 B =14630.630595 C =14856.359302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.017 3.983 4 C 0.043 3.957 5 C 0.136 3.864 6 N -0.365 5.365 7 C 0.125 3.875 8 C -0.276 4.276 9 C 0.578 3.422 10 O -0.546 6.546 11 N -0.620 5.620 12 C -0.055 4.055 13 C -0.033 4.033 14 N -0.261 5.261 15 N -0.144 5.144 16 C -0.324 4.324 17 H 0.115 0.885 18 C 0.046 3.954 19 N -0.771 5.771 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.084 4.084 25 C 0.079 3.921 26 N -0.302 5.302 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.188 0.812 38 H 0.395 0.605 39 H 0.177 0.823 40 H 0.275 0.725 41 H 0.145 0.855 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.846 19.232 -8.343 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.131 4.131 4 C -0.086 4.086 5 C 0.014 3.986 6 N -0.145 5.145 7 C -0.026 4.026 8 C -0.291 4.291 9 C 0.365 3.635 10 O -0.424 6.424 11 N -0.261 5.261 12 C -0.161 4.161 13 C -0.209 4.209 14 N -0.092 5.092 15 N 0.088 4.912 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.398 5.398 20 Si 0.758 3.242 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.235 4.235 25 C -0.108 4.108 26 N -0.122 5.122 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.205 0.795 38 H 0.228 0.772 39 H 0.193 0.807 40 H 0.085 0.915 41 H 0.163 0.837 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.319 18.365 -9.646 24.652 hybrid contribution -0.232 0.413 1.839 1.898 sum -13.551 18.778 -7.808 24.438 Atomic orbital electron populations 1.22389 0.86394 1.02682 1.00818 1.61919 1.08628 1.14159 1.42340 1.22514 1.01038 0.88612 1.00983 1.22343 0.93900 0.99675 0.92689 1.21733 0.94411 0.97076 0.85380 1.48398 1.41170 1.19201 1.05771 1.22970 0.92574 0.87266 0.99753 1.20361 1.13851 1.02160 0.92710 1.17035 0.80179 0.83994 0.82301 1.90664 1.52125 1.49321 1.50327 1.42256 1.53075 1.24353 1.06437 1.17255 1.11922 0.94159 0.92732 1.24127 1.02592 0.94004 1.00149 1.78243 1.23928 1.21656 0.85384 1.44522 1.28936 1.12561 1.05180 1.19801 1.34643 1.05828 0.85306 0.86734 1.25625 0.96339 0.97212 0.97913 1.70208 1.30105 1.19880 1.19597 0.85911 0.79278 0.78949 0.80077 1.19210 1.20182 1.19213 1.21251 1.10473 0.95562 0.96232 1.24087 0.95052 0.91491 1.00210 1.77083 1.24857 1.23970 0.86278 0.95332 0.90952 0.91064 0.91043 0.90994 0.95172 0.89958 0.92861 0.89442 0.87376 0.79465 0.77204 0.80666 0.91480 0.83734 0.79409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.57 60.07 0.57 0.71 16 2 N -0.55 -3.59 5.02 -251.25 -1.26 -4.85 16 3 C 0.02 0.09 9.32 60.07 0.56 0.65 16 4 C 0.04 0.32 5.13 -3.83 -0.02 0.30 16 5 C 0.14 1.00 6.41 -4.04 -0.03 0.97 16 6 N -0.37 -3.88 3.65 -60.80 -0.22 -4.10 16 7 C 0.12 1.49 11.25 -16.55 -0.19 1.31 16 8 C -0.28 -3.90 6.13 -105.07 -0.64 -4.54 16 9 C 0.58 10.61 7.78 -12.52 -0.10 10.51 16 10 O -0.55 -12.00 14.05 5.25 0.07 -11.92 16 11 N -0.62 -11.36 5.46 -10.96 -0.06 -11.42 16 12 C -0.06 -1.29 6.90 -83.85 -0.58 -1.87 16 13 C -0.03 -0.89 10.85 -17.03 -0.18 -1.07 16 14 N -0.26 -7.71 10.40 30.80 0.32 -7.39 16 15 N -0.14 -4.01 3.74 -11.41 -0.04 -4.06 16 16 C -0.32 -8.67 10.25 -14.82 -0.15 -8.82 16 17 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 18 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 19 N -0.77 -21.83 11.81 55.49 0.66 -21.17 16 20 Si 0.93 19.14 29.55 -169.99 -5.02 14.11 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 25 C 0.08 0.95 11.50 -16.98 -0.20 0.75 16 26 N -0.30 -3.66 12.33 30.86 0.38 -3.27 16 27 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 29 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.07 0.34 6.47 -51.93 -0.34 0.01 16 31 H 0.07 0.32 8.12 -51.93 -0.42 -0.11 16 32 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 34 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.09 0.58 6.55 -51.93 -0.34 0.24 16 36 H 0.11 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.19 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.39 5.57 7.78 -40.82 -0.32 5.25 16 39 H 0.18 4.67 5.91 -52.49 -0.31 4.36 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 42 H 0.19 1.65 7.50 -52.49 -0.39 1.26 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -35.60 360.77 -6.43 -42.03 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.46 Total: 8.81 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.23 Total: -2.20 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.23 Total: -56.27 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.60 -6.43 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.948 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds