Wall clock time and date at job start Fri Apr 10 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34974 * 125.97684 * 2 1 4 4 C 1.35226 * 107.85799 * 180.02562 * 3 2 1 5 5 C 1.40381 * 107.87720 * 0.02562 * 4 3 2 6 6 N 1.40378 * 125.97374 * 179.97438 * 5 4 3 7 7 C 1.36090 * 125.94002 * 179.71681 * 6 5 4 8 8 C 1.35389 * 106.05073 * 180.26822 * 7 6 5 9 9 C 1.50701 * 126.73370 * 179.97438 * 8 7 6 10 10 N 1.46907 * 109.46947 * 95.01462 * 9 8 7 11 11 C 1.47438 * 110.99663 * 69.87869 * 10 9 8 12 12 C 1.54314 * 107.23471 * 123.25961 * 11 10 9 13 13 C 1.55137 * 103.01991 * 22.27854 * 12 11 10 14 14 O 1.42895 * 110.99141 * 82.47667 * 13 12 11 15 15 C 1.50698 * 110.99224 * 206.25856 * 13 12 11 16 16 H 1.08005 * 120.00493 * 118.54249 * 15 13 12 17 17 C 1.37878 * 120.00060 * 298.54611 * 15 13 12 18 18 N 1.31511 * 119.99967 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00036 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.46986 * 60.00048 * 19 17 15 21 21 H 1.48498 * 109.47129 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47037 * 300.00223 * 19 17 15 23 23 C 1.47846 * 110.99676 * 190.71769 * 10 9 8 24 24 N 1.33763 * 106.53418 * 359.97438 * 8 7 6 25 25 N 1.28600 * 109.06148 * 359.97438 * 24 8 7 26 26 N 1.31209 * 108.05400 * 0.24177 * 5 4 3 27 27 H 1.08989 * 109.47136 * 89.99880 * 1 2 3 28 28 H 1.08997 * 109.46598 * 209.99787 * 1 2 3 29 29 H 1.08998 * 109.47085 * 329.98928 * 1 2 3 30 30 H 1.07999 * 126.07360 * 0.02562 * 3 2 1 31 31 H 1.08008 * 126.06411 * 179.97438 * 4 3 2 32 32 H 1.07991 * 126.97501 * 0.24467 * 7 6 5 33 33 H 1.08994 * 109.47395 * 215.01677 * 9 8 7 34 34 H 1.09006 * 109.46977 * 335.01967 * 9 8 7 35 35 H 1.09007 * 109.88456 * 242.66165 * 11 10 9 36 36 H 1.08995 * 109.89526 * 3.84629 * 11 10 9 37 37 H 1.09005 * 110.70995 * 140.66492 * 12 11 10 38 38 H 1.09007 * 110.70487 * 263.72289 * 12 11 10 39 39 H 0.96699 * 113.99852 * 61.45663 * 14 13 12 40 40 H 0.97004 * 120.00159 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.37521 * 332.46861 * 23 10 9 42 42 H 1.08998 * 110.37159 * 94.81083 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2580 1.0923 0.0000 4 6 3.5432 0.6717 -0.0006 5 6 3.5372 -0.7321 -0.0015 6 7 4.6698 -1.5614 -0.0029 7 6 4.6633 -2.9223 0.0016 8 6 5.9626 -3.3029 0.0043 9 6 6.4881 -4.7153 0.0101 10 7 6.7736 -5.1372 -1.3678 11 6 7.9403 -4.4168 -1.9098 12 6 8.9692 -5.4791 -2.3506 13 6 8.0972 -6.7453 -2.5583 14 8 7.4758 -6.7335 -3.8450 15 6 8.9112 -7.9989 -2.3665 16 1 8.6519 -8.6969 -1.5842 17 6 9.9872 -8.2548 -3.1898 18 7 10.3028 -7.4051 -4.1427 19 14 10.9968 -9.8084 -2.9516 20 1 10.1236 -10.9971 -3.1226 21 1 12.0887 -9.8481 -3.9572 22 1 11.5803 -9.8151 -1.5860 23 6 7.0454 -6.5890 -1.4318 24 7 6.6884 -2.1793 0.0008 25 7 5.8952 -1.1670 -0.0043 26 7 2.2881 -1.1334 -0.0068 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 1.9251 2.1197 0.0004 31 1 4.4190 1.3038 -0.0011 32 1 3.7974 -3.5677 0.0032 33 1 7.4030 -4.7602 0.6008 34 1 5.7412 -5.3790 0.4459 35 1 7.6388 -3.8145 -2.7669 36 1 8.3730 -3.7787 -1.1393 37 1 9.4508 -5.1855 -3.2834 38 1 9.7121 -5.6433 -1.5700 39 1 8.1003 -6.7322 -4.5833 40 1 11.0601 -7.5850 -4.7217 41 1 7.4501 -6.9415 -0.4831 42 1 6.1359 -7.1345 -1.6835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906311930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:17 Heat of formation + Delta-G solvation = 132.503973 kcal Electronic energy + Delta-G solvation = -25954.245327 eV Core-core repulsion = 22166.397907 eV Total energy + Delta-G solvation = -3787.847420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.53209 -42.36376 -40.07567 -36.88660 -35.96058 -34.15414 -33.53809 -33.07703 -31.48033 -30.82212 -29.87227 -27.97839 -27.30275 -25.77935 -24.84646 -23.30141 -21.92482 -21.69497 -21.37980 -21.02100 -19.09988 -18.84922 -17.85369 -17.36409 -17.00228 -16.84198 -16.47287 -16.28135 -15.92671 -15.75135 -15.47384 -14.82514 -14.38960 -14.35921 -14.26165 -13.85312 -13.77694 -13.42056 -13.35521 -13.14116 -13.03712 -12.87187 -12.64761 -12.42801 -12.30798 -12.23572 -12.13558 -12.06838 -11.99848 -11.60620 -11.09062 -10.60152 -10.44414 -10.31705 -10.04846 -9.72405 -9.18622 -8.18222 -6.34403 -0.16828 0.58748 0.87631 1.28680 1.43794 1.44672 1.52401 1.69777 1.81946 2.40598 3.01841 3.05870 3.28120 3.42435 3.70673 3.83371 4.02081 4.02785 4.11334 4.17666 4.26702 4.45375 4.46769 4.48854 4.49341 4.57005 4.61038 4.74830 4.76613 4.82348 4.93813 4.97413 5.09356 5.12300 5.29223 5.49716 5.56257 5.64407 5.81704 5.89060 5.95989 6.21757 6.22962 6.24674 6.71835 7.29231 7.36766 7.46638 8.87015 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.034968 B = 0.002372 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.532515 B =11801.385378 C =12003.890763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.348 5.348 3 C 0.102 3.898 4 C -0.272 4.272 5 C 0.254 3.746 6 N -0.223 5.223 7 C -0.008 4.008 8 C -0.010 4.010 9 C 0.134 3.866 10 N -0.528 5.528 11 C 0.061 3.939 12 C -0.134 4.134 13 C 0.234 3.766 14 O -0.588 6.588 15 C -0.559 4.559 16 H 0.060 0.940 17 C 0.027 3.973 18 N -0.913 5.913 19 Si 0.962 3.038 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.068 3.932 24 N -0.275 5.275 25 N -0.086 5.086 26 N -0.313 5.313 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.244 0.756 31 H 0.165 0.835 32 H 0.218 0.782 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.371 0.629 40 H 0.267 0.733 41 H 0.062 0.938 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.946 17.767 10.713 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.132 5.132 3 C -0.045 4.045 4 C -0.302 4.302 5 C 0.003 3.997 6 N -0.012 5.012 7 C -0.157 4.157 8 C -0.147 4.147 9 C 0.005 3.995 10 N -0.253 5.253 11 C -0.067 4.067 12 C -0.174 4.174 13 C 0.194 3.806 14 O -0.395 6.395 15 C -0.597 4.597 16 H 0.078 0.922 17 C -0.174 4.174 18 N -0.553 5.553 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.059 4.059 24 N -0.143 5.143 25 N -0.065 5.065 26 N -0.143 5.143 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.153 0.847 30 H 0.260 0.740 31 H 0.183 0.817 32 H 0.234 0.766 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.219 0.781 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.813 18.144 10.651 30.306 hybrid contribution 2.024 -1.232 -0.189 2.377 sum -19.789 16.912 10.462 28.055 Atomic orbital electron populations 1.22507 0.69866 1.07092 1.05558 1.48784 1.08240 1.01975 1.54218 1.23361 0.88324 0.95657 0.97144 1.21536 1.00275 0.90727 1.17669 1.18860 0.84522 0.90480 1.05865 1.43701 1.04808 1.05481 1.47183 1.23949 1.01222 0.83594 1.06972 1.21990 0.90345 0.96145 1.06204 1.20559 1.01016 0.87902 0.90033 1.63534 1.38070 1.04910 1.18773 1.22598 0.89887 0.95801 0.98425 1.23071 0.97356 0.96932 0.99994 1.19801 0.88164 0.91535 0.81091 1.86129 1.38928 1.97297 1.17180 1.21796 1.13223 1.07402 1.17259 0.92151 1.25749 0.97697 0.99477 0.94436 1.69845 1.28978 1.36998 1.19430 0.85563 0.78012 0.79765 0.77967 1.19762 1.20905 1.19592 1.22880 0.98518 0.87029 0.97446 1.75020 1.26015 0.96683 1.16609 1.78341 0.85495 1.21926 1.20720 1.77344 0.98915 1.10556 1.27497 0.88799 0.88923 0.84677 0.74019 0.81706 0.76577 0.92807 0.86279 0.93701 0.92592 0.92878 0.93542 0.78138 0.92337 0.91992 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.17 11.47 127.77 1.47 1.63 16 2 N -0.35 -4.26 4.01 -369.63 -1.48 -5.74 16 3 C 0.10 0.94 11.48 83.51 0.96 1.90 16 4 C -0.27 -4.97 10.62 22.10 0.23 -4.73 16 5 C 0.25 6.42 7.90 133.24 1.05 7.47 16 6 N -0.22 -6.82 3.56 -191.11 -0.68 -7.50 16 7 C -0.01 -0.23 11.43 83.37 0.95 0.72 16 8 C -0.01 -0.33 6.22 41.61 0.26 -0.07 16 9 C 0.13 4.41 5.11 85.56 0.44 4.84 16 10 N -0.53 -21.42 5.15 -890.09 -4.58 -26.00 16 11 C 0.06 2.69 6.39 86.65 0.55 3.24 16 12 C -0.13 -6.70 5.37 31.77 0.17 -6.53 16 13 C 0.23 12.08 0.87 -10.16 -0.01 12.08 16 14 O -0.59 -32.39 13.16 -148.98 -1.96 -34.36 16 15 C -0.56 -30.51 8.27 25.60 0.21 -30.30 16 16 H 0.06 3.21 7.79 -2.91 -0.02 3.19 16 17 C 0.03 1.46 5.29 84.66 0.45 1.90 16 18 N -0.91 -50.66 10.75 21.45 0.23 -50.43 16 19 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 23 C 0.07 2.98 5.86 86.77 0.51 3.49 16 24 N -0.27 -10.24 11.81 -48.58 -0.57 -10.81 16 25 N -0.09 -2.98 12.96 37.02 0.48 -2.50 16 26 N -0.31 -6.98 12.45 -54.33 -0.68 -7.65 16 27 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.14 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.24 -0.62 8.06 -2.91 -0.02 -0.64 16 31 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.22 5.10 8.06 -2.92 -0.02 5.08 16 33 H 0.05 1.78 7.96 -2.39 -0.02 1.76 16 34 H 0.12 3.13 8.07 -2.38 -0.02 3.11 16 35 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.06 2.38 6.84 -2.39 -0.02 2.37 16 37 H 0.05 2.85 7.54 -2.38 -0.02 2.83 16 38 H 0.05 2.35 8.04 -2.38 -0.02 2.33 16 39 H 0.37 20.80 7.56 -74.06 -0.56 20.24 16 40 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 41 H 0.06 2.52 7.70 -2.39 -0.02 2.50 16 42 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -75.22 355.64 0.51 -74.71 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.49 Total: 29.65 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 7.24 Total: -4.34 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -7.29 Total: -110.64 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.96 Total: -34.36 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -75.22 0.51 -74.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906311930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.217 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds