Wall clock time and date at job start Fri Apr 10 2020 18:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34979 * 125.98020 * 2 1 4 4 C 1.35231 * 107.85372 * 179.75809 * 3 2 1 5 5 C 1.40376 * 107.87567 * 0.37280 * 4 3 2 6 6 N 1.40389 * 125.96887 * 179.88429 * 5 4 3 7 7 C 1.36086 * 125.93861 * 179.71432 * 6 5 4 8 8 C 1.35389 * 106.04878 * 180.02562 * 7 6 5 9 9 C 1.50701 * 126.73208 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47223 * 94.99824 * 9 8 7 11 11 C 1.47443 * 111.00227 * 69.87126 * 10 9 8 12 12 C 1.54312 * 107.23612 * 236.74273 * 11 10 9 13 13 C 1.55142 * 103.17714 * 337.62814 * 12 11 10 14 14 O 1.42900 * 110.99267 * 277.64922 * 13 12 11 15 15 C 1.50700 * 110.99048 * 153.83199 * 13 12 11 16 16 H 1.08004 * 119.99851 * 241.45911 * 15 13 12 17 17 C 1.37875 * 120.00057 * 61.45406 * 15 13 12 18 18 N 1.31517 * 120.00100 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00140 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47203 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47134 * 120.00042 * 19 17 15 22 22 H 1.48499 * 109.47287 * 240.00397 * 19 17 15 23 23 C 1.47844 * 110.99982 * 309.02970 * 10 9 8 24 24 N 1.33766 * 106.53810 * 0.25898 * 8 7 6 25 25 N 1.28609 * 109.04969 * 359.56500 * 24 8 7 26 26 N 1.31212 * 108.06306 * 359.62371 * 5 4 3 27 27 H 1.08997 * 109.47055 * 269.98357 * 1 2 3 28 28 H 1.09001 * 109.46490 * 29.97788 * 1 2 3 29 29 H 1.08998 * 109.46992 * 149.97522 * 1 2 3 30 30 H 1.08002 * 126.07190 * 0.02562 * 3 2 1 31 31 H 1.08006 * 126.05994 * 180.21607 * 4 3 2 32 32 H 1.07992 * 126.97532 * 0.02562 * 7 6 5 33 33 H 1.08999 * 109.47013 * 334.99798 * 9 8 7 34 34 H 1.08994 * 109.47127 * 214.99625 * 9 8 7 35 35 H 1.08997 * 109.88254 * 117.33308 * 11 10 9 36 36 H 1.09003 * 109.88840 * 356.15438 * 11 10 9 37 37 H 1.09002 * 110.70596 * 96.10119 * 12 11 10 38 38 H 1.09005 * 110.70742 * 219.16269 * 12 11 10 39 39 H 0.96696 * 113.99925 * 298.54409 * 14 13 12 40 40 H 0.96993 * 120.00152 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.37744 * 265.19940 * 23 10 9 42 42 H 1.09008 * 110.37208 * 27.53592 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2580 1.0923 0.0000 4 6 3.5432 0.6716 0.0054 5 6 3.5371 -0.7322 0.0002 6 7 4.6697 -1.5617 0.0010 7 6 4.6631 -2.9225 0.0014 8 6 5.9624 -3.3032 0.0027 9 6 6.4877 -4.7157 0.0031 10 7 6.7730 -5.1324 -1.3763 11 6 7.9396 -4.4101 -1.9161 12 6 7.4796 -3.6967 -3.2047 13 6 6.2322 -4.5128 -3.6347 14 8 6.6121 -5.6880 -4.3536 15 6 5.2876 -3.6664 -4.4487 16 1 4.2847 -3.4819 -4.0928 17 6 5.7037 -3.1275 -5.6476 18 7 6.9248 -3.3525 -6.0811 19 14 4.5327 -2.0790 -6.6569 20 1 3.2278 -1.9788 -5.9550 21 1 5.1075 -0.7205 -6.8286 22 1 4.3320 -2.7036 -7.9891 23 6 5.6131 -4.8782 -2.2572 24 7 6.6883 -2.1797 0.0089 25 7 5.8951 -1.1674 0.0020 26 7 2.2879 -1.1336 0.0001 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3632 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9252 2.1197 0.0004 31 1 4.4191 1.3036 0.0102 32 1 3.7972 -3.5679 0.0008 33 1 5.7410 -5.3809 0.4366 34 1 7.4028 -4.7628 0.5934 35 1 8.7378 -5.1154 -2.1473 36 1 8.2894 -3.6758 -1.1903 37 1 7.2098 -2.6613 -2.9968 38 1 8.2544 -3.7454 -3.9699 39 1 7.0927 -5.5093 -5.1734 40 1 7.2175 -2.9737 -6.9247 41 1 4.9985 -5.7742 -2.3435 42 1 5.0213 -4.0464 -1.8748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906311928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:14 Heat of formation + Delta-G solvation = 133.931803 kcal Electronic energy + Delta-G solvation = -27365.598752 eV Core-core repulsion = 23577.813248 eV Total energy + Delta-G solvation = -3787.785505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.58115 -42.39752 -40.14434 -36.96418 -35.93443 -34.22945 -33.42748 -33.07147 -31.51387 -30.85668 -29.86152 -28.02263 -27.37997 -25.84185 -24.86516 -23.30382 -21.93349 -21.88388 -21.55995 -20.78243 -19.12234 -18.97294 -17.88486 -17.42408 -16.98806 -16.89082 -16.60391 -16.28811 -15.97407 -15.84172 -15.29042 -14.86484 -14.60186 -14.44864 -14.25890 -13.84905 -13.77448 -13.46113 -13.41122 -13.22798 -13.06591 -12.76887 -12.72413 -12.52902 -12.32376 -12.26758 -12.15810 -12.07359 -11.97636 -11.62892 -11.13216 -10.65867 -10.43084 -10.31513 -10.10306 -9.75776 -9.30524 -8.27175 -6.42264 -0.18667 0.57388 0.84806 1.29020 1.30422 1.32367 1.41160 1.67334 1.80499 2.30146 2.96590 3.02662 3.24571 3.39442 3.72302 3.82818 3.94448 3.98026 4.06706 4.15812 4.25908 4.41947 4.42602 4.46092 4.49342 4.56559 4.70342 4.71177 4.77570 4.83938 4.90093 5.00601 5.05408 5.09609 5.28145 5.45919 5.51145 5.62030 5.75310 5.86177 5.91015 6.16696 6.19749 6.20947 6.62081 7.28551 7.28844 7.42539 8.78538 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.005254 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.572141 B = 5328.177752 C = 7026.198497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.349 5.349 3 C 0.102 3.898 4 C -0.274 4.274 5 C 0.253 3.747 6 N -0.220 5.220 7 C -0.019 4.019 8 C -0.047 4.047 9 C 0.131 3.869 10 N -0.510 5.510 11 C 0.049 3.951 12 C -0.125 4.125 13 C 0.237 3.763 14 O -0.584 6.584 15 C -0.556 4.556 16 H 0.044 0.956 17 C 0.030 3.970 18 N -0.908 5.908 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.270 1.270 23 C 0.060 3.940 24 N -0.266 5.266 25 N -0.089 5.089 26 N -0.314 5.314 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.245 0.755 31 H 0.164 0.836 32 H 0.210 0.790 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.022 0.978 38 H 0.053 0.947 39 H 0.371 0.629 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 8.963 14.555 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.133 5.133 3 C -0.045 4.045 4 C -0.304 4.304 5 C 0.001 3.999 6 N -0.009 5.009 7 C -0.170 4.170 8 C -0.186 4.186 9 C 0.001 3.999 10 N -0.232 5.232 11 C -0.079 4.079 12 C -0.164 4.164 13 C 0.197 3.803 14 O -0.391 6.391 15 C -0.594 4.594 16 H 0.062 0.938 17 C -0.170 4.170 18 N -0.547 5.547 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.205 1.205 22 H -0.195 1.195 23 C -0.068 4.068 24 N -0.135 5.135 25 N -0.068 5.068 26 N -0.144 5.144 27 H 0.120 0.880 28 H 0.150 0.850 29 H 0.107 0.893 30 H 0.261 0.739 31 H 0.182 0.818 32 H 0.227 0.773 33 H 0.140 0.860 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.219 0.781 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.192 8.360 14.950 21.620 hybrid contribution -0.363 1.537 -1.466 2.155 sum -13.555 9.898 13.484 21.530 Atomic orbital electron populations 1.22512 0.69833 1.06873 1.05790 1.48783 1.08271 1.01956 1.54265 1.23362 0.88284 0.95683 0.97179 1.21538 1.00323 0.90779 1.17772 1.18903 0.84658 0.90601 1.05694 1.43674 1.04770 1.05479 1.46962 1.24044 1.01497 0.83801 1.07613 1.23274 0.90362 0.98527 1.06397 1.21173 1.02952 0.84495 0.91289 1.63934 1.04190 1.53309 1.01752 1.22777 0.93605 0.95832 0.95701 1.22905 0.99929 0.97211 0.96361 1.19811 0.90158 0.82123 0.88193 1.86121 1.78683 1.34408 1.39932 1.21723 0.99195 1.32088 1.06444 0.93802 1.25663 0.96640 0.96563 0.98176 1.69826 1.17517 1.45667 1.21716 0.85592 0.79066 0.78583 0.78899 1.20004 1.20531 1.19501 1.23075 0.92743 0.99366 0.91572 1.74994 1.25756 0.96471 1.16246 1.78308 0.85546 1.22295 1.20693 1.77328 0.98938 1.10583 1.27530 0.88029 0.84959 0.89320 0.73881 0.81813 0.77285 0.86029 0.87586 0.91038 0.92054 0.95910 0.92839 0.78067 0.92185 0.91153 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.47 127.77 1.47 2.05 16 2 N -0.35 -6.15 4.01 -369.61 -1.48 -7.64 16 3 C 0.10 1.50 11.48 83.52 0.96 2.46 16 4 C -0.27 -6.63 10.62 22.10 0.23 -6.40 16 5 C 0.25 7.94 7.90 133.24 1.05 9.00 16 6 N -0.22 -7.97 3.56 -191.10 -0.68 -8.65 16 7 C -0.02 -0.67 9.61 83.37 0.80 0.14 16 8 C -0.05 -1.68 5.00 41.61 0.21 -1.47 16 9 C 0.13 4.12 5.84 85.56 0.50 4.62 16 10 N -0.51 -20.24 5.41 -889.11 -4.81 -25.06 16 11 C 0.05 2.08 6.47 86.64 0.56 2.64 16 12 C -0.12 -6.43 5.36 31.77 0.17 -6.26 16 13 C 0.24 12.62 0.88 -9.99 -0.01 12.61 16 14 O -0.58 -32.26 13.16 -148.98 -1.96 -34.22 16 15 C -0.56 -32.02 8.28 25.60 0.21 -31.81 16 16 H 0.04 2.56 7.79 -2.91 -0.02 2.54 16 17 C 0.03 1.70 5.29 84.65 0.45 2.15 16 18 N -0.91 -51.41 10.75 21.45 0.23 -51.18 16 19 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 C 0.06 2.72 5.68 86.94 0.49 3.22 16 24 N -0.27 -10.72 11.58 -48.58 -0.56 -11.28 16 25 N -0.09 -3.56 12.96 37.02 0.48 -3.08 16 26 N -0.31 -8.84 12.45 -54.32 -0.68 -9.52 16 27 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.25 0.59 8.06 -2.91 -0.02 0.56 16 31 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.21 6.07 8.06 -2.91 -0.02 6.04 16 33 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.11 2.99 8.04 -2.39 -0.02 2.97 16 35 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.06 2.53 6.55 -2.39 -0.02 2.51 16 37 H 0.02 1.26 8.03 -2.39 -0.02 1.24 16 38 H 0.05 2.92 7.53 -2.38 -0.02 2.90 16 39 H 0.37 20.81 7.56 -74.06 -0.56 20.25 16 40 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.05 2.39 4.67 -2.38 -0.01 2.38 16 Total: -1.00 -77.97 350.13 0.15 -77.82 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.50 Total: 33.19 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 7.10 Total: -7.05 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -7.50 Total: -116.40 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.96 Total: -34.22 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -77.97 0.15 -77.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906311928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.750 kcal (2) G-P(sol) polarization free energy of solvation -77.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds