Wall clock time and date at job start Fri Apr 10 2020 18:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46903 * 110.99764 * 2 1 4 4 C 1.46894 * 111.00054 * 123.95342 * 2 1 3 5 5 C 1.53002 * 109.47093 * 169.99840 * 4 2 1 6 6 N 1.46493 * 109.47200 * 179.97438 * 5 4 2 7 7 C 1.34280 * 125.75328 * 124.99860 * 6 5 4 8 8 C 1.38051 * 107.41448 * 180.02562 * 7 6 5 9 9 C 1.47418 * 126.41334 * 179.97438 * 8 7 6 10 10 O 1.21633 * 120.00021 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00055 * 180.27730 * 9 8 7 12 12 C 1.40568 * 120.00178 * 179.72567 * 11 9 8 13 13 C 1.40659 * 126.08240 * 359.69552 * 12 11 9 14 14 N 1.30904 * 108.38847 * 179.81794 * 13 12 11 15 15 N 1.40074 * 108.40723 * 0.43698 * 14 13 12 16 16 C 1.37319 * 126.06675 * 179.72033 * 15 14 13 17 17 H 1.08004 * 120.00106 * 180.02562 * 16 15 14 18 18 C 1.38983 * 120.00478 * 0.02562 * 16 15 14 19 19 N 1.31295 * 119.99901 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00339 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46935 * 60.00513 * 20 18 16 22 22 H 1.48502 * 109.47377 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47296 * 300.00380 * 20 18 16 24 24 C 1.35688 * 126.08260 * 180.02562 * 12 11 9 25 25 C 1.41293 * 107.16866 * 0.24711 * 8 7 6 26 26 N 1.30449 * 108.02758 * 359.58886 * 25 8 7 27 27 H 1.09003 * 109.46690 * 296.04388 * 1 2 3 28 28 H 1.08995 * 109.47057 * 56.04913 * 1 2 3 29 29 H 1.09001 * 109.47062 * 176.04777 * 1 2 3 30 30 H 1.09000 * 109.46816 * 183.95379 * 3 2 1 31 31 H 1.08998 * 109.47018 * 303.95272 * 3 2 1 32 32 H 1.08999 * 109.46960 * 63.95514 * 3 2 1 33 33 H 1.09003 * 109.46938 * 50.00318 * 4 2 1 34 34 H 1.08998 * 109.47594 * 290.00123 * 4 2 1 35 35 H 1.09003 * 109.46838 * 60.00417 * 5 4 2 36 36 H 1.08998 * 109.47131 * 300.00566 * 5 4 2 37 37 H 1.08000 * 126.29312 * 0.02562 * 7 6 5 38 38 H 0.97000 * 120.00112 * 359.73111 * 11 9 8 39 39 H 1.07999 * 125.80246 * 359.97438 * 13 12 11 40 40 H 0.96998 * 120.00714 * 179.97438 * 19 18 16 41 41 H 1.07996 * 126.24767 * 359.97438 * 24 12 11 42 42 H 1.08002 * 125.97994 * 179.73085 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5045 -0.9553 0.9703 6 7 4.0297 -1.7186 2.1050 7 6 4.7408 -2.8548 2.0245 8 6 5.0387 -3.2480 3.3139 9 6 5.8052 -4.4436 3.7091 10 8 6.2435 -5.1939 2.8580 11 7 6.0161 -4.7080 5.0137 12 6 6.7421 -5.8511 5.3908 13 6 7.2984 -6.8042 4.5187 14 7 7.9009 -7.7184 5.2361 15 7 7.7453 -7.3923 6.5895 16 6 8.2304 -8.1100 7.6549 17 1 8.0516 -7.7670 8.6633 18 6 8.9514 -9.2778 7.4358 19 7 9.1692 -9.6946 6.2100 20 14 9.6118 -10.2537 8.8852 21 1 8.4822 -10.6860 9.7468 22 1 10.3403 -11.4481 8.3871 23 1 10.5385 -9.4026 9.6740 24 6 7.0256 -6.2347 6.6611 25 6 4.4658 -2.2934 4.1839 26 7 3.8742 -1.3872 3.4556 27 1 -0.3633 0.4512 0.9234 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5090 -1.7406 1.1755 34 1 1.7976 -0.2248 2.0628 35 1 3.9910 0.0194 0.9323 36 1 3.7024 -1.4965 0.0450 37 1 5.0271 -3.3669 1.1178 38 1 5.6669 -4.1095 5.6925 39 1 7.2406 -6.7836 3.4404 40 1 9.6727 -10.5094 6.0569 41 1 6.7353 -5.7181 7.5640 42 1 4.5120 -2.3099 5.2628 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865056265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:09 Heat of formation + Delta-G solvation = 114.233211 kcal Electronic energy + Delta-G solvation = -24963.123836 eV Core-core repulsion = 21174.484137 eV Total energy + Delta-G solvation = -3788.639700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.40079 -41.52259 -39.78312 -38.62690 -35.85635 -35.00316 -34.46959 -32.23050 -31.43381 -30.38152 -29.20944 -28.53079 -26.84229 -25.63346 -24.02509 -22.77372 -22.66101 -21.59516 -21.31232 -20.88002 -19.30233 -18.69809 -17.42850 -17.17809 -16.99836 -16.68256 -16.30493 -16.02954 -15.87033 -15.73613 -15.42362 -15.09656 -14.84563 -14.81715 -14.61989 -14.28563 -13.76887 -13.44166 -13.38595 -13.24514 -13.00211 -12.84419 -12.83529 -12.69823 -12.58727 -12.27200 -12.11709 -11.90588 -11.77216 -10.95122 -10.78832 -10.63784 -10.57181 -10.05233 -9.73738 -9.46316 -8.43882 -8.42765 -6.19276 0.52603 1.13121 1.30321 1.37608 1.42117 1.58351 1.80544 2.12010 2.25384 2.43212 2.81160 2.91805 3.00086 3.13550 3.51757 3.75198 3.84003 3.94538 4.16430 4.22388 4.26475 4.37330 4.45269 4.49091 4.58336 4.65293 4.67050 4.73565 4.77989 4.83031 4.98958 5.02616 5.04977 5.18089 5.34248 5.43287 5.55815 5.76976 5.90830 5.98186 6.00637 6.38004 6.51666 6.78787 6.87611 7.48599 7.53667 7.74293 8.56628 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.052097 B = 0.001913 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.326739 B =14630.630595 C =14856.359302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.552 5.552 3 C 0.015 3.985 4 C 0.051 3.949 5 C 0.131 3.869 6 N -0.356 5.356 7 C 0.136 3.864 8 C -0.303 4.303 9 C 0.580 3.420 10 O -0.588 6.588 11 N -0.612 5.612 12 C -0.040 4.040 13 C -0.060 4.060 14 N -0.311 5.311 15 N -0.170 5.170 16 C -0.355 4.355 17 H 0.141 0.859 18 C -0.008 4.008 19 N -0.826 5.826 20 Si 1.019 2.981 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.254 1.254 24 C -0.080 4.080 25 C 0.088 3.912 26 N -0.315 5.315 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.204 0.796 38 H 0.418 0.582 39 H 0.168 0.832 40 H 0.276 0.724 41 H 0.189 0.811 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 21.183 -7.214 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.133 4.133 4 C -0.078 4.078 5 C 0.011 3.989 6 N -0.135 5.135 7 C -0.016 4.016 8 C -0.318 4.318 9 C 0.369 3.631 10 O -0.469 6.469 11 N -0.256 5.256 12 C -0.147 4.147 13 C -0.235 4.235 14 N -0.143 5.143 15 N 0.061 4.939 16 C -0.486 4.486 17 H 0.158 0.842 18 C -0.219 4.219 19 N -0.454 5.454 20 Si 0.838 3.162 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.178 1.178 24 C -0.231 4.231 25 C -0.099 4.099 26 N -0.134 5.134 27 H 0.044 0.956 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.221 0.779 38 H 0.255 0.745 39 H 0.185 0.815 40 H 0.085 0.915 41 H 0.206 0.794 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.408 20.407 -8.511 26.391 hybrid contribution -0.048 0.005 1.332 1.333 sum -14.456 20.412 -7.179 26.022 Atomic orbital electron populations 1.22436 0.85862 1.02894 1.01231 1.61956 1.09212 1.14816 1.41620 1.22572 1.01480 0.87962 1.01247 1.22194 0.93826 0.99242 0.92501 1.22029 0.94364 0.97628 0.84920 1.48641 1.40081 1.18663 1.06113 1.23243 0.91435 0.87217 0.99741 1.20029 1.15733 1.01738 0.94287 1.17633 0.79317 0.84489 0.81630 1.90643 1.53810 1.51062 1.51401 1.42161 1.52730 1.23309 1.07425 1.17327 1.10689 0.94650 0.91995 1.24183 1.03877 0.95274 1.00188 1.78137 1.25697 1.23465 0.86987 1.44819 1.30304 1.14035 1.04724 1.20572 1.35250 1.06584 0.86182 0.84181 1.26879 0.95946 0.98023 1.01044 1.70399 1.31700 1.20728 1.22602 0.84653 0.78821 0.76863 0.75853 1.17744 1.20371 1.17753 1.21994 1.08778 0.94412 0.97875 1.24482 0.93766 0.90250 1.01425 1.77090 1.25166 1.24237 0.86952 0.95553 0.89782 0.91126 0.90412 0.89953 0.95581 0.90759 0.94248 0.88198 0.85444 0.77903 0.74523 0.81500 0.91470 0.79411 0.76685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.45 16 2 N -0.55 -6.25 5.02 -948.83 -4.76 -11.01 16 3 C 0.02 0.13 9.32 127.69 1.19 1.32 16 4 C 0.05 0.68 5.13 86.31 0.44 1.12 16 5 C 0.13 1.62 6.41 86.38 0.55 2.17 16 6 N -0.36 -6.79 3.65 -346.29 -1.26 -8.05 16 7 C 0.14 3.02 11.25 84.27 0.95 3.97 16 8 C -0.30 -8.11 6.13 -20.15 -0.12 -8.23 16 9 C 0.58 21.03 7.78 86.66 0.67 21.70 16 10 O -0.59 -26.38 14.05 -4.14 -0.06 -26.44 16 11 N -0.61 -21.76 5.46 -306.85 -1.67 -23.43 16 12 C -0.04 -1.90 6.90 37.74 0.26 -1.64 16 13 C -0.06 -3.34 10.85 85.42 0.93 -2.42 16 14 N -0.31 -19.11 10.40 -56.46 -0.59 -19.69 16 15 N -0.17 -9.56 3.74 -190.01 -0.71 -10.27 16 16 C -0.35 -19.03 10.25 84.01 0.86 -18.17 16 17 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 18 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 19 N -0.83 -48.44 11.81 21.66 0.26 -48.19 16 20 Si 1.02 39.05 29.55 68.60 2.03 41.07 16 21 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 22 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 24 C -0.08 -3.76 11.49 83.38 0.96 -2.80 16 25 C 0.09 1.90 11.50 85.65 0.99 2.88 16 26 N -0.31 -6.90 12.33 -56.27 -0.69 -7.60 16 27 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.08 0.60 8.12 -2.39 -0.02 0.58 16 29 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 30 H 0.08 0.56 6.47 -2.39 -0.02 0.55 16 31 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 32 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.07 1.10 8.06 -2.39 -0.02 1.08 16 34 H 0.04 0.63 8.12 -2.39 -0.02 0.61 16 35 H 0.10 1.05 6.55 -2.39 -0.02 1.04 16 36 H 0.13 1.13 8.06 -2.39 -0.02 1.11 16 37 H 0.20 3.76 8.06 -2.91 -0.02 3.73 16 38 H 0.42 10.76 7.78 -92.71 -0.72 10.04 16 39 H 0.17 9.41 5.91 -2.91 -0.02 9.40 16 40 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.19 6.87 8.06 -2.91 -0.02 6.84 16 42 H 0.22 3.09 7.50 -2.91 -0.02 3.07 16 Total: -1.00 -80.73 360.77 2.24 -78.50 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.33 Total: 33.68 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 9.37 Total: 1.43 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -9.44 Total: -128.25 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.07 kcal Total: -80.73 2.24 -78.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.730 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds