Wall clock time and date at job start Fri Apr 10 2020 18:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00296 * 2 1 4 4 C 1.52999 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46881 * 65.60127 * 4 3 2 6 6 C 1.46904 * 110.99730 * 287.08933 * 5 4 3 7 7 C 1.50704 * 109.47325 * 302.70713 * 6 5 4 8 8 H 1.08008 * 119.99764 * 4.44551 * 7 6 5 9 9 C 1.37876 * 120.00372 * 184.44540 * 7 6 5 10 10 N 1.31514 * 119.99497 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00081 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47282 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47201 * 120.00309 * 11 9 7 14 14 H 1.48504 * 109.47333 * 239.99689 * 11 9 7 15 15 C 1.38303 * 110.99882 * 163.14000 * 5 4 3 16 16 N 1.31483 * 126.36323 * 16.62802 * 15 5 4 17 17 N 1.28516 * 110.06584 * 179.82140 * 16 15 5 18 18 C 1.31289 * 109.91456 * 0.44728 * 17 16 15 19 19 C 1.47776 * 126.47015 * 179.76113 * 18 17 16 20 20 C 1.39953 * 120.20325 * 359.96490 * 19 18 17 21 21 C 1.38566 * 117.87757 * 179.97438 * 20 19 18 22 22 C 1.38791 * 118.08632 * 359.97438 * 21 20 19 23 23 N 1.31947 * 120.11704 * 0.02562 * 22 21 20 24 24 N 1.28359 * 122.32855 * 359.66012 * 23 22 21 25 25 N 1.36358 * 126.36426 * 196.93647 * 15 5 4 26 26 C 1.46497 * 127.15807 * 0.02562 * 25 15 5 27 27 H 1.09001 * 109.47372 * 60.00357 * 1 2 3 28 28 H 1.09006 * 109.47538 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47752 * 300.00215 * 1 2 3 30 30 H 1.09002 * 109.47008 * 59.99177 * 3 2 1 31 31 H 1.09003 * 109.46805 * 299.99609 * 3 2 1 32 32 H 1.09003 * 109.46854 * 185.59621 * 4 3 2 33 33 H 1.08998 * 109.46911 * 305.59462 * 4 3 2 34 34 H 1.08994 * 109.47033 * 62.70644 * 6 5 4 35 35 H 1.08995 * 109.47074 * 182.70727 * 6 5 4 36 36 H 0.97007 * 119.99860 * 180.02562 * 10 9 7 37 37 H 1.08002 * 121.06669 * 0.02562 * 20 19 18 38 38 H 1.08004 * 120.96231 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.94017 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47105 * 95.59754 * 26 25 15 41 41 H 1.08996 * 109.47323 * 215.60140 * 26 25 15 42 42 H 1.09003 * 109.47037 * 335.59759 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9788 0.5753 -1.2604 6 6 3.6601 -0.8584 -1.2930 7 6 4.2999 -1.5423 -0.1123 8 1 4.8242 -0.9593 0.6305 9 6 4.2160 -2.9122 0.0197 10 7 3.5779 -3.6220 -0.8851 11 14 5.0084 -3.7597 1.4835 12 1 5.6593 -2.7449 2.3504 13 1 3.9685 -4.4805 2.2608 14 1 6.0270 -4.7278 1.0032 15 6 5.3301 0.7873 -1.4650 16 7 6.2069 1.1596 -0.5586 17 7 7.3735 1.2590 -1.0884 18 6 7.3108 0.9657 -2.3666 19 6 8.4359 0.9682 -3.3246 20 6 9.7244 1.3076 -2.8965 21 6 10.7437 1.2937 -3.8351 22 6 10.4255 0.9442 -5.1401 23 7 9.1824 0.6375 -5.4591 24 7 8.2316 0.6414 -4.5968 25 7 5.9996 0.6549 -2.6455 26 6 5.4394 0.2637 -3.9414 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.9784 2.1755 0.1009 33 1 3.8500 0.5597 0.8365 34 1 2.5792 -0.9913 -1.2480 35 1 4.0417 -1.2945 -2.2161 36 1 3.5185 -4.5858 -0.7921 37 1 9.9184 1.5712 -1.8673 38 1 11.7567 1.5468 -3.5591 39 1 11.1966 0.9240 -5.8960 40 1 5.2048 1.1569 -4.5204 41 1 6.1664 -0.3405 -4.4840 42 1 4.5301 -0.3164 -3.7839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908560685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:28 Heat of formation + Delta-G solvation = 119.629664 kcal Electronic energy + Delta-G solvation = -27113.179618 eV Core-core repulsion = 23324.773926 eV Total energy + Delta-G solvation = -3788.405692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.40552 -40.87189 -37.98317 -36.20644 -34.54154 -33.49051 -32.93735 -32.47696 -29.74999 -28.74419 -27.32086 -26.42472 -25.56332 -24.90613 -24.51644 -22.88331 -21.94076 -20.91486 -19.74702 -17.59390 -17.20948 -16.91389 -16.62499 -16.09771 -16.06861 -15.56970 -15.44344 -14.95247 -14.71219 -14.43221 -14.22100 -13.84412 -13.55815 -13.29855 -12.92285 -12.75854 -12.39543 -11.88573 -11.66690 -11.36981 -11.17071 -11.11000 -11.02079 -10.97853 -10.78043 -10.67022 -10.41837 -10.34337 -10.10628 -9.98432 -9.88745 -9.67961 -9.47655 -9.06626 -8.63599 -8.36364 -7.47015 -6.03757 -4.07387 0.46724 0.67749 2.34628 2.70715 3.22347 3.30593 3.38287 3.45982 3.60938 3.69422 4.25878 4.36377 4.41936 4.45709 4.58409 4.59330 4.82223 4.93766 5.26334 5.32330 5.48047 5.53703 5.61111 5.63963 5.67309 5.72347 5.81260 5.81642 5.90483 5.94389 6.01091 6.07599 6.11585 6.26504 6.50809 6.70414 6.87743 7.21679 7.53752 7.56371 7.76024 7.91710 8.10633 8.19460 8.51850 8.96861 9.18095 9.57473 11.04118 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.004258 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.100735 B = 6574.389460 C = 7487.142349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.069 3.931 4 C 0.071 3.929 5 N -0.465 5.465 6 C 0.185 3.815 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.069 3.931 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.286 1.286 15 C 0.426 3.574 16 N -0.325 5.325 17 N -0.248 5.248 18 C 0.172 3.828 19 C 0.172 3.828 20 C -0.085 4.085 21 C -0.114 4.114 22 C 0.032 3.968 23 N -0.236 5.236 24 N -0.240 5.240 25 N -0.456 5.456 26 C 0.083 3.917 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 10.978 -6.014 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C -0.008 4.008 4 C -0.056 4.056 5 N -0.189 5.189 6 C 0.063 3.937 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.133 4.133 10 N -0.531 5.531 11 Si 0.716 3.284 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.213 1.213 15 C 0.071 3.929 16 N -0.173 5.173 17 N -0.093 5.093 18 C -0.092 4.092 19 C 0.027 3.973 20 C -0.116 4.116 21 C -0.143 4.143 22 C -0.133 4.133 23 N -0.077 5.077 24 N -0.085 5.085 25 N -0.148 5.148 26 C -0.060 4.060 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.191 0.809 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.126 10.751 -6.349 13.497 hybrid contribution 1.067 -0.799 1.155 1.764 sum 6.193 9.952 -5.194 12.821 Atomic orbital electron populations 1.22665 0.83034 1.02321 0.98666 1.88328 1.17812 1.26261 1.94814 1.22485 0.93521 0.85579 0.99206 1.22031 0.92754 0.99428 0.91398 1.59441 1.04484 1.20156 1.34811 1.20327 1.00130 0.76196 0.97079 1.21651 1.34639 0.92537 1.08874 0.91626 1.24820 0.95037 0.97305 0.96129 1.69940 1.42260 1.06412 1.34452 0.86587 0.79118 0.79608 0.83103 1.19565 1.20888 1.21253 1.22679 0.91998 0.96421 0.81806 1.74749 0.94684 1.24739 1.23092 1.74113 1.16731 1.15948 1.02528 1.21383 0.83114 1.11267 0.93480 1.19750 0.90679 0.95560 0.91349 1.22355 0.91244 0.95491 1.02469 1.22377 1.01055 0.97327 0.93523 1.24344 0.96396 0.95997 0.96610 1.73010 0.98503 1.09903 1.26314 1.73285 1.25135 1.10788 0.99320 1.45831 1.07369 1.51280 1.10326 1.22183 1.01178 1.01738 0.80875 0.94909 0.90009 0.95099 0.93348 0.93499 0.90323 0.89952 0.90073 0.95401 0.92994 0.81969 0.82711 0.80936 0.90731 0.88506 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.35 -6.84 7.68 -35.23 -0.27 -7.11 16 3 C 0.07 1.15 6.25 37.16 0.23 1.38 16 4 C 0.07 1.38 4.83 -3.83 -0.02 1.36 16 5 N -0.46 -9.88 4.64 -175.93 -0.82 -10.70 16 6 C 0.19 4.58 4.46 -4.97 -0.02 4.56 16 7 C -0.54 -14.80 7.72 -34.44 -0.27 -15.06 16 8 H 0.07 1.87 6.31 -52.48 -0.33 1.54 16 9 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 10 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 11 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 C 0.43 9.27 6.09 -319.08 -1.94 7.33 16 16 N -0.32 -7.31 11.28 30.28 0.34 -6.97 16 17 N -0.25 -5.16 11.93 32.59 0.39 -4.78 16 18 C 0.17 3.30 7.83 -153.74 -1.20 2.09 16 19 C 0.17 2.72 6.83 -82.85 -0.57 2.16 16 20 C -0.09 -1.03 9.84 -38.82 -0.38 -1.41 16 21 C -0.11 -1.00 10.20 -39.26 -0.40 -1.40 16 22 C 0.03 0.30 11.31 -17.30 -0.20 0.11 16 23 N -0.24 -3.25 11.50 30.59 0.35 -2.90 16 24 N -0.24 -3.80 9.18 33.30 0.31 -3.49 16 25 N -0.46 -9.03 3.23 -122.11 -0.39 -9.42 16 26 C 0.08 1.38 10.39 59.85 0.62 2.01 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.40 7.75 -51.93 -0.40 0.99 16 33 H 0.08 1.83 5.88 -51.93 -0.31 1.52 16 34 H 0.08 2.11 5.48 -51.93 -0.28 1.82 16 35 H 0.03 0.74 6.28 -51.93 -0.33 0.41 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 37 H 0.16 1.79 7.93 -52.49 -0.42 1.37 16 38 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.58 6.63 -51.93 -0.34 1.24 16 42 H 0.10 1.69 6.20 -51.93 -0.32 1.36 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -33.86 351.52 -7.46 -41.31 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.25 Total: 0.17 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -3.13 Total: 6.54 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.91 Total: -63.46 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.27 Total: -7.11 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.86 -7.46 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908560685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.944 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds